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. 2011 Jul 1;3(3):205–210. doi: 10.4161/derm.3.3.16519

Vitamin D receptor (VDR) polymorphisms and skin cancer

A systematic review

Nicole Denzer 1, Thomas Vogt 1, Jörg Reichrath 1,
PMCID: PMC3219172  PMID: 22110781

Abstract

Skin cancer is the most common cancer in humans. There are several types of skin cancer that include basal cell carcinoma (BCC), squamous cell carcinoma (SCC) and malignant melanoma (MM). The associations of vDr polymorphisms with skin cancer risk are not well characterized so far. Only a few epidemiologic studies have directly addressed the relationship between VDR polymorphisms and the incidence and prognosis of MM. To make the most of the available information on VDR polymorphisms and skin cancer (MM, BCC and SCC), we undertook a systematic review of published studies. In conclusion, data summarized in this review support the concept that the vitamin D endocrine system (VDES) is of importance for pathogenesis and progression of MM and other types of skin cancer.

Key words: VDR, polymorphism, skin cancer, vitamin D, melanoma, basal cell carcinoma, squamous cell carcinoma

Introduction

Skin cancer is the most common cancer in humans. There are several types of skin cancer that include basal cell carcinoma (BCC), squamous cell carcinoma (SCC) and malignant melanoma (MM). The key environmental risk factor in the development of non-melanoma skin cancer (NMSC) is ultraviolet (UV) radiation, in particular UV-B with a wavelength range between 280 and 320 nm.1,2 The UV-B radiation induces photochemical changes in the skin that may lead to skin cancer.1,2 Interestingly, recent evidence indicates that the cutaneous production of vitamin D may exert a protective effect against the development of skin cancer. Sunlight causes DNA damage but also induces production of vitamin D whose metabolite 1,25-dihydroxyvitamin D3 [1,25(OH)2D3 or calcitriol] has significant protective effects against the development of various types of cancer.3,4 1,25(OH)2D3 acts via binding to a corresponding intranuclear receptor (VDR).5,6 VDR belongs to the superfamily of transacting transcriptional regulatory factors, which includes the steroid and thyroid hormone receptors as well as the retinoid-X receptors and retinoic acid receptors.7,8 VDR is encoded by a relatively large gene (>100 kb) located on chromosome 12q12–14.5,9 The VDR gene encompasses two promoter regions, eight protein-coding exons (2–9) and six untranslated exons (1a–1f).5 It has an extensive promoter region capable of generating multiple tissue-specific transcripts.

It has been demonstrated that VDR requires heterodimerization with auxiliary proteins for effective DNA interaction.8,10,11 These auxiliary proteins have been identified as the retinoid-X receptors (RXR)-α, -β and -γ.8,10,11

MM cells have been demonstrated to express the VDR, and the anti-proliferation and pro-differentiation effects of 1,25(OH)2D3 have been shown in cultured melanocytes, MM cells and MM xenografts.12 Moreover, 1,25(OH)2D3 has been shown to exert an inhibitory effect on the spread of MM cells and it has been noticed that MM patients have low serum levels of 1,25(OH)2D3. In addition to these findings, VDR polymorphisms have been shown to be associated with both the occurrence and outcome of MM.12

To date, more than sixty VDR polymorphisms have been discovered that are located in the promoter, in and around exons 2–9 and in the 3′UTR region.13,14 The analysis of the importance of these VDR polymorphisms for various diseases has been proven to be difficult. As a result, only few polymorphisms of this large gene have been studied extensively so far. Most of them are restriction fragment lengths polymorphisms (RFLP) with an unknown functional effect. In some cases, it has been indicated that they may be linked to truly functional polymorphisms elsewhere in the VDR gene (or in a nearby gene), which may explain some of the associations observed.13

The associations of VDR polymorphisms with skin cancer risk are not well characterized so far. Only a few epidemiologic studies have directly addressed the relationship between VDR polymorphisms and the incidence and prognosis of MM. To make the most of the available information on VDR polymorphisms and skin cancer (MM, BCC and SCC), we undertook a systematic review of published studies.

Results

We included data from four original reports (refs. 1518) and three reviews (refs. 1921) publishing data for VDR polymorphisms and the risk of skin cancer. The reviews included the following additional studies: Hutchinson et al.12 (in reviews by Mocellin et al.,18 Köstner et al.20 and Gandini et al.21), Halsall et al.22 (in review by Mocellin et al.19), Santonocito et al.23 (in reviews by Mocellin et al.,19 Köstner et al.20 and Gandini et al.21), Han et al.24 (in reviews by Mocellin et al.,19 Köstner et al.,20 and Gandini et al.,21), Povey et al.25 (in review by Mocellin et al.19), Li et al.26 (in review by Köstner et al.20), Li et al.27 (in reviews by Mocellin et al.,19 Köstner et al.20 and Gandini et al. 21). The main characteristics of the studies are reported in Table 1. The total cases of MM were 5,319, of NMCS (BCC/SCC) were 563 and of controls were 5,858. The following SNP's were studied: TaqI (3 studies and 2 reviews), BsmI (2 studies and 3 reviews), FokI (3 studies and 3 reviews), ApaI (1 study), A-1012G (3 studies and 1 review), BglI (1 study) and Cdx2 (1 study and 2 reviews).

Table 1.

Summary of the studies investigating the association between VDR SNP's and skin cancer

Reference SNP Type of cancer Study type Cases (total) Controls (total) Country
Original papers
Randerson-Moor et al. 2009 TaqI, BsmI, FokI, ApaI, Cdx2, GATA MM CCS 1343 980 UK
Gapska et al. 2009 TaqI, BsmI, FokI, A-1012G MM PCCS 763 1540 Poland
Halsall et al. 2009 A-1012G MM CCS 176 80 UK
Barroso et al. 2008 TaqI, FokI, BglI MM CCS 283 245 Spain
Reviews
Gandini et al. 2009 BsmI, FokI MM, NMSC review 1437 (MM)
563 (NMSC)
1889
854
UK, USA, Italy
USA
Köstner et al. 2009 TaqI, BsmI, FokI, A-1012G MM, NMSC review 2039 (MM)
563 (NMSC)
2492
854
UK, USA, Italy
USA
Mocellin et al. 2008 TaqI, BsmI, FokI, A-1012G, Cdx2 MM review 2152 2410 UK, USA, Italy

MM = malignant melanoma, NMSC = non-melanoma skin cancer, CCS = case-control study, PCCS = population based case-control study.

TaqI polymorphism.

The TaqI polymorphism (rs731236) is a restriction fragment length polymorphism (RFLP) at codon 352 in exon 9 of the VDR gene. Depending on the presence or absence of a Taq1 restriction site in each allele, products are digested into 2 fragments of 495 and 245 bp (T allele: absence of the restriction site) or 3 fragments of 290, 245 and 205 bp (t allele: presence of the restriction site). Individuals are generally classified as TT, Tt or tt. The TT allele has been shown to be associated with lower circulating levels of active vitamin D3 (refs 2830). The TaqI polymorphism leads to a silent codon change (from ATT to ATC, which both result in an isoleucine at codon 352).28

The TaqI polymorphism was investigated in three papers and in two reviews (Table 1). It was reported that the TaqI allele t was significantly less frequent among melanoma cases than among controls [0.370 vs. 0.429 (p < 0.01)].27 This suggested that t might protect carriers against melanoma or T might put them at risk. The genotypes Tt + tt were constantly less frequent among melanoma cases than among controls (p < 0.05) and were associated with a significantly lower melanoma risk for Tt + tt vs. TT genotypes [adjusted OR (CI) 0.68 (0.56, 0.83)].27

However, the three studies summarized in Table 1 did not observe any significant over-representation of the TaqI polymorphism among the MM cases. Gapska et al. were unable to find any statistical association of the TaqI polymorphism with any distinct clinical signs (age of onset, primary tumor localization, familial aggregation, tumor type, Breslow's depth).16 But they demonstrate a statistically significant association of the VDR haplotype: rs731236_A (TaqI) and rs1544410_T (BsmI). This haplotype was present in 1.9% of melanoma cases and in 0.5% of controls (OR = 3.2, 95% CI 1.42–4.7, p = 0.02).16 However in one study, homozygosity for variant allele at the TaqI restriction site was significantly associated with higher Breslow thickness (OR = 31.5).12

BsmI polymorphism.

The BsmI polymorphism (rs1544410) is an RFLP in intron 8 at the 3′ end of the VDR gene and is considered to be a silent SNP without changing the amino acid sequence of the encoded protein.31 However, the BsmI polymorphism may affect gene expression through regulation of mRNA stability.32

The BsmI polymorphism was investigated in two original articles and in three reviews (Table 1).

The BsmI allele B was significantly less frequent among melanoma cases than among controls [0.394 vs. 0.431 (p = 0.03)].27 This suggested that B might protect carriers against melanoma or b might put them at risk. The genotypes Bb + BB were constantly less frequent among cases than among controls (p < 0.05) and were associated with a significantly lower melanoma risk for Bb + BB vs. bb genotypes [adjusted OR (CI) 0.68 (0.56, 0.83)].27 Significant associations were found between the Bsm1 bb genotype frequency and the tumor thickness (Breslow) of MM (p = 0.001).23 This result was confirmed by multivariate logistic regression analysis. Analyzing SCC, the BB genotype was significantly associated with increased cancer risk (OR = 1.51).24 Moreover, an interaction between the Bsm1 polymorphism and total vitamin D intake was observed in SCC patients with >2-fold higher risk seen in women with the BB genotype and high vitamin D intake (OR = 2.38, p interaction = 0.08).24

There is a strong linkage disequilibrium (LD) between the BsmI, ApaI and TaqI polymorphisms (D = 0.97) with three haplotypes accounting for 97% of all haplotypes (G-C-T 45%, A-A-C 40%, G-A-T 12% for the BsmI-ApaI-TaqI haplotype).17 But there was no evidence of any association between any haplotype and melanoma status.17

FokI polymorphism.

Of particular interest is the FokI polymorphism (rs2228570, formally known as rs10735810) located at the first potential start site33,34 which can be detected by a RFLP using the Fok1 restriction enzyme.35 It alters an ACG codon that is located ten base pairs upstream from the translation start codon and results in the generation of an additional start codon. If the translation initiating starts from this alternative site (thymine variant), it results in the generation of a longer VDR protein of 427 amino acids. This polymorphism is referred to as the f allele.34 However, the f allele exerts less transcriptional activity,36 with the F variant being 1.7-fold more active.35,37,38 To date, the Fok1 polymorphism is the only known VDR gene polymorphism that results in the generation of an altered protein.

The FokI polymorphism was investigated in three original articles and in three reviews (Table 1).

The FokI f allele was identified as a risk allele for MM and NMSC.17,19,20,21 For the association of the Ff and ff genotypes vs. wild-type genotype with MM or NMSC risk, the summary relative risks (SRR) were 1.11 (0.95–1.31) and 1.30 (1.03–1.63) respectively.21 Using the Breslow thickness as outcome measure in melanoma cases, variant alleles could be associated with increased Breslow thickness including the tt/ff genotype (Taq1 t and Fok1 f) which turned out to be associated with tumors thicker than 3.5 mm (OR = 31.5, p = 0.001).12

However, the indication that the f allele may be a risk allele for melanoma or other types of skin cancer could not be confirmed by several other studies (ref. 15: MM, ref. 16: MM, ref. 23: MM; ref. 27: CM; ref. 24: MM, NMCS). Gapska et al. investigated the melanoma risk in the Polish population. But none of the investigated VDR variants alone or as compound carriers of two or more of the VDR genotypes were associated with MM risk. There were no major differences between the prevalences of the examined variants among patients with MM on UV-exposed and UV-non exposed skin areas, as well as among early-onset and late-onset cases.16 Santonocito et al. found no association between the Fok1 genotype frequency and MM along with Breslow thickness.23 Li et al. stated that the Fok1 polymorphism is not an independent risk factor but is interacting with skin color (p = 0.029), moles (p = 0.017) and number of first-degree relatives with any cancer (p = 0.013) in modifying melanoma risk.27 Associations of haplotype combinations including FokI, TaqI and BsmI polymorphisms with melanoma risk and their interaction with known risk factors were also analyzed by Li et al.27 In result, only the combined genotype TT/Bb + BB/Ff + ff (adjusted OR = 2.35) could be associated with increased risk when compared to TT/bb/Ff + ff genotype. On the other hand, the haplotype combinations tBF (adjusted OR = 0.52) and tBf (adjusted OR = 0.51) were associated with a 50% risk reduction when compared to Tbf. Furthermore, the combined genotypes Tt + tt/Bb + BB/Ff + ff (adjusted OR = 0.69) and Tt + tt/Bb + BB/FF (adjusted OR = 0.58) turned out to be associated with risk reduction for MM.

ApaI polymorphism.

The ApaI polymorphism (rs7975232) is located as the BsmI polymorphism in intron 8 at the 3′ end of the VDR gene.39

The ApaI polymorphism was investigated in melanoma in one original article (Table 1). It was reported that the BsmI, ApaI and TaqI polymorphisms were in strong LD. Following three haplotypes were seen accounting for 97% of all haplotypes: G-C-T 45%, A-A-C 40%, G-A-T 12% for the BsmI-ApaI-TaqI haplotype (Randerson-Moor et al. 2010). But there was no evidence of any association between any haplotype and melanoma status.17

A recent study has assessed the possible implications of the ApaI polymorphism for solar keratosis (SK) prevalence.40 SKs are established biomarkers for SCC,41,42 representing SCC in situ. In individuals with fair skin, the prevalence of SK was higher in the homozygote groups with AA or aa than in the heterozygote group with Aa (eight-fold vs. five-fold) compared with heterozygote groups.40 So the heterozygote genotype Aa may protect individuals against being affected by SK, in conjunction with skin color or tanning ability.

A-1012G and G-1520C polymorphisms.

The A-1012G polymorphism (rs4516035) is characterized by an adenine (A) to guanine (G) substitution which is located at position 1,012 in the 1A promoter region.22 It was reported that the A allele has a protective effect on susceptibility to non-familial psoriasis and an enhanced effect on vitamin D analog treatment.43

The A-1012G polymorphism was investigated in two original articles and in two reviews (Table 1). The G-1520C polymorphism was investigated in one original article (Table 1).

The A-1012G polymorphism is lying within the core sequence of a putative glutamyl-transfer RNA amidotransferase subunit A 3 (GATA-3) binding site in the A allele. In the G allele this binding site is not present.44 GATA-3 is an important transcription factor directing the polarization of naïve T-cells to T-helper 2-type lymphocytes (Th-2).45 1,25(OH)2D3 has been shown to upregulate the GATA-3 gene expression and the GATA-3 protein promotes polarization to Th-2.46 GATA-3 may produce a positive feedback loop and amplify the GATA-3-induced polarization. So, the A-1012G polymorphism is believed to play an effective role in the anticancer immune response.22 It was shown that the A-1012G polymorphism was strongly associated with MM risk.22 With GG as reference, the A allele was more than 2-fold more frequent in MM patients (OR = 2.5) and when there was homozygosity for this allele (AA genotype) the melanoma risk increased more than 3-fold (OR = 3.3).22 Additionally, the A allele was put into relationship with a thicker Breslow thickness group (p = 0.04) and the development of metastasis (p = 0.008).22 The probability of metastasis at five years was, according to Kaplan Maier, 21% for the AA variant and 9% for the AG variant when compared to the GG genotype. The effect on metastasis was independent of tumor thickness, and the A-1012G polymorphism was considered to have predictive potential, additional to Breslow thickness. Finally, an interaction between the A-1012G and Fok1 polymorphism (p = 0.025) was noticed, which enhanced the effect of the A allele of the A-1012G polymorphism on metastasis increasing the probability of metastasis for the AAff genotype at 5 years up to 57%.22

Recently, a further polymorphism in the 1A promoter region was found. The G-1520C polymorphism (rs7139166) is characterized by a guanine (G) to cytosine (C) substitution at position 1,520 and is in a marked LD with the A-1012G polymorphism (p < 1 × 10−9).18 It was suggested that there is a further GATA binding site in the G allele but not in the C allele18 and that the A allele of the A-1012G polymorphism might be correlated with the G allele of the G-1520C polymorphism. So the G-1520A-1012 haplotype might produce a pair of GATA-3 binding sites and might be a greater risk factor for MM.18 But first investigations showed that the A allele of the A-1012G polymorphism was more frequent in MM patients (p = 0.011) while frequencies of the G-1520C alleles were very similar between patients and controls (p = 0.756).18 The CA haplotype was a risk factor for MM (p = 0.0001) while the CG haplotype protected the carriers (p = 0.014).18 But like the A allele of the A-1012G polymorphism the G allele of the G-1529C polymorphism was also associated with MM metastasis (p = 0.015).18

BglI polymorphism.

The BglI polymorphism (rs739837) is located 303 bp downstream of the stop codon in exon 9. It was investigated in one original article (Table 1).

Data on the BglI polymorphism and skin cancer or cancer in general are still very limited. Barroso et al. observed no statistically association with MM and the BglI polymorphism.15 Only a marginally significant association with fair skin color (p = 0.048) and with Fitzpatrick's phototype I/II (p = 0.070) was seen.15

Cdx2 polymorphism.

The Cdx2 polymorphism (rs11568820) was found through sequence analysis of a targeted area.35 It is a guanine (G) to adenine (A) sequence variation in the promoter area (1e promoter) of the VDR gene, more specifically in a binding site for an intestinal specific transcription factor which is called Cdx2.47 First, it has been found among Japanese women, but it has been shown to be present also among Caucasians as well as other race groups.48 The A allele has been demonstrated to be more active by binding the Cdx2 transcription factor more strongly and by having more transcriptional activity.35 It has been assumed that in consequence, the A allele may result in a higher VDR expression in the intestine and therefore in an increased bone mineral density (BMD) through a better intestinal absorption of calcium.35,48,49

The Cdx2 polymorphism was investigated in one original article and in one review (Table 1).

There was only one study in the review which analyzed the Cdx2 polymorphism.24 But no association between this polymorphism and risk for any type of skin cancer was observed. Recently Randerson-Moor et al. found a strong LD between the Cdx2 and the A-1012G polymorphisms (D = 0.97).17 Following three common haplotypes were seen: G-G 42%, G-A 36% and A-A 21% for the Cdx2 and A-1012G variants respectively.17

Materials and Methods

Search strategy and data extraction.

A systematic review of original articles analyzing the association between VDR polymorphisms and skin cancer risk was performed by searching the PubMed database. The search strategy included the following keywords (variously combined): malignant melanoma, basal cell carcinoma, squamous cell carcinoma, non-melanoma skin cancer (NMSC), VDR, vitamin D receptor, polymorphism, risk, allele and gene. Original and review articles that were published from January 2008 up to December 2010 were sought, and the review articles were used as additional sources for original articles. Cited references from selected articles also were reviewed as appropriate. Data have been extracted taking the following information from each report: authors, journal and year of publication, country of origin, racial descent of study population, number of cases and controls for each VDR genotype. The studies were heterogeneous in terms of number of cases and controls, racial composition and analyzed polymorphisms.

Conclusion

Data summarized in this review show that the vitamin D endocrine system may be of importance for pathogenesis and progression of MM and NMSC. In particular, TaqI, BsmI and FokI polymorphisms of the VDR gene are associated with MM risk. A strong LD has been noticed at the 3′ end of the VDR gene for the BsmI, ApaI and TaqI RFLP's.50 The most frequent haplotypes were baT (48%) and Bat (40%).13 In vitro functional studies have demonstrated that the baT haplotype inserted into transfection constructs resulted in lower reporter gene activity compared with Bat and was associated with low VDR messenger RNA levels.29,51 This reduction in vitamin D activity may lead to an increased melanoma risk.

Furthermore, there is a slight indication of a role of ApaI polymorphism in NMSC development.

However, it has to be noted that, besides VDR polymorphisms, other factors also influence the integrity of the skin's VDES, and may thereby influence skin cancer risk and prognosis. It has been reported that vitamin D serum levels may influence MM risk or prognosis.52,53 Serum 25(OH)D levels were significantly reduced in stage IV melanoma patients as compared to stage I melanoma patients (p = 0.006).52 A trend toward a greater tumor thickness of the primary cutaneous melanomas was seen in the patients with low (<10 ng/ml) serum 25(OH)D levels (median: 2.55 mm) as compared to those with 25(OH)D serum levels >20 ng/ml (median: 1.5 mm), although this difference was not statistically significant (p = 0.078).52 The patients with low 25(OH)D serum levels (<10 ng/ml) had earlier distant metastatic disease (median: 24.37 months) as compared to those with 25(OH)D serum levels >20 ng/ml (median: 29.47 months), although this difference was also not statistically significant (p = 0.641).52

In conclusion, data summarized in this review support the concept that the VDES is of importance for pathogenesis and progression of MM and other types of skin cancer.

Acknowledgments

This work was supported by a grant from the Deutsche Krebshilfe.

Abbreviations

BCC

basal cell carcinoma

BMD

bone mineral density

bp

base pair

CM

cutaneous melanoma

CI

confidence interval

LD

linkage disequilibrium

MM

malignant melanoma

NMSC

non-melanoma skin cancer

OR

odds ratio

p

percentile exceeding probability

RFLP

restriction fragment length polymorphism

SCC

squamous cell carcinoma

SK

solar keratosis

SNP

single nucleotide polymorphism

TNM classification

tumor staging classification

UVR

ultraviolet radiation

VDES

vitamin D endocrine system

VDR

vitamin D receptor

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