Abstract
Complexes of elongation factor Tu (EF-Tu) with guanosine 3'-diphosphate 5'-diphosphate (ppGpp) bind to ribosomes where they slow the incorporation of aminoacyl-tRNAs into protein by inhibiting both the binding of aminoacyl-tRNA.EF-Tu.GTP ternary complexes and the formation of peptide bonds. The latter action increases the time available for aminoacyl-tRNA rejection by the ribosome and, therefore, increases the effectiveness of proofreading. Synthesis of ppGpp and the formation of EF-Tu.ppGpp occur in vivo in response to amino acid starvation. Our finding, therefore, suggests an explanation for the otherwise puzzling observation that amino acid starvation has, at most, a moderate effect on the fidelity of protein synthesis in wild-type Escherichia coli. We suggest that an EF-Tu.ppGpp-induced increase in the effectiveness of proofreading buffers the overall translational fidelity of these cells against amino acid starvation-induced errors in initial selection of aminoacyl-tRNA ternary complexes.
Full text
PDF




Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Böck A., Faiman L. E., Neidhardt F. C. Biochemical and genetic characterization of a mutant of Escherichia coli with a temperature-sensitive valyl ribonucleic acid synthetase. J Bacteriol. 1966 Oct;92(4):1076–1082. doi: 10.1128/jb.92.4.1076-1082.1966. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Dix D. B., Thompson R. C., Mackow E. R., Chang F. N. Effect of ppGpp on the accuracy of protein biosynthesis. Arch Biochem Biophys. 1983 May;223(1):319–324. doi: 10.1016/0003-9861(83)90597-0. [DOI] [PubMed] [Google Scholar]
- Eccleston J. F., Messerschmidt R. G., Yates D. W. A simple rapid mixing device. Anal Biochem. 1980 Jul 15;106(1):73–77. doi: 10.1016/0003-2697(80)90120-7. [DOI] [PubMed] [Google Scholar]
- Edelmann P., Gallant J. Mistranslation in E. coli. Cell. 1977 Jan;10(1):131–137. doi: 10.1016/0092-8674(77)90147-7. [DOI] [PubMed] [Google Scholar]
- Fersht A. R. Enzymic editing mechanisms and the genetic code. Proc R Soc Lond B Biol Sci. 1981 Aug 19;212(1189):351–379. doi: 10.1098/rspb.1981.0044. [DOI] [PubMed] [Google Scholar]
- Gallant J., Harada B. The control of ribonucleic acid synthesis in Escherichia coli. 3. The functional relationship between purine ribonucleoside triphosphate pool sizes and the rate of ribonucleic acid accumulation. J Biol Chem. 1969 Jun 25;244(12):3125–3132. [PubMed] [Google Scholar]
- Haseltine W. A., Block R., Gilbert W., Weber K. MSI and MSII made on ribosome in idling step of protein synthesis. Nature. 1972 Aug 18;238(5364):381–384. doi: 10.1038/238381a0. [DOI] [PubMed] [Google Scholar]
- Leberman R., Antonsson B., Giovanelli R., Guariguata R., Schumann R., Wittinghofer A. A simplified procedure for the isolation of bacterial polypeptide elongation factor EF-Tu. Anal Biochem. 1980 May 1;104(1):29–36. doi: 10.1016/0003-2697(80)90272-9. [DOI] [PubMed] [Google Scholar]
- Lucas-Lenard J., Tao P., Haenni A. L. Further studies on bacterial polypeptide elongation. Cold Spring Harb Symp Quant Biol. 1969;34:455–462. doi: 10.1101/sqb.1969.034.01.051. [DOI] [PubMed] [Google Scholar]
- Miller D. L., Weissbach H. Elongation factor Tu and the aminoacyl-tRNA-EFTu-GTP complex. Methods Enzymol. 1974;30:219–232. doi: 10.1016/0076-6879(74)30024-9. [DOI] [PubMed] [Google Scholar]
- O'Farrell P. H. The suppression of defective translation by ppGpp and its role in the stringent response. Cell. 1978 Jul;14(3):545–557. doi: 10.1016/0092-8674(78)90241-6. [DOI] [PubMed] [Google Scholar]
- Parker J., Holtz G. Control of basal-level codon misreading in Escherichia coli. Biochem Biophys Res Commun. 1984 Jun 15;121(2):487–492. doi: 10.1016/0006-291x(84)90208-0. [DOI] [PubMed] [Google Scholar]
- Parker J., Johnston T. C., Borgia P. T. Mistranslation in cells infected with the bacteriophage MS2: direct evidence of Lys for Asn substitution. Mol Gen Genet. 1980;180(2):275–281. doi: 10.1007/BF00425839. [DOI] [PubMed] [Google Scholar]
- Rojas A. M., Ehrenberg M., Andersson S. G., Kurland C. G. ppGpp inhibition of elongation factors Tu, G and Ts during polypeptide synthesis. Mol Gen Genet. 1984;197(1):36–45. doi: 10.1007/BF00327920. [DOI] [PubMed] [Google Scholar]
- Ruusala T., Andersson D., Ehrenberg M., Kurland C. G. Hyper-accurate ribosomes inhibit growth. EMBO J. 1984 Nov;3(11):2575–2580. doi: 10.1002/j.1460-2075.1984.tb02176.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Skoultchi A., Ono Y., Waterson J., Lengyel P. Peptide chain elongation. Cold Spring Harb Symp Quant Biol. 1969;34:437–454. doi: 10.1101/sqb.1969.034.01.050. [DOI] [PubMed] [Google Scholar]
- Thomposon R. C., Dix D. B. Accuracy of protein biosynthesis. A kinetic study of the reaction of poly(U)-programmed ribosomes with a leucyl-tRNA2-elongation factor Tu-GTP complex. J Biol Chem. 1982 Jun 25;257(12):6677–6682. [PubMed] [Google Scholar]
- Thompson R. C., Dix D. B., Eccleston J. F. Single turnover kinetic studies of guanosine triphosphate hydrolysis and peptide formation in the elongation factor Tu-dependent binding of aminoacyl-tRNA to Escherichia coli ribosomes. J Biol Chem. 1980 Dec 10;255(23):11088–11090. [PubMed] [Google Scholar]
- Thompson R. C., Karim A. M. The accuracy of protein biosynthesis is limited by its speed: high fidelity selection by ribosomes of aminoacyl-tRNA ternary complexes containing GTP[gamma S]. Proc Natl Acad Sci U S A. 1982 Aug;79(16):4922–4926. doi: 10.1073/pnas.79.16.4922. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Van Noort J. M., Kraal B., Bosch L. A second tRNA binding site on elongation factor Tu is induced while the factor is bound to the ribosome. Proc Natl Acad Sci U S A. 1985 May;82(10):3212–3216. doi: 10.1073/pnas.82.10.3212. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wagner E. G., Ehrenberg M., Kurland C. G. Kinetic suppression of translational errors by (p)ppGpp. Mol Gen Genet. 1982;185(2):269–274. doi: 10.1007/BF00330797. [DOI] [PubMed] [Google Scholar]
- Wagner E. G., Kurland C. G. Translational accuracy enhanced in vitro by (p)ppGpp. Mol Gen Genet. 1980;180(1):139–145. doi: 10.1007/BF00267363. [DOI] [PubMed] [Google Scholar]
- Yegian C. D., Stent G. S. An unusual condition of leucine transfer RNA appearing during leucine starvation of Escherichia coli. J Mol Biol. 1969 Jan 14;39(1):45–58. doi: 10.1016/0022-2836(69)90332-5. [DOI] [PubMed] [Google Scholar]