Abstract
Two related peptide metabolites, one a cyclic depsipeptide, hoiamide B (2), and the other a linear lipopeptide, hoiamide C (3), were isolated from two different collections of marine cyanobacteria obtained in Papua New Guinea. Their structures were elucidated by combining various techniques in spectroscopy, chromatography and synthetic chemistry. Both metabolites belong to the unique hoiamide structural class, characterized by possessing an acetate extended and S-adenosyl methionine modified isoleucine unit, a central triheterocyclic system comprised of two α-methylated thiazolines and one thiazole, as well as a highly oxygenated and methylated C-15 polyketide unit. In neocortical neurons, the cyclic depsipeptide 2 stimulated sodium influx and suppressed spontaneous Ca2+ oscillations with EC50 values of 3.9 μM and 79.8 nM, respectively, while 3 had no significant effects in these assays.
Cyanobacteria are well recognized to be rich producers of structurally intriguing and biologically active secondary metabolites, many of which have toxic properties.1 Indeed, freshwater cyanobacteria have been studied since the 1930s because their toxins have impacted both human populations as well as domestic animals.2 On the other hand, marine cyanobacteria have been highlighted in the natural products chemistry field because their metabolites have interesting structures and pharmacology, and are thus of high potential pharmaceutical utility. Recognition of this fact began more than 30 years ago with the discovery of majusculamides A and B by R. E. Moore in 1977.3 To date, more than 700 secondary metabolites have been reported with various biological properties including inhibition of microtubules (curacin A),4a–b inhibition of angiogenesis and promotion of actin polymerization (hectochlorin),4c sodium channel blocking (kalkitoxin)4d and activating activities (antillatoxin),4e and G1 cell cycle arrest and induction of apoptosis (apratoxin A).4f–g Biosynthetically, marine cyanobacteria produce secondary metabolites of a variety of structure classes, including peptides, polyketides, terpenoids, and alkaloids. However, the most predominant structure class are lipopeptides, which are formed by the integration of polyketide synthases (PKS) and non-ribosomal peptide synthetases (NRPS).5 More than 36% of the known cyanobacterial secondary metabolites are formed from polyketides transitioning into non-ribosomal peptides, an orientation termed “ketopeptides” (251 compounds), and 9% are peptides transitioning into polyketides, known as “peptoketides” (63 compounds).1 Slightly more than 30% of the ketopeptides and peptoketides are a complex mixture of these non-ribosomal peptide and polyketide components. In addition, cyanobacterial lipopeptides are highly modified by various biosynthetic enzymes in their complicated biosynthetic pathways, including by halogenations, unusual oxidations, and a variety of C-, O- and N-methylations. In some cases, the complex biosynthetic origin and extensive secondary modification of cyanobacterial lipopeptides make their structural elucidation challenging.
The voltage gated sodium channel (VGSC) is an important drug target, and is the site of action for several classes of pharmaceutical agents, including local anesthetics (bupivacaine, cocaine and lidocaine), antiarrhythmics (flecainide and propafenone), anticonvulsants (carbamazepine, phenytoin and valproic acid), and analgesics (ziconotide); new treatments for neurodegenerative disorders are also being developed for this target.6 The VGSC allows passage of Na+ across membranes and thus plays an important role in the generation of action potentials in excitable cells such as neurons.7a In the open state, the pore of the VGSC is open and allows Na+ influx into the cytoplasm of the cell, which then produces a regenerative membrane depolarization. The VGSC complex consists of a large α-subunit, critical for channel pore formation and voltage sensing, and one or two auxillary β-subunits.7a–c VGSCs represent the molecular targets for toxins that act at six or more distinct neurotoxin sites on the channel protein.7d Tetrodotoxin, saxitoxin, and μ-conotoxins GIIIA and GIIIB, binding to neurotoxin site 1, block the channel pore and inhibit sodium flux. Batrachotoxin and veratridine, acting on neurotoxin site 2, inhibit VGSC inactivation. α-Scorpion, δ-conotoxin and the sea anemone toxins, targeting at neurotoxin site 3, also retard inactivation of the VGSC, whereas β-scorpion toxins, interacting with neurotoxin site 4, shift the voltage-dependence of activation to more negative membrane potentials without an effect on channel inactivation. Brevetoxins and ciguatoxins link to neurotoxin site 5 and stimulate channel activity by shifting the activation potential to more negative values and blocking channel inactivation. δ-Conotoxin interacting with neurotoxin site 6, delays channel inactivation. Pyrethroids and DDT are coupled to neurotoxin site 7 and produce effects similar to site 5 toxins.
Recently, we reported a cyclic depsipeptide named hoiamide A (1), which illustrates a new chemotype within the natural products of cyanobacteria and possesses potent neuropharmacological properties.8 It was found that compound 1 inhibits the binding of [3H]batrachotoxin to site 2 of the mammalian VGSC and stimulates sodium influx in neocortical neurons as a partial agonist. Structurally, it possesses a stereochemically complex structure (15 chiral centers) with highly modified peptide and polyketide units as well as an unusual triheterocyclic section.
As a part of an on-going neuropharmacological screening program aimed at discovering additional neurotoxins produced by marine organisms, we investigated the extracts of two independent collections of Papua New Guinea marine cyanobacteria. The first extract, prepared from an assemblage of Symploca sp. and Oscillatoria cf. sp., exhibited potent inhibition of calcium oscillation and activation of sodium influx in mouse neocortical neurons. 1H NMR-guided fractionation of this material afforded the new cyclic depsipeptide hoiamide B (2), along with the known metabolite hoiamide A (1). The second extract, derived from a Symploca sp. specimen, showed mild brine shrimp toxicity and its fractionation led to the discovery of the linear hoiamide C (3). Herein, we report the isolation, structure elucidation and biological activity of hoiamides B (2) and C (3) as the newest members of this unique structural class, the hoiamides.
Results and Discussion
Isolation and Structure Elucidation of Hoiamide B (2)
A collection of tuft-forming marine cyanobacteria was obtained via SCUBA at Gallows Reef, Papua New Guinea in 2006 (PNG-4-28-06-1). The collection was extracted repeatedly with CH2Cl2-MeOH (2:1) and further fractionated by silica gel vacuum column chromatography (VLC) to produce nine fractions (A–I). The F fraction was found to possess potent sodium channel activating activity in neuro-2a cells and inhibited calcium oscillations in mouse cerebrocortical neurons. This fraction was thus subjected to RP HPLC to afford hoiamide B (2, 8.9 mg, 1.2%) as well as the previously reported hoiamide A (1, 25 mg, 3.4%) (Figure 1).8
Figure 1.
Structures of natural hoiamides A–C (1–3) and hoiamide A analogues 48 and 58
Hoiamide B (2) was obtained as a pale yellow oil and its LRESIMS showed a molecular ion cluster at m/z 962.6/963.6/964.5/965.5/966.4 in a ratio of 100:50:29:10:4, indicating the likely presence of three sulfur atoms in the molecule, as found for hoiamide A (1). The molecular formula of 2 was determined as C45H73N5O10S3 by interpretation of HRESITOFMS data ([M+H]+ m/z 940.4584). The IR spectrum of 2 displayed absorption bands at 3375, 1738, and 1604 cm−1, indicating the presence of hydroxy, ester and amide functionalities, respectively. The 1H and 13C NMR spectrum of 2 in DMSO-d6 showed peptide and oxygenated polyketide features, and included seven downfield shifted carbons without attached protons (δC 176.2, 174.4, 173.3, 170.3, 169.8, 165.8 and 161.7), five exchangeable protons (δH 7.84, 6.83, 5.15, 4.92, and 3.97), eight N- or O-substituted methines (δH 5.18, 4.94, 4.51, 4.24, 3.79, 3.77, 3.52, and 3.18), three methyl triplets (δH 0.835, 0.831 and 0.70), seven methyl doublets (δH 1.15, 0.92, 0.87, 0.86, 0.84, 0.82 and 0.73), and three methyl singlets including one methoxy group (δH 3.22, 1.61 and 1.55), as shown in Table 1.
Table 1.
NMR Spectroscopic Data for Hoiamide B (2) in DMSO-d6 at 600 MHz (1H) and 150 MHz (13C).
| residue | position | δC | δH multi (J in Hz) | COSY | HMBCa | ROESY |
|---|---|---|---|---|---|---|
| Thr | 1 | 170.3 | ||||
| 2 | 58.5 | 4.51 dd (7.7, 2.8) | NH, 3 | 1, 3 | 4, 8 | |
| NH, 7.84 d (7.7) | 2 | 3, 5 | 4, 6, 7, 10 | |||
| 3 | 66.3 | 4.24 m | 2, 4, OH | 1, 2, 4 | 8, 37, 43, 3-OH | |
| OH, 4.92 d (5.6) | 3 | |||||
| 4 | 20.2 | 1.15 d (6.3) | 3 | 2, 3 | 2, 37 | |
| Hmpa | 5 | 169.8 | ||||
| 6 | 76.3 | 4.94 d (3.5) | 7 | 5, 11 | 8a, 8b, 9, 10, 2-NH | |
| 7 | 36.4 | 1.91 m | 6, 8, 10 | 5 | 9 | |
| 8a | 22.5 | 1.28 m | 7, 8b | 6 | ||
| 8b | 1.09 m | 7, 8a | 2, 3 | |||
| 9 | 11.5 | 0.70 t (7.4) | 7, 8 | 7 | ||
| 10 | 14.9 | 0.87 d (7.6) | 7 | 6 | ||
| Ahdhe | 11 | 174.4 | ||||
| 12 | 44.4 | 2.32 m | 13, 19 | 11, 13, 14 | 14, 13-OH, 14-NH | |
| 13 | 71.1 | 3.77 m | 12, OH | 11, 12, 14 | 15, 18, 19 | |
| OH, 5.15 d (4.6) | 13 | 12, 13, 14 | 12, 13, 14, 15, 16, 17, 14-NH | |||
| 14 | 52.7 | 3.52 dd (10.2, 6.9) | NH, 15 | 20 | 12, 18, 19 | |
| NH, 6.83 d (9.6) | 14 | 13, 14, 20 | 12, 14, 15, 23, 27, 13-OH | |||
| 15 | 35.7 | 1.56 m | 14, 16a, 16b, 19 | 14, | 13, 13-OH, 14-NH | |
| 16a | 25.2 | 1.42 m | 15, 16b, 17 | 17 | ||
| 16b | 1.05 m | 16a, 17 | 14, 15, 17, 18 | |||
| 17 | 10.6 | 0.834 t (7.0) | 16 | |||
| 18 | 13.7 | 0.92 d (6.9) | 15 | 14, 15 | 13, 14 | |
| 19 | 15.6 | 0.84 d (7.2) | 12 | 11, 12, 13 | 12, 13, 16 | |
| MoCys1 | 20 | 173.3 | ||||
| 21 | 84.7 | |||||
| 22a | 41.1 | 3.82 m | 22b | 20, 21, 24 | ||
| 22b | 3.15 d (11.3) | 22a | 20, 21, 24 | 23 | ||
| 23 | 25.6 | 1.55 s | 20, 21, 22 | 13, 14, 13-OH, 14-NH, 22a, 22b | ||
| MoCys2 | 24 | 176.2 | ||||
| 25 | 83.4 | |||||
| 26a | 42.8 | 3.52 d (11.2) | 26b | 24, 25, 28 | 27 | |
| 26b | 3.43 d (11.2) | 26a | 24, 25, 28 | 27 | ||
| 27 | 24.1 | 1.61 s | 24, 25, 26 | 26a, 26b | ||
| MoCys3 | 28 | 161.7 | ||||
| 29 | 147.7 | |||||
| 30 | 122.8 | 7.94 s | 28, 29, 31 | |||
| Dmetua | 31 | 165.8 | ||||
| 32 | 33.2 | 2.98 d (7.8) | 33 | 31, 33 | 35, 44 | |
| 33 | 79.3 | 3.79 m | 32, 34 | 31, 35, 45 | 35, 44, 45 | |
| 34 | 35.8 | 2.35 m | 33, 35, 44 | 33, 35 | 36, 43, 45 | |
| 35 | 75.2 | 5.18 d (9.7) | 34 | 1, 33, 34, 36, 37, 43 | 32, 33, 37, 38, 44, 37-OH | |
| 36 | 38.2 | 1.72 m | 37, 43 | 37 | 34, 38, 42, 37-OH | |
| 37 | 72.2 | 3.18 d (8.4) | 36, 38 | 35 | 3, 35, 39a, 39b, 43 | |
| OH, 3.97 d (6.0) | 37 | 35, 36, 39a, 39b, 42 | ||||
| 38 | 33.7 | 1.49 m | 37, 39a, 42 | 40 | 36, 43 | |
| 39a | 36.6 | 1.25 m | 38, 39b | 37 | 37, 37-OH | |
| 39b | 1.15 d (6.3) | 38 | 37 | 37 | ||
| 40 | 20.0 | 1.24 m | ||||
| 41 | 14.4 | 0.831 t (6.9) | 39, 40 | |||
| 42 | 12.0 | 0.73 d (6.7) | 38 | 37, 39 | 36, 39a, 37-OH | |
| 43 | 9.9 | 0.82 d (6.8) | 36 | 35, 36, 37 | 3, 34, 37. 38 | |
| 44 | 10.5 | 0.86 d (7.2) | 34 | 33, 35 | 33, 35 | |
| 45 | 56.8 | 3.24 s | 33 | 33, 34 |
From 1H to the indicated 13C.
The analysis of 1D and 2D NMR data, including COSY, TOCSY, HSQC and HMBC, allowed the construction of partial structures A–F, and extensive HMBC analysis provided connections between these six partial structures to afford the planar structure of hoiamide B (2) (Figure 2). The first two peptidic fragments A and B were found to be threonine (Thr), and 2-hydroxy-3-methyl-pentanoic acid (Hmpa) by COSY and HMBC spectra analysis. Similarly, two additional spin systems could be constructed, one composed of a methyl doublet (H-19, δH 0.84), two methines (H-12, δH 2.32; H-13, δH 3.77), and a hydroxy proton (OH-13, δH 2.32), and the other composed of a methyl doublet (H-18, δH 0.92), a methyl triplet (H-17, δH 0.83), two methine protons (H-14, δH 3.52; H-15, δH 1.56), one pair of methylene protons (H-16a, δH 1.42; H-16b, δH 1.05), and one exchangeable proton from an amide (14-NH, δH 6.83). The HMBC correlations from H-13 to C-14, and from NH-14 to C-13 allowed the combination of fragments C and D into a new partial structure comprising 4-amino-3-hydroxy-2,5-dimethyl-heptanoic acid (Ahdhe). A fifth fragment (E) was revealed as possessing three consecutive heterocyclic rings. The 1H and 13C NMR chemical shifts of C-22 (δH 3.82/3.15; δC 41.1) and C-26 (δH 3.52/3.43; δC 42.8) were at shifts consistent with placement of hetero-atoms at these two positions. HMBC correlations from H-22a/H-22b/H-23 to C-20/C-21, from H-26a/H-26b/H27 to C-24/C-25, and from H-30 to C-28/C-29/C-30 allowed assignments of two α-methylated thiazolines and one thiazole. The additional HMBC correlations from H-22a/H-22b to C-24 and from H26a/H26b to C-28 identified that the three heterocyclic rings were successively connected to one another. The final partial structure of compound 2 was elucidated as a 5,7-dihydroxy-3-methoxy-4,6,8-trimethylundecanoyl-derived residue (Dmetua). The methoxy group was placed at C-33 (δC 79.3) by an HMBC correlation from H-45 (δH 3.24) to C-33. COSY correlations helped to assign the terminal chain of four carbons (C-32/C-33/C-34/C-35) with a methyl branch (C-44) at C-34. A second section of partial structure F, assigned by the COSY and HMBC correlations, was composed of a seven-carbon chain (C-43/C-36/C-37/C-38/C-39/C-40/C-41) with hydroxy (C-37) and methyl branches (C-38). These two sections were linked into partial structure F on the basis of HMBC correlations from H-35 to C-36/C-37 and from H-43 to C-35. Finally, the HMBC correlations from NH-2 to C-5, from H-6 to C-11, from NH-14 to C-20, from H-30 to C-31, from H-32/H-33 to C31, and H-35 to C-1 allowed connection of these six partial structures, thereby forming the planar structure of hoiamide B (2) (Figure 2).
Figure 2.
Partial structures of hoiamide B (2) derived from 2D NMR data and their assembly by key HMBC correlations.
The absolute configuration of the sixteen chiral centers in hoiamide B (2) was assigned by various means, including degradation reactions to yield chiral fragments followed by chromatographic analysis, and additional NMR spectroscopic analyses. The absolute configuration of the Thr residue was assigned as L by acid hydrolysis, derivatization with L-FDLA and LC ESIMS analysis. The absolute configuration of the Hmpa residue was determined as 2S, 3S by comparing the retention time of Hmpa released by acid hydrolysis of 2 with the four synthetic stereoisomers of Hmpa by chiral HPLC.9 In order to assign the absolute configuration of the modified cysteic acids, 2 was subjected to ozonolysis, oxidative work up, and acid hydrolysis to yield 2-methyl cysteic acid (MeCysA). The reaction products were then analyzed by chiral HPLC and compared with the retention times of synthetic 2S-MeCysA and 2R-MeCysA standards; only 2S-MeCysA was detected by this analysis. Therefore, the absolute configuration of C-21 and C-25 was assigned as S and R, respectively.
The relative configuration of the Ahdhe (C-11–C-20) and Dmetua (C-31–C-45) units was revealed by J-based configurational analysis (Figure 3). Homonuclear coupling constants were measured from 1H-NMR and 1D-TOCSY spectra whereas heteronuclear coupling constants were measured using a combination of the HETLOC and HSQMBC experiments. The large coupling constant between H-12 and H-13 (3JH-12, H-13 = 7.9 Hz) indicated an anti relationship between these protons, and the ROESY correlations between H-19 and H-13/H-14 led to the assignment of the relative configuration of C-12–C-13 as an erythro rotamer B-3. The small homonuclear and heteronuclear coupling constants between H-13/H-14, H-13/C-15, H-12/C-14 were indicative of the relative configuration between C-13–C-14 being the threo rotamer A-1, and this was consistent with a series of ROESY correlations (H-12/H-14, H-14/H-13, H-13/H-15, H-15/OH-13, and OH-13/NH-14). The relative configuration of C-14/C-15 was assigned as an erythro rotamer B-3 by the large J value between H-14 and H-15 (3JH-14, H-15 = 9.7 Hz) and another series of ROESY correlations (H-14/H-18, H-18/H-13, H-13/H-15, and H-15/14-NH).
Figure 3.
Depiction of homonuclear and heteronuclear coupling constants, and ROE correlations, used to assign the relative stereochemistry of the Ahdhe (C-11–C-19) and Dmetua (C-31–C-45) residues in hoiamide B (2).
Based on the large coupling constants between H-33/H-34, H-34/H-35 and H-36/H-37, in combination with ROESY correlations between the protons associated with these adjacent chiral centers, C-33/C-34, C-34/C-35 and C-36/C-37 were assigned as erythro rotamers B-3. The remaining two pairs of methine centers, namely, C-35/C-36 and C-37/C-38, possessed small 3JHH and large 3JHC couplings (3JH-35C-43 = 8.7 Hz; 3JH-37C-42 = 8.8 Hz), and thus their configurations were both assigned as threo rotamers A-1.
Observation of ROESY correlations between protons of the Ahdhe unit and MoCys1, the latter of which was now of assigned absolute configuration, allowed identification of the four stereocenters present in the Ahdhe unit. Specifically, the exchangeable proton NH-14 correlated with two of methine protons of the Ahdhe unit (H-12 and H-14) as well as the methyl singlet (H-23) of MoCys1. Thus, the absolute configuration of the Ahdhe unit was deduced as 12R, 13S, 14S, and 15S.8
The absolute configuration of the Dmetua portion was revealed by analysis of the Mosher esters produced by esterification of the C-37 hydroxy group of hoiamide B (2). However, the Mosher esterification reactions which yielded the 37-(S/R)-MTPA esters were accompanied by dehydration of the threonine residue, producing the 2,3-dehydrohoiamide B derivatives 6 and 7. Calculation of ΔS-R values around C-37 allowed assignment of its absolute configuration as S, and thus, the absolute configuration of the Dmetua residue was determined as 33S, 34S, 35R, 36S, 37S, and 38R (Figure 4).
Figure 4.
ΔδS-R values around C-37 of the Mosher esters of hoiamide B (6–7).
Isolation, Structure Elucidation, and Semi-synthesis of Hoiamide C (3)
A second mixed collection of marine cyanobacteria, obtained by SCUBA on a reef wall near Pigeon Island, Papua New Guinea, was extracted repeatedly with CH2Cl2-MeOH (2:1) and then fractionated by silica gel vacuum-column chromatography (VLC) to produce nine fractions (A–I). The F fraction, eluting with 80% EtOAc/hexanes, was found to possess potent brine shrimp toxicity (LC50, ca. 5 μg/mL). This material was thus subjected to RP HPLC and yielded a small quantity of hoiamide C (3, 2.9 mg, 0.02%). Pure hoiamide C (3) exhibited an LC50 of 1.3 μM in the brine shrimp toxicity assay.
LRESIMS of hoiamide C (3) yielded an [M+H]+ peak at m/z 771.22 as part of a complex isotopic pattern [m/z 771/772/773/774/775 (100:52:26:11:5)], and thus suggested once again the presence of three sulfur atoms as in hoiamide A (1). This interpretation was confirmed by HREIMS of 3, which gave a molecular ion peak at m/z 770.3743 for a molecular formula of C37H62N4O7S3 (calcd 770.3775) with nine degrees of unsaturation. IR absorptions at 3389 (broad), 1731, and 1656 (broad) cm−1 were consistent with the presence of hydroxy, ester, and amide functionalities, respectively. Furthermore, a UV absorption maximum at 250 nm was essentially identical to that measured for hoiamides A (1) and B (2). On combining this information with a complete NMR data set for 2 (Table 2), it is clear that compound 3 is related to hoiamides A (1) and B (2), but of an overall truncated size.
Table 2.
NMR Spectroscopic Data for Hoiamide C (3) in Pyridine-d5 at 700 MHz (1H) and 175 MHz (13C).
| residue | position | δCa | δH multi (J in Hz) | COSYb | HMBC | ROESY |
|---|---|---|---|---|---|---|
| Ahdhe | 1 | 176.3 | ||||
| 2 | 45.3 | 2.90, m | 3, 9 | 1, 3 | 3 | |
| 3 | 71.7 | 4.43, br d (9.7)c | 2, 4 | 2, 4, 8, 9 | ||
| 4 | 54.1 | 4.13, br t (9.7)c | 3, 5, NH | 5, 8, 10 | 3, 8, 9, NH | |
| NH 7.57, d (9.7) | 4 | 10 | 4 | |||
| 5 | 36.7 | 2.00, m | 4, 8 | |||
| 6a | 26.4 | 1.76, m | 6b, 7 | 6b | ||
| 6b | 1.37, m | 6a, 7 | 7, 8 | 6a, 8 | ||
| 7 | 11.5 | 0.91, t (7.5) | 6a, 6b | 5, 6 | ||
| 8 | 16.0 | 0.95, d (6.7) | 5 | 4, 5, 6 | 3, 4, 6b | |
| 9 | 14.7 | 1.32, d (7.0) | 2 | 1, 2, 3 | 3, 4 | |
| MoCys1 | 10 | 174.7 | ||||
| 11 | 85.7 | |||||
| 12a | 41.9 | 4.18, d (11.5) | 12b | 10, 11, 13, 14 | 12b | |
| 12b | 3.31, d (11.5) | 12a | 10, 11, 13, 14 | 12a, 13 | ||
| 13 | 26.5 | 1.75, s | 10, 11, 12 | 12b | ||
| MoCys2 | 14 | 178.9 | ||||
| 15 | 85.0 | |||||
| 16a | 43.0 | 4.13, d (11.3) | 16b | 14, 15, 17, 18 | 16b | |
| 16b | 3.52, d (11.3) | 16a | 14, 15, 17, 18 | 16a, 17 | ||
| 17 | 27.0 | 2.03, s | 14, 15, 16 | 16b | ||
| MoCys3 | 18 | 163.5 | ||||
| 19 | 148.3 | |||||
| 20 | 122.1 | 8.27, s | 18, 19, 21 | |||
| Dmetua | 21 | 170.4 | ||||
| 22a | 34.2 | 3.49, dd (15.4, 2.2) | 22b, 23 | 21 | 22b, 23, 25 | |
| 22b | 3.13, dd (15.4, 10.6) | 22a, 23 | 21, 23 | 22a, 34 | ||
| 23 | 81.8 | 4.41, ddd (10.6, 3.5, 2.2) | 22a, 22b, 24 | 24, 35 | ||
| 24 | 37.4 | 2.50, m | 23, 25, 34 | 23, 33, 34, 35 | ||
| 25 | 71.6 | 4.39, dd (10.3, 1.3) | 24, 26 | 26, 33, 34 | 22a, 26, 27, 28 | |
| 26 | 37.9 | 2.03, m | 25, 27, 33 | 27, 33 | 25, 27, 32, 34 | |
| 27 | 76.4 | 3.90, dd (7.1, 4.5) | 26, 28 | 25, 26, 29, 32 | 25, 26, 28, 29a, 29b, 33 | |
| 28 | 35.5 | 1.86, m | 24, 29a, 29b, 32 | 29 | 25, 27, 33 | |
| 29a | 37.3 | 1.57, m | 28, 29b, 30 | 30 | 27, 29b | |
| 29b | 1.36, m | 28, 29a | 30 | 27, 29a | ||
| 30 | 20.8 | 1.37, m | 29a, 31 | 29 | ||
| 31 | 14.9 | 0.87, t (7.0) | 30 | 29, 30 | ||
| 32 | 14.2 | 1.14, d (6.7) | 28 | 27, 28, 29 | 26 | |
| 33 | 10.5 | 1.19, d (6.9) | 26 | 25, 26, 27 | 24, 27, 28 | |
| 34 | 10.4 | 0.93, d (7.0) | 24 | 22, 24, 25 | 22b, 24, 26 | |
| 35 | 56.8 | 3.32, s | 23 | 23, 24 | ||
| 36a | 60.5 | 4.17, m | 36b, 37 | 1 | ||
| 36b | 4.11, m | 36a, 37 | ||||
| 37 | 14.6 | 1.11, t (7.1) | 36a, 36b | 36 |
Derived from HSQC and HMBC data.
From 1H to the indicated 13C.
Multiplicity from the z-TOCSY spectrum.
The 1H NMR spectrum of 3 (pyridine-d5) possessed resonances for a methoxy singlet at δH 3.32, three methyl triplets at δH 1.11, 0.91, and 0.87, five methyl doublets between δH 1.32 and 0.93, and multiple oxymethine resonances between δH 4.50 and 2.50, suggesting polyketide-derived substructures closely related to Ahdhe and Dmetua. Additionally, two methyl singlets at δH 2.03 and 1.75, as well as an aromatic proton singlet at δH 8.27, confirmed the presence of a cysteine-based triheterocyclic ring system as found in hoiamides A (1) and B (2). Extensive analysis by HSQC, HMBC, COSY, and z-TOCSY experiments revealed the planar structure of a new linear hoiamide analogue, named hoiamide C (3).
A first inspection of the HMBC data involved analysis of long-range correlations to the various methyl group protons, each of which showed a full complement of two- and three-bond correlations with their neighboring carbon atoms, and led to the identification of partial structures A–E (Figure 5). Additional connections were made by COSY, such as between C-3 and C-4 as revealed by correlations between H-3 (δH 4.43) and H-4 (δH 4.13). An HMBC correlation between H-36 (δH 4.17/4.11) and C-1 (δC 176.3), along with the chemical shift of C-36 (δC 60.5), indicated the presence of an ester linkage between C-1 and C-36. The chemical shifts of C-3 (δC 71.7), C-23 (δC 81.8), C-25 (δC 71.6), and C-27 (δC 76.4), suggested directly linked oxygen atoms to each of these methines. In contrast, the chemical shift of C-4 (δC 54.1) was more appropriate for a nitrogen-linked carbon, and this was confirmed by observation of vicinal coupling between the NH doublet at δH 7.57 (NH at C-4) and the methine proton at δH 4.13 (H-4) by COSY. In addition, HMBC correlations involving both the NH proton (δH 7.57) and H-4 (δH 4.13) with the carbonyl carbon atom C-10 (δC 174.7) suggested an adjacent amide functional group.
Figure 5.
Selected HMBC, 15N HMBC and COSY correlations involved in building and interconnecting partial structures A–E of hoiamide C (3).
Structure elucidation of the central triheterocyclic partial structure of compound 3 was greatly facilitated by a combination of HMBC and 15N HMBC experiments. The H-13 methyl protons, resonating as a singlet at δH 1.75, exhibited HMBC correlations with the amide carbon atom C-10 (δC 174.7), a quaternary carbon atom at δC 85.7 (C-11), and a methylene carbon atom at δC 41.9 (C-12). In addition, an 15N HMBC experiment displayed a correlation between H3-13 and a nitrogen atom resonating at δN -76.1 (see Supporting Information). The chemical shift of protons at C-12 (δH 4.18/3.31) suggested an adjacent heteroatom, which, on the basis of the chemical shift of C-12 (δC 41.9), was deduced to be a sulphur atom. Both protons at C-12 showed reciprocal HMBC correlations with C-13 and C-11, and also with a quaternary sp2 carbon atom at δC 178.9 (C-14). The deshielded chemical shift of this latter carbon atom suggested a link with the δN -76.1 nitrogen atom, and thus described a methylthiazolene ring. Likewise, HMBC correlations of H3-17 (δH 2.03) with C-14 (δC 178.9), C-15 (δC 85.0), C-16 (δC 43.0), and a second nitrogen at δN -70.7, as well as those of H2-16 (δH 4.13/3.52) with C-17 (δC 27.0), C-14 (δC 178.9), C-15 (δC 85.0), and C-18 (δC 163.5), were indicative of a second methylthiazolene ring. The last heterocycle in the system, a thiazole ring, was indicated by HMBC correlations of the aromatic proton H-20 (δH 8.27) with C-18 (δC 163.5), C19 (δC 148.3), and C-21 (δC 170.4). With this latter thiazole ring described, all of the required degrees of unsaturation were satisfied. COSY provided evidence of vicinal coupling between H-23 (δH 4.41) and both diastereotopic protons at H2-22 (δH 3.49/3.13); in turn, these methylene protons also displayed HMBC correlations with the sp2 carbon atom at δC 170.4 (C-21) of the adjacent thiazole ring. These latter connections linked the triheterocyclic ring portion with the polyketide section, and thus completed the planar structure of hoiamide C (3) (Figure 5).
Owing to the limited quantity of hoiamide C (3) at this point in the structure elucidation, we prioritized evaluation of its biological properties over chemical degradation studies. However, we envisioned a possible semi-synthetic strategy to produce 3 from hoiamide A (1) via regioselective hydrolysis of both ester bonds using LiOH, followed by esterification of the resulting free carboxylic acid with ethanol in the presence of catalytic HCl (Figure 6a). This sequence of reactions was performed with hoiamide A (1), and the resulting semi-synthetic compound proved to be identical by 1H and 13C NMR (Figure 6b), IR, UV, MS and HPLC comparison with the material extracted from Symploca sp., confirming the structure proposed for the natural product 3. Furthermore, positive specific rotation values and comparable circular dichroism curves (Supporting Information) for both semi-synthetic and natural hoiamide C (3) confirmed that both hoiamide A and C possess the same configuration at their comparable stereocenters. Thus, hoiamide C (3) was shown to possess 2R, 3S, 4S, 5S, 11S, 15R, 23S, 24R, 25R, 26S, 27S and 28R absolute configuration.
Figure 6.
(a) Route for the semi-synthesis of hoiamide C (3) from hoiamide A (1); (b) ΔδC of natural and semi-synthetic hoiamide C (3).
Biosynthetic Prediction of Hoiamides B (2) and C (3)
Hoiamides A–C (1–3) are interesting representatives of a new natural product class deriving from integration of PKS and NRPS biosynthetic pathways. The Dmetua residue is a highly oxidized and branched polyketide chain, and is predicted to be the initial biosynthetic unit formed in the hoiamides. The remnant oxidations on the chain are likely reflections of C-1 positions in the acetate subunits. Conversely, the methyl groups all occur at predicted C-2 positions of the acetate subunits, and thus are likely incorporated from the methyl group of S-adenosyl methionine (SAM). Perhaps most interesting in this section of the molecule is the observation that the Dmetua fragment consists of an eleven-carbon unbranched chain. While conceivably deriving from a propionate starter unit followed by four acetate extensions (from malonyl CoA), its origination from SAM methylation of a acetate starter unit, favored because (a) utilization of propionate is essentially unknown in cyanobacterial polyketides,10 and (b) there is precedence for this type of transformation from biosynthetic labeling experiments with homo-anatoxin A11 as well as unpublished work on apratoxin A biosynthesis in our laboratory. The three consecutive heterocyclic rings are likely created from three cysteine residues by heterocyclization followed by either dehydration to form the thiazole or stereoselective methylation of the alpha carbon to produce the two α-methyl thiazolines. Following this section is the Ahdhe fragment, which is likely created from an isoleucine residue extended by an acetate unit. In this case, it is predicted that the C-2 position of the acetate unit is methylated by SAM followed by reduction of the carbonyl group to a secondary alcohol.5 While the Ahdhe residue of hoiamide C (3) is capped as the ethyl ester (possibly an artefact from EtOH extraction), in hoiamides A (1) and B (2) this group is extended by connection to the hydroxy-acid hydroxyisovaleric acid (Hiva) or hydroxymethylpentanoic acid (Hmpa), respectively. From our genetic work with the hectochlorin biosynthetic pathway, it is predicted that these two residues are selected initially for incorporation as the corresponding α-keto acids and then reduced while tethered to the corresponding Peptidyl Carrier Protein (PCP).12 The predicted pathways to both hoiamides A (1) and B (2) conclude with incorporation of the standard amino acid, L-threonine. Finally, the hydroxy group at C-35 in the Dmetua portion of hoiamide B (C-34 in hoiamide A) likely participates in a thioesterase-mediated hydrolysis of the chain from the final PCP with coincident lactonization, thereby forming the 26-membered macrocyclic ring.
Taxonomy of the Hoiamide-producing Cyanobacterial Strains
The two cyanobacteria that produced hoiamides B (2) and C (3) were taxonomically compared with the hoiamide A (1)-producing strain. Hoiamide A (1) was originally isolated from a consortium of two different filamentous cyanobacteria identified as Lyngbya majuscula (Harvey ex Gomont) and Phormidium gracile (Meneghini ex Gomont) on the basis of morphology.8 This cyanobacterial assemblage was predominantly composed of fine Phormidium filaments entangled into thick pads that contained embedded thicker reddish Lyngbya filaments. As a result of these entangled filaments, this Phormidium/Lyngbya consortium formed extensive mats with cespitose short purple tufts. The hoiamide B (2)-producing cyanobacterium, PNG06-64, was collected as dark red-brownish mats covering the coral reefs and its overall growth morphology resembled that of the hoiamide A producer (Figure 7a). Interestingly, the hoiamide C producer possessed a distinctly different thallus morphology compared with the hoiamide A and B producers. The hoiamide C producer formed erect bundles of a red-brownish purple color (Figure 7b).
Figure 7.
Maximum-likelihood (PhyML) phylogenetic analysis of the hoiamide-producing cyanobacteria based on SSU (16S) rRNA nucleotide sequences. The specimens are indicated as species, strain, and acc. nr in brackets. Specimens designated with an asterisk represent type-strains obtained from Bergey’s Manual. The support values are indicated as boot-strap (PhyML) and posterior probability (MrBayes). The scale bar is indicated at 0.04 expected nucleotide substitutions per site. Underwater field images of (A) the hoiamides A–B producer and (B) the hoiamide C producer. Microscopic images of (C) hoiamides A–B and (D) hoiamide C producer.
Microscopically, the three different hoiamide producers appeared similar with the vast majority of the biomass composed of fine entangled filaments (7–10 μm) with isodiametric or slightly longer cells. This description corresponds with the Phormidium morpho-type previously described from the hoiamide A producer (Figure 7c–7d). Embedded in the Phormidium of the hoiamide A and B producers were also wider reddish filaments with disk-shaped cells surrounded by distinct sheaths, which corresponded with the Lyngbya morpho-type (Figure 7c inset).
The hoiamide B and C producers were phylogenetically analyzed based on their SSU (16S) rRNA genes to obtain a better understanding of their evolutionary relationships and taxonomic positions. The resulting phylogenies revealed that the Phormidium morpho-types are related evolutionarily to various specimens of Symploca, including the type-strain PCC 8002 and, thus, should be re-classified as Symploca. The morphologically similar genera Phormidium and Symploca both belong to the family Phormidiaceae (Anagnostidis et Komárek, 1998) and are distinguished traditionally by their thallus morphology. According to these systems, the hoiamide A and B producers formed mats corresponding with the definition of Phormidium while the hoiamide C formed erect bundles corresponding to the genus Symploca. However, our phylogenetic analysis revealed that both the hoiamide B and C producers belong to the genus Symploca, and it is suggested that this traditional diacritical feature is taxonomically uninformative and needs to be reconsidered. Along the same lines, the Lyngbya morpho-type present in the mat producing hoiamide B was found by 16S rRNA analysis to be closely related to the Oscillatoria type-strain PCC 7515. Thus, while these two latter genera can have very similar overall morphologies, our genetic analysis reveals the thicker filaments in the mat to be Oscillatoria.
Whether the biosynthesis of the hoiamides occurs in Oscillatoria or Symploca can only be speculated upon at this point. The fact that Symploca was the major component of all three samples, and that Oscillatoria was only present in the hoiamide A (1) and B (2) producers, suggests that Symploca is likely the origin of these unusual metabolites. However, conflicting with this hypothesis is the considerable evolutionary distance between the Symploca specimens present in these three samples. In this regard, it is conceivable that an Oscillatoria spp. was originally present in the hoiamide C-producing collection, but that it was not observed due to the small size of the retained voucher sample.
Bioactivity of the Hoiamides
The biological properties of hoiamides A–C (1–3), as well as two semisynthetic derivatives (compounds 4 and 5) are summarized in Table 3. Both hoiamides A (1) and B (2) stimulated sodium influx with EC50 values of 1.7 and 3.9 μM, respectively, in mouse neocortical neurons. Previously, we have demonstrated that hoiamide A is a sodium channel neurotoxin site 2 partial agonist.8 Given the structural similarity between hoiamides A and B and comparable ability to stimulate sodium influx, it is reasonable to conclude that hoiamide B is also a site 2 sodium channel activator. Additionally, hoiamides A (1) and B (2) were both found to potently suppress spontaneous calcium oscillations in neocortical neurons with EC50 values of 45.6 and 79.8 nM, respectively (Figure 8). The effects of hoiamide A and B on spontaneous calcium oscillations are therefore of greater potency than their respective effects on sodium influx. This inhibitory effect on spontaneous calcium oscillations is not related to their ability to activate voltage-gated sodium channels, inasmuch as sodium channel activators actually enhance calcium oscillation amplitude and frequency in low concentrations and produce a sustained elevation of cytoplasmic calcium concentration at higher concentrations.13 Synchronized Ca2+ oscillations in neurons in culture is considered to be neuronal network phenomenon that is dependent on voltage-gated sodium channel mediated action potentials.14 Although the mechanism(s) underling hoiamide A (1) and B (2) induced inhibition of calcium oscillations is presently unknown, these natural products may disrupt the neurotransmission that drives a neuronal network function. Interestingly, switching from a Hiva residue in 1 to a Hmpa residue in 2 significantly decreased cytotoxicity levels in the Neuro-2a neuroblastoma cell line. The linear analogue hoiamide C (3) and the cyclic triacetylated derivative (5), however, showed no significant pharmacological activity in these assays, clearly suggesting that the macrocycle and its hydrogen bond donors at C-3, C-13 and C-37 in 1 and 2, play a key role in their interactions with molecular targets. This is also true for analogue 4, which additionally shows that modifying the alkyl side chain by esterification of the C-37 hydroxy group of hoiamide A (1) decreases cytotoxicity significantly (no cytotoxicity observed up to 27.0 μM), and thus allowed a low micromolar VGSC activation to be measured for this derivative in mouse neuroblastoma cells (IC50 3.3 μM). This result correlates with the VGSC activation measured in mouse neocortical neurons (IC50 9.3 μM), and suggests that the hoiamides may have more than one molecular target in cells that separately involve suppression of Ca2+ oscillations and VGSC activation.
Table 3.
Biological activities of naturally occurring hoiamides A–C (1–3) and derivatives 4 and 5.
| Compound | Inhibition of Ca2+ oscillationsa (IC50 nM, 95% CI) | Activation of VGSCa (IC50 μM, 95% CI) | H-460b (IC50 μM) | Neuro-2ac (IC50 μM) |
|---|---|---|---|---|
| 1 | 45.6 (30.3–68.6) | 1.7 (0.7–4.2) | 11.2 | 2.1c |
| 2 | 79.8 (29.5–215.5) | 3.9 (1.2–13.0) | 8.3 | Inactive |
| 3 | Inactive | Inactive | Inactive | Inactive |
| 4 | 87.3 (19.8–385.0) | 9.3 (1.0–90.0) | Inactive | 3.4d |
| 5 | Inactive | Inactive | Inactive | Inactive |
Mouse neocortical neurons.
Cytotoxicity to human lung adenocarcinoma cells.
Cytotoxicity to mouse neuroblastoma cells.
VGSC activation in mouse neuroblastoma cells.
Figure 8.

Concentration-response relationships for suppression of spontaneous Ca2+ oscillations in neocortical neurons by various hoiamide analogues.
Experimental Section
General Experimental Procedures
Optical rotations were measured on a JASCO P-2000 polarimeter, UV spectra on a Beckman Coulter DU800 spectrophotometer, and IR spectra on a Nicolet ThermoElectron Nicolet IR100 FT-IR spectrometer using KBr plates. NMR spectra were recorded with DMSO (δC 39.5, δH 2.50), pyridine (δC 150.3, δC 135.9, δC 123.9, δH 8.73, δH 7.56, δH 7.21) or chloroform as internal standards (δC 77.2, δH 7.26), on a Bruker 600 MHz spectrometer (600 and 150 MHz for 1H and 13C NMR, respectively), equipped with 1.7 mm MicroCryoProbe or Varian 700 MHz spectrometer (700 and 175 MHz for 1H and 13C NMR, respectively), with a 5 mm HCN Cold Probe. 15N NMR spectra were referenced to CH3NO2 from the observed dimension. LR- and HRESIMS were obtained on a ThermoFinnigan LCQ Advantage Max mass detector and Agilent 6200 ESI-TOF mass spectrometer, respectively. HREIMS spectra were obtained also on a ThermoFinnigan MAT900XL mass spectrometer. HPLC was carried out using a Waters 515 pump system with a Waters 996 PDA detector.
Cyanobacterial Collections and Taxonomic Identification
The hoiamide B (2)-producing cyanobacterium (collection code: PNG-4-28-06-1) was collected by SCUBA at a depth of 15–18 m at the Gallows Reef of Papua New Guinea, in April 2006 (150°44.878′E, 10°15.612′S). The hoiamide C (3)-producing cyanobacterium (collection code: PNG-5-19-05-7) was collected by SCUBA on 10 m deep reef wall near Pigeon Island, Papua New Guinea, in May 2005 (152°20.266′E, 4°16.0.63′S). Morphological characterization was performed using an Olympus IX51 epifluorescent microscope (100×) equipped with an Olympus U-CMAD3 camera. Taxonomic identification of cyanobacterial specimens was performed in accordance with current phycological systems.15
Polymerase Chain Reaction (PCR) and Cloning
Approximately 50 mg of algal biomass was cleaned and pretreated using TE (10 mM Tris; 0.1M EDTA; 0.5% SDS; 20 μg/mL RNase)/lysozyme (1 mg/mL) at 37 °C for 30 min followed by incubation with proteinase K (0.5 mg/mL) at 50 °C for 1 h. Genomic DNA was extracted using the Wizard® Genomic DNA Purification Kit (Promega Inc., Madison, WI) following the manufacturer’s specifications. DNA concentration and purity was measured on a DU® 800 spectrophotometer (Beckman Coulter). The 16S rRNA genes were PCR-amplified from isolated DNA using the modified lineage-specific primers, 106F 5′-CGGACGGGTGAGTAACGCGTGA-3′ and 1509R 5′-GGCTACCTTGTTACGACTT-3′/1445R 5′-GGTAACGACTTCGGGCGTG-3′. The PCR reaction volumes were 25 μL containing 0.5 μL (~50 ng) of DNA, 2.5 μL of 10 × PfuUltra IV reaction buffer, 0.5 μL (25 mM) of dNTP mix, 0.5 μL of each primer (10 μM), 0.5 μL of PfuUltra IV fusion HS DNA polymerase and 20.5 μL H2O. The PCR reactions were performed in an Eppendorf® Mastercycler® gradient as follows: initial denaturation for 2 min at 95 °C, 25 cycles of amplification, followed by 20 sec at 95 °C, 20 sec at 50 °C and 1.5 min at 72 °C, and final elongation for 3 min at 72 °C. PCR products were purified using a MinElute® PCR Purification Kit (Qiagen) before subcloning using the Zero Blunt® TOPO® PCR Cloning Kit (Invitrogen) following the manufacturer’s specifications. Plasmid DNA was isolated using the QIAprep® Spin Miniprep Kit (Qiagen) and sequenced with M13 primers. The 16S rRNA gene sequences are available in the DDBJ/EMBL/GenBank databases under acc. No. HM072001–HM072003.
Phylogenetic Inferences
All gene sequences were aligned using MUSCLE v4.016 and refined using the SSU secondary structures model for Escherichia coli J01695.17 Best-fitting nucleotide substitution models optimized by maximum likelihood were selected using corrected Akaike/Bayesian Information Criterion (AIC/BIC) in ModelTest 3.7.18 The evolutionary histories of the cyanobacterial genes were inferred using Maximum likelihood (ML) and Bayesian inference algorithms. The Maximum likelihood (ML) inference was performed using PhyML v2.4.4.19 The analysis was run using the GTR+I+G model (selected by AIC and BIC criteria) assuming a heterogeneous substitution rates and gamma substitution of variable sites (proportion of invariable sites (pINV) = 0.529, shape parameter (α) = 0.453, number of rate categories = 4). Bootstrap resampling was performed on 500 replicates. Bayesian analysis was conducted using MrBayes 3.1.20 The Bayesian inference was performed using the GTR+I+G substitution model (pINV = 0.450, α = 0.449, number of rate categories = 4) with Markov chains (one cold and three heated) ran for 3,000,000 generations. The first 25% were discarded as burn-in and the following data set were being sampled with a frequency of every 100 generations. The MCMC convergence was detected by AWTY.21
Isolation of Hoiamide B (2)
The cyanobacterial tissue (141 g, dry wt.) was extracted repetitively with 2:1 CH2Cl2-MeOH to afford 900 mg of crude extract. A portion of the extract (761 mg) was fractionated by silica gel VLC with a stepwise gradient solvent system of increasing polarity starting from 10% EtOAc in hexanes to 100% MeOH, to produce nine fractions (A–I). The fraction eluting with 80% EtOAc in Hex (fraction F) was separated subsequently using RP HPLC (Phenomenex Jupiter 10 μm C18, 250 × 10 mm, 85% MeOH/H2O at 3 mL/min, detection at 228, 254 and 280 nm) to give pure hoiamide A (1, 21 mg, 2.8%) and hoiamide B (2, 8.9 mg, 1.2%).
Hoiamide B (2): pale yellow oil; [α]D25 +5.0 (c 0.3, CHCl3); UV (MeCN) λmax 250 nm (log ε 3.86); IR (KBr) νmax 3386, 2966, 2933, 1742, 1672 cm−1; 1H, 13C and 2D NMR data, see Table 1; HRESIMS m/z [M+H]+ 940.4584 (calcd for C45H73N5O10S3 940.4598).
Acid Hydrolysis and Marfey’s Analysis.22
Hoiamide B (2, 150 μg) was treated with 150 μL of 6 N HCl at 110 °C for 30 min. The reaction product was obtained by lyophilization, and the residue was dissolved in 150 μL of water. An aliquot (100 μL) of the resuspended residue was transferred into a 1.5 mL glass vial and dried. The dried hydrolysate was dissolved in 100 μL of 1 M sodium bicarbonate and then 25 μL of 1% L-FDLA (1-fluoro-2,4-dinitrophenyl-5-L-leucine amide) was added in acetone. The solution was vortexed and incubated at 40 °C for 60 min. The reaction was quenched by the addition of 50 μL of 2 N HCl, and then the reaction mixture was diluted with 100 μL of MeOH and 10 μL of the solution was analyzed by LC-ESIMS.
The reaction products from advanced Marfey’s method were separated on RP HPLC column (Phenomenex Jupiter 5 μm C18 column, 4.6 × 250 mm, 5.0 μm) with a stepped gradient elution of 0.1% TFA in water (eluent A) and 100% MeCN (eluent B). Gradient program: 0–5 min, B, 30%; 5–25 min, B, 30–70%; 25–30 min, B, 70%; 30–35 min, B, 100%; flow rate, 500 μL/min. The column temperature was kept at 30 °C. The amino acids, derivatized with advanced Marfey’s reagents, were detected using ESIMS. The retention times of authentic amino acid L-FDLA derivatives were L-Thr (19.63 min), L-allo-Thr (20.45 min), D-allo-Thr (21.45 min), and D-Thr (23.05 min).
Preparation and Chiral Analysis of 2-Hydroxy-3-methyl-pentanoic Acid (Hmpa).9
L-Ile (20 mg) was dissolved in 5 mL of cold (0 °C) 0.2 N HClO4 and then 2 mL of aq. NaNO2 were added with rapid stirring. The reaction mixture was stored at room temperature until evolution of N2 subsided (1 h). The solution was boiled for 3 min and cooled to room temperature, and then saturated with NaCl. The mixture was extracted three times with Et2O and the Et2O layer was then dried under N2 (g) to give 17.3 mg of the oily 2S,3S-Hmpa. Correspondingly, 2R,3R-Hmpa (16.2 mg), 2S,3R-Hmpa (13.1 mg), and 2R,3S-Hmpa (15.6 mg) were synthesized with the same procedure from D-Ile, L-allo-Ile, and D-allo-Ile, repectively. Each authentic stereoisomer of Hmpa was dissolved in aq. 2 mM CuSO4 with retention times measured by chiral HPLC (Phenomenex, Chirex-D-Penicillamine, 4.6 × 50 mm, 0.8 mL/min, 87.5% 2 mM aq. CuSO4 in MeCN). The retention time of the Hmpa residue in acid hydrolysate of 2 matched with 2S,3S-Hmpa (24.1 min; 2S,3R-Hmpa, 20.9 min; 2R,3S-Hmpa, 31.6 min; 2R,3R-Hmpa, 37.0 min).
Ozonolysis, Oxidation, Acid Hydrolysis, and Chiral HPLC
A portion (800 μg) of 2 was dissolved in 2 mL of CH2Cl2 at room temperature and O3 was bubbled through the sample for 15 min. The pale blue solution was dried under N2 (g), resuspended in 200 μL of mixed oxidation solution (H2O2-HCOOH, 1:2), incubated at 70 °C for 20 min, and then dried under N2 (g). The products were resuspended in 200 μL of 6 N HCl and reacted at 110 °C for 2 h. The acid hydrolysates were dried under N2 (g), dissolved in 2 mM aq. CuSO4, and injected over chiral HPLC (Phenomenex, Chirex-D-Penicillamine, 4.6 × 50 mm, 0.3 mL/min, 85% 2 mM aq. CuSO4 in MeCN). Synthetic standards of 2S-methyl cysteic acid (MeCysA) and 2R-MeCysA were prepared by Pattenden’s method.23 The retention time of products resulting from the acid hydrolysate of 2 matched the synthetic 2S-MeCysA standard (9.8 min; 2R-MeCysA, 11.0 min).
Preparation of MTPA Ester of Hoiamide B
Duplicate samples of compound 2 (1 mg) were dried and dissolved in 1 mL of anhydrous pyridine and a catalytic amount of DMAP (dimethyl amino pyridine) was added. Separately and into each vial, 15 μL of R-MTPA chloride and 15 μL of S-MTPA chloride were added. The reaction vials were stored at 40 °C for 72 h with stirring. The acylation products were purified using RP HPLC (Phenomenex Jupiter 5 μm C18, 4.6 × 250 mm, 85% MeOH/H2O with at 1 mL/min). The m/z values of the two diastereomeric MTPA derivatives of compound 2 were observed by ESIMS, and the 1H NMR spectrum was assigned by 2D NMR experiments including TOCSY, HSQC, and HMBC.
37-S-MTPA Ester of the 2,3-Dehydro Derivative of Hoiamide B (6)
Pale yellow amorphous solid; 1H NMR (CDCl3, 600 MHz) δH 8.70 (1H, brs, NH-2), 7.79 (1H, s, H-30), 6.90 (1H, q, J = 7.1 Hz, H-3), 6.77 (1H, d, J = 10.1 Hz, NH-14), 5.09 (1H, d, J = 4.1 Hz, H-6), 4.96 (1H, d, J = 9.3 Hz, H-37), 4.79 (1H, d, J = 10.2 Hz, H-35), 3.97 (1H, dd, J = 8.2, 8.0 Hz, H-13), 3.86 (1H, brs, OH-13), 3.82 (1H, d, J = 11.6 Hz, H-22a), 3.79 (1H, d, J = 10.5 Hz, H-33), 3.74 (1H, dd, J = 9.5, 8.7 Hz, H-14), 3.69 (1H, d, J = 11.4 Hz, H-26a), 3.32 (1H, d, J = 11.4 Hz, H-26b), 3.25 (1H, d, J = 11.6 Hz, H-22b), 3.17 (3H, s, H-45), 2.78 (1H, d, J = 15.4 Hz, H-32a), 2.70 (1H, dd, J = 15.3, 10.2 Hz, H-32b), 2.48 (1H, dq, J = 7.1, 7.1 Hz, H-12), 2.32 (1H, ddq, J = 10.4, 3.7, 6.9 Hz, H-34), 2.11 (1H, m, H-7), 2.08 (1H, m, H-36), 1.84 (3H, s, H-27), 1.76 (3H, d, J = 7.1 Hz, H-4), 1.74 (1H, m, H-38), 1.68 (1H, m, H-8a), 1.55 (3H, s, H-23), 1.44 (1H, m, H-15), 1.40 (1H, m, H-16a), 1.31 (3H, d, J = 7.1 Hz, H-19), 1.30 (2H, m, H-39), 1.30 (2H, m, H-40), 1.26 (1H, m, H-8b), 1.07 (1H, m, H-16b), 1.02 (3H, d, J = 6.9 Hz, H-10), 0.97 (3H, d, J = 7.1 Hz, H-43), 0.89 (3H, t, J = 7.2 Hz, H-9), 0.88 (3H, d, J = 6.9 Hz, H-18), 0.85 (3H, t, J = 7.1 Hz, H-41), 0.82 (3H, d, J = 6.8 Hz, H-42), 0.77 (3H, t, J = 7.4 Hz, H-17), 0.72 (3H, d, J = 6.9 Hz, H-44); LRESIMS m/z 1138.57 [M+H]+, 1160.58 [M+Na]+.
37-R-MTPA Ester of the 2,3-Dehydro Derivative of Hoiamide B (7)
Pale yellow amorphous solid; 1H NMR (CDCl3, 600 MHz) δH 8.72 (1H, brs, NH-2), 7.78 (1H, s, H-30), 6.86 (1H, q, J = 7.0 Hz, H-3), 6.79 (1H, d, J = 10.2 Hz, NH-14), 5.08 (1H, d, J = 4.1 Hz, H-6), 4.95 (1H, dd, J = 9.6, 2.0 Hz, H-37), 4.75 (1H, d, J = 10.4 Hz, H-35), 3.96 (1H, dd, J = 7.7, 7.7 Hz, H-13), 3.92 (1H, brs, OH-13), 3.83 (1H, d, J = 11.6 Hz, H-22a), 3.77 (1H, d, J = 10.1 Hz, H-33), 3.75 (1H, dd, J = 9.5, 8.7 Hz, H-14), 3.68 (1H, d, J = 11.3 Hz, H-26a), 3.33 (1H, d, J = 11.4 Hz, H-26b), 3.24 (1H, d, J = 11.6 Hz, H-22b), 3.17 (3H, s, H-45), 2.78 (1H, d, J = 15.2 Hz, H-32a), 2.68 (1H, dd, J = 15.4, 10.3 Hz, H-32b), 2.48 (1H, dq, J = 7.1, 7.1 Hz, H-12), 2.30 (1H, ddq, J = 10.5, 3.7, 6.9 Hz, H-34), 2.11 (1H, m, H-7), 2.08 (1H, m, H-36), 1.83 (3H, s, H-27), 1.77 (1H, m, H-38), 1.75 (3H, d, J = 7.1 Hz, H-4), 1.68 (1H, m, H-8a), 1.55 (3H, s, H-23), 1.49 (1H, m, H-15), 1.43 (1H, m, H-16a), 1.32 (2H, m, H-39), 1.30 (2H, m, H-40), 1.30 (3H, d, J = 7.1 Hz, H-19), 1.25 (1H, m, H-8b), 1.08 (1H, m, H-16b), 1.02 (3H, d, J = 6.9 Hz, H-10), 0.94 (3H, d, J = 7.1 Hz, H-43), 0.92 (3H, d, J = 6.6 Hz, H-18), 0.91(3H, t, J = 7.5 Hz, H-9), 0.86 (3H, d, J = 6.9 Hz, H-42), 0.83 (3H, t, J = 7.1 Hz, H-41), 0.80 (3H, t, J = 7.4 Hz, H-17), 0.71 (3H, d, J = 6.9 Hz, H-44); LRESIMS m/z 1138.56 [M+H]+, 1160.47 [M+Na]+.
Isolation of Hoiamide C (3)
The cyanobacterial filaments (approximately 81 g, dry wt.) were extracted repeatedly with CH2Cl2/MeOH (2:1) to afford 1.42 g of crude extract. A portion of the extract (1.19 g) was fractionated by silica gel VLC with a stepped gradient elution of hexanes, EtOAc and MeOH. The bioactive fraction F (79.2 mg) was subjected to RP HPLC (Phenomenex Jupiter 10 μm C18, 10 × 250 mm, 65% MeCN/H2O at 3 mL/min, detection at 228, 254, and 280 nm) to yield 2.9 mg of hoiamide C (3).
Hoiamide C (3): colorless oil; [α]23D +16 (c 0.2, CHCl3); CD λ 295 nm (Δε −0.21), λ 280 nm (Δε −0.11), λ 245 nm (Δε −0.37), λ 220 nm (Δε +2.42); UV (MeCN) λmax 249 nm (log ε 3.66); IR (neat) νmax 3389, 2925, 2853, 1731, 1656, 1520, 1182, 1084, 735 cm−1; 1H and 13C NMR data, see Table 2; HREIMS m/z [M]+ 770.3743 (calcd for C37H62N4O7S3, 770.3775).
Preparation of Hoiamide C (3) from Hoiamide A (1)
Hoiamide A (10.1 mg, 0.011 mmol) was dissolved in a mixture dioxane-H2O 2:1 (3 mL), and treated with LiOH monohydrate (10.0 mg, 0.21 mmol) at 25 °C. The mixture was stirred at room temperature until TLC (70% EtOAc in hexanes) showed the absence of starting material (1 h). The solvent of mixture was then removed under reduced pressure, and the resulting residue was redissolved in EtOH (15 mL), treated with 12 N HCl (5 μL, 0.06 mmol) at 25 °C, and stirred at the same temperature until TLC showed the appearance of a new product (72 h). At this point, the crude reaction was concentrated to dryness, reconstituted in H2O, and extracted with EtOAc (3 × 20 mL). The organic layer was dried (Na2SO4), filtered, and, upon solvent removal under vacuum, the resulting residue was purified via silica gel column chromatography (70% EtOAc in hexanes) to yield pure hoaimide C (3) (1.3 mg, 16%) as a colorless oil: [α]23D +32 (c 0.6, CHCl3); CD λ 295 nm (Δε −0.35), λ 280 nm (Δε −0.15), λ 260 nm (Δε +0.13), 245 nm (Δε −0.11), λ 220 nm (Δε +3.98); UV (MeCN) λmax 250 nm (log ε 3.84); IR (neat) νmax 3366, 2963, 2927, 1731, 1655, 1516, 1179, 1083, 671 cm−1; 1H NMR (600 MHz, pyridine-d5) δ 8.30 (1H, s, H-20), 7.60 (1H, d, J = 10.1 Hz, NH-4), 7.42 (1H, d, J = 3.6 Hz, OH), 5.95 (1H, s, OH), 5.38 (1H, s, OH), 4.45 (1H, d, J = 9.0 Hz, H-3), 4.43 (1H, ddd, J = 11.4, 3.8, 2.4 Hz, H-23), 4.41 (1H, dd, J = 10.8, 1.5 Hz, H-25), 4.19 (1H, d, J = 11.4 Hz, H-12a), 4.17 (1H, m, H-36a), 4.15 (1H, dd, J = 9.6, 9.6 Hz, H-4), 4.15 (1H, d, J = 11.4 Hz, H-16a), 4.13 (1H, m, H-36b), 3.93 (1H, dd, J = 6.6, 4.9 Hz, H-27), 3.54 (1H, d, J = 10.8 Hz, H-16b), 3.51 (1H, dd, J = 15.6, 1.8 Hz, H-22a), 3.35 (3H, s, H-35), 3.33 (1H, d, J = 11.4 Hz, H-12b), 3.16 (1H, dd, J = 15.0, 10.2 Hz, H-22b), 2.92 (1H, dddd, J = 9.6, 7.2, 7.2, 7.2 Hz, H-2), 2.52 (1H, m, H-24), 2.05 (1H, m, H-26), 2.04 (3H, s, H-17), 2.02 (1H, m, H-5), 1.87 (1H, quintet, J = 6.0 Hz, H-28), 1.78 (1H, m, H-6a), 1.77 (3H, s, H-13), 1.59 (1H, m, H-29a), 1.39 (1H, m, H-6b), 1.38 (2H, m, H-30), 1.37 (1H, m, H-29b), 1.34 (3H, d, J = 7.2 Hz, H-9), 1.20 (3H, d, J = 6.6 Hz, H-33), 1.15 (3H, d, J = 6.0 Hz, H-32), 1.14 (3H, t, J = 7.2 Hz, H-37), 0.97 (3H, d, J = 6.6 Hz, H-8), 0.95 (3H, d, J = 7.2 Hz, H-34), 0.93 (3H, t, J = 7.8 Hz, H-7), 0.89 (3H, t, J = 7.2 Hz, H-31); 13C NMR (125 MHz, pyridine-d5) δ 178.9 (C-14), 176.4 (C-1), 174.8 (C-10), 170.4 (C-21), 163.6 (C-18), 148.4 (C-19), 122.1 (C-20), 85.7 (C-11), 85.0 (C-15), 81.6 (C-23), 76.4 (C-27), 71.62 (C-3), 71.57 (C-25), 60.5 (C-36), 56.8 (C-35), 54.1 (C-4), 45.3 (C-2), 43.0 (C-16), 41.9 (C-12), 37.9 (C-26), 37.3 (C-24), 37.2 (C-29), 36.7 (C-5), 35.5 (C-28), 34.2 (C-22), 27.0 (C-17), 26.4 (C-13), 26.3 (C-6), 20.7 (C-30), 16.0 (C-8), 14.8 (C-31), 14.6 (C-9), 14.5 (C-37), 14.2 (C-32), 11.5 (C-7), 10.41 (C-33), 10.38 (C-34); HR ESIMS m/z [M+H]+ 771.3860 (calcd for C37H63N4O7S3, 771.3859).
Neocortical Neuron Culture
Primary cultures of neocortical neurons were obtained from embryonic day 16 Swiss-Webster mice. Briefly, pregnant mice were euthanized by CO2 asphyxiation, and embryos were removed under sterile conditions. Neocortices were collected, stripped of meninges, minced by trituration with a Pasteur pipette and treated with trypsin for 25 min at 37 °C. The cells were then dissociated by two successive trituration and sedimentation steps in soybean trypsin inhibitor and DNase containing isolation buffer, centrifuged and resuspended in Eagle’s minimal essential medium with Earle’s salt (MEM) and supplemented with 1 mM L-glutamine, 10% fetal bovine serum, 10% horse serum, 100 IU/mL penicillin and 0.10 mg/mL streptomycin, pH 7.4. Cells were plated onto poly-L-lysine-coated 96-well (9 mm) clear-bottomed black-well culture plates (Costar) at a density of 1.5 × 105 cells/well. Cells were then incubated at 37 °C in a 5% CO2 and 95% humidity atmosphere. Cytosine arabinoside (10 μM) was added to the culture medium on day 2 after plating to prevent proliferation of nonneuronal cells. The culture media was changed on days 5 and 7 using a serum-free growth medium containing Neurobasal Medium supplemented with B-27, 100 I.U./mL penicillin, 0.10 mg/mL streptomycin, and 0.2 mM L-glutamine. Neocortical cultures were used in experiments between 8–13 days in vitro (DIV). All animal use protocols were approved by the Institutional Animal Care and Use Committee (IACUC) at Creighton University.
Intracellular Ca2+ Monitoring
Neocortical neurons grown in 96-well plates were used for [Ca2+]i measurements at 12–13 DIV. Briefly, the growth medium was removed and replaced with dye loading buffer (50 μL/well) containing 4 μM fluo-3 and 0.04% pluronic acid F-127 in Locke’s buffer (8.6 mM Hepes, 5.6 mM KCl, 154 mM NaCl, 5.6 mM glucose, 1.0 mM MgCl2, 2.3 mM CaCl2, 0.0001 mM glycine, pH 7.4). After 1 h incubation in dye loading buffer, the neurons were washed four times in fresh Locke’s buffer (200 μL/well) using an automated cell washer (BioTek instrument, Inc., Winooski, VT) and transferred to a FLEXstation™ II (Molecular Devices, Sunnyvale, CA). The final volume of Locke’s buffer in each well was 150 μL. Cells were excited at 485 nm and Ca2+-bound Fluo-3 emission was detected at 535 nm. Fluorescence readings were taken once every 1.5 s for 60 s to establish the baseline and then 50 μL of hoiamide analogue solution (4 ×) were added to each well from the compound plate at the rate of 52 μL/s, yielding a final volume of 200 μL/well.
Intracellular Sodium Concentration ([Na+]i) Measurement
The neocortical neurons cultured in 96-well plates (DIV 8–13) were washed four times with Locke’s solution using an automated cell washer (Bioteck instrument Inc.) The background fluorescence of each well was measured and averaged prior to dye loading. Cells were then incubated for 1 h at 37 °C with dye loading buffer (50 μL/well) containing 10 μM SBFI-AM and 0.02% Pluronic F-127. After 1 h incubation in dye loading medium, cells were washed five times with Locke’s buffer, leaving a final volume of 150 μl in each well. The plate was then transferred to the plate chamber of a FLEXstationTM II (Molecular Devices). Cells were excited at 340 nm and 380 nm and Na+-bound SBFI emission was detected at 505 nm. Fluorescence readings were taken once every 5 s for 60 s to establish the baseline and then 50 μL of hoiamide analogue containing solution (4 ×) were added to each well from the compound plate at a rate of 52 μL/s, yielding a final volume of 200 μL/well.
Data analysis
Time-response and concentration-response graphs were generated using Graphpad Prism software (Graphpad Software Inc., San Diego, CA). The EC50 values were determined by non-linear regression analysis using a logistic equation.
Supplementary Material
Acknowledgments
We thank A. C. Jones and T. L. Simmons for assistance with collection of the different hoiamide-producing cyanobacterial samples from Papua New Guinea, as well as A. Jansma for assistance with the Bruker 600 MHz TCI cryoprobe spectrometer (supported in part by the Skaggs School of Pharmacy and Pharmaceutical Sciences, UCSD). Support of chemical and pharmacological aspects of the work was provided by NIH NS053398. We further acknowledge the NSF CHE-0741968 for support of the JEOL and 13C-sensitive Varian NMR spectrometers in the Department of Chemistry and Biochemistry, UCSD.
Footnotes
Supporting Information Available: LR and HR ESIMS, one-dimensional (1H and 13C) and two-dimensional (COSY, TOCSY, HSQC, HMBC, ROESY, HETLOC and HSQMBC) NMR spectra of 2, 3, 6, and 7, LC ESIMS profile and CD spectra of natural and semi-synthetic 3, and bioassay results of 1 and 2. This material is available free of charge via the Internet at http://pubs.acs.org.
References and Notes
- 1.Tidgewell K, Clark BT, Gerwick WH. In: Comprehensive natural products chemistry. 2. Moore B, Crews P, editors. Elsevier; Oxford, UK: 2010. pp. 141–188. [Google Scholar]
- 2.(a) Fitch CP, Bishop LM, Boyd WL, Gortner RA, Rogers CF, Tilden JE. Cornell Vet. 1934;24:30–39. [Google Scholar]; (b) Walsh P, Fleming L, Solo-Gabriele H, Gerwick WH, editors. Oceans and Human Health, Risks and Remedies from the Sea. Elsevier Press; 2008. p. 760. [Google Scholar]
- 3.Marner FJ, Moore RE, Hirotsu K, Clardy J. J Org Chem. 1977;42:2815–2819. [Google Scholar]
- 4.(a) Gerwick WH, Proteau PJ, Nagle DG, Hamel E, Blokhin A, Slate D. J Org Chem. 1994;59:1243–1245. [Google Scholar]; (b) Blokhin AV, Yoo HD, Geralds RS, Nagle DG, Gerwick WH, Hamel E. Mol Pharmacol. 1995;48:523–531. [PubMed] [Google Scholar]; (c) Marquez BL, Watts KS, Yokochi A, Roberts MA, Verdier-Pinard P, Jimenez JI, Hamel E, Scheuer PJ, Gerwick WH. J Nat Prod. 2002;65:866–871. doi: 10.1021/np0106283. [DOI] [PubMed] [Google Scholar]; (d) Wu M, Okino T, Nogle LM, Marquez BL, Williamson RT, Sitachitta N, Berman FW, Murray TF, McGough K, Jacobs R, Colsen K, Asano T, Yokokawa F, Shioiri T, Gerwick WH. J Am Chem Soc. 2000;122:12041–12042. [Google Scholar]; (e) Orjala J, Nagle DG, Hsu V, Gerwick WH. J Am Chem Soc. 1995;117:8281–8282. [Google Scholar]; (f) Luesch H, Yoshida WY, Moore RE, Paul VJ, Corbett TH. J Am Chem Soc. 2001;123:5418–5423. doi: 10.1021/ja010453j. [DOI] [PubMed] [Google Scholar]; (g) Luesch H, Chanda SK, Raya RM, DeJesus PD, Orth AP, Walker JR, Izpisúa Belmonte JC, Schultz PG. Nat Chem Biol. 2006;2:158–167. doi: 10.1038/nchembio769. [DOI] [PubMed] [Google Scholar]
- 5.Jones AC, Gu L, Sorrels CM, Sherman DH, Gerwick WH. Curr Opin Chem Biol. 2009;13:216–223. doi: 10.1016/j.cbpa.2009.02.019. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 6.Clare JJ, Tate SN, Nobbs M, Romanos MA. Drug Discov Today. 2000;5:506–520. doi: 10.1016/s1359-6446(00)01570-1. [DOI] [PubMed] [Google Scholar]
- 7.(a) Catterall WA, Cestele S, Yarov-Yarovoy V, Yu FH, Konoki K, Scheuer T. Toxicon. 2007;49:124–141. doi: 10.1016/j.toxicon.2006.09.022. [DOI] [PubMed] [Google Scholar]; (b) Denac H, Mevissen M, Scholtysik G. Naunyn-Schmiedebergs Arch Pharmacol. 2000;362:453–479. doi: 10.1007/s002100000319. [DOI] [PubMed] [Google Scholar]; (c) Taylor CP, Meldrum BS. Trends Pharmacol Sci. 1995;16:309–316. doi: 10.1016/s0165-6147(00)89060-4. [DOI] [PubMed] [Google Scholar]; (d) Cestele S, Catterall WA. Biochimie. 2000;82:883–892. doi: 10.1016/s0300-9084(00)01174-3. [DOI] [PubMed] [Google Scholar]
- 8.(a) Pereira A, Cao Z, Murray TF, Gerwick WH. Chem Biol. 2009;16:893–906. doi: 10.1016/j.chembiol.2009.06.012. [DOI] [PMC free article] [PubMed] [Google Scholar]; (b) Pereira A, Cao Z, Murray TF, Gerwick WH. Chem Biol. 2009;16:1208. [Google Scholar]
- 9.Mamer OA. Methods Enzymol. 2000;324:3–10. doi: 10.1016/s0076-6879(00)24213-4. [DOI] [PubMed] [Google Scholar]
- 10.Grindberg RV, Shuman CF, Sorrels CM, Wingerd J, Gerwick WH. In: Modern Alkaloids, Structure, Isolation, Synthesis and Biology. Fattorusso E, Taglialatela-Scafati O, editors. Wiley-VCH Verlang GmbH; Weinheim, Germany: 2008. pp. 139–170. [Google Scholar]
- 11.Namikoshi M, Murakami T, Fujiwara T, Nagai H, Niki T, Harigaya E, Watanabe MF, Oda T, Yamada J, Tsujimura S. Chem Res Toxicol. 2004;17:1692–1696. doi: 10.1021/tx0498152. [DOI] [PubMed] [Google Scholar]
- 12.Ramaswamy AV, Sorrels CM, Gerwick WH. J Nat Prod. 2007;70:1977–1986. doi: 10.1021/np0704250. [DOI] [PubMed] [Google Scholar]
- 13.Dravid SM, Baden DG, Murray TF. J Neurochem. 2004;89:739–749. doi: 10.1111/j.1471-4159.2004.02407.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 14.Dravid SM, Murray TF. Brain Res. 2004;1006:8–17. doi: 10.1016/j.brainres.2004.01.059. [DOI] [PubMed] [Google Scholar]
- 15.Komárek J, Anagnostidis K. In: Süßwasserflora von Mitteleuropa. Büdel B, Gärtner G, Krienitz L, Schagerl M, editors. 19/2. Gustav Fischer; Jena: 2005. pp. 483–606. [Google Scholar]
- 16.Edgar RC. BMC Bioinf. 2004;32:1792–1797. doi: 10.1093/nar/gkh340. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 17.Cannone JJ, Subramanin S, Schnare MN, Collett JR, D’Souza LM, Du Y, Feng B, Lin N, Madabusi LV, Muller KM, Pnde N, Schang Z, Yu N, Gutell RR. BMC Bioinf. 2002;3:1471–2105. doi: 10.1186/1471-2105-3-2. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 18.Posada D, Crandall KA. Bioinformatics. 1998;14:817–818. doi: 10.1093/bioinformatics/14.9.817. [DOI] [PubMed] [Google Scholar]
- 19.Guindon S, Gascuel O. System Biol. 2003;52:696–704. doi: 10.1080/10635150390235520. [DOI] [PubMed] [Google Scholar]
- 20.Ronquist F, Huelsenbeck JP. Bioinformatics. 2003;12:1572–1574. doi: 10.1093/bioinformatics/btg180. [DOI] [PubMed] [Google Scholar]
- 21.Nylander JAA, Wilgenbusch JC, Warren DL, Swofford DL. Bioinformatics. 2008;15:581–583. doi: 10.1093/bioinformatics/btm388. [DOI] [PubMed] [Google Scholar]
- 22.Fujii K, Ikai Y, Oka H, Suzuki M, Harada K. Anal Chem. 1997;69:5146–5151. [Google Scholar]
- 23.Pattenden G, Thom SM, Jones MF. Tetrahedron. 1993;49:2131–2138. [Google Scholar]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.







