Abstract
The capacity of adult mammals to regenerate sensory hair cells is not well defined. To explore early steps in this process, we examined reactivation of a transiently expressed developmental gene, Atoh1, in adult mouse utricles after neomycin-induced hair cell death in culture. Using an adenoviral reporter for Atoh1 enhancer, we found that Atoh1 transcription is activated in some hair cell progenitors (supporting cells) 3 d after neomycin treatment. By 18 d after neomycin, the number of cells with Atoh1 transcriptional activity increased significantly, but few cells acquired hair cell features (i.e., accumulated ATOH1 or myosin VIIa protein or developed stereocilia). Treatment with DAPT, an inhibitor of γ-secretase, reduced notch pathway activity, enhanced Atoh1 transcriptional activity, and dramatically increased the number of Atoh1-expressing cells with hair cell features, but only in the striolar/juxtastriolar region. Similar effects were seen with TAPI-1, an inhibitor of another enzyme required for notch activity (TACE). Division of supporting cells was rare in any control or DAPT-treated utricles. This study shows that mature mammals have a natural capacity to initiate vestibular hair cell regeneration and suggests that regional notch activity is a significant inhibitor of direct transdifferentiation of supporting cells into hair cells following damage.
Introduction
Hair cells in the vestibular portion of the inner ear are essential for body orientation and balance. They are vulnerable to ototoxic drugs, infection, and disease, and their loss causes balance impairments. In mammals, hair cells are produced during a finite developmental period (Ruben, 1967). Mature mammals seem to be able to replace hair cells in utricles (otolithic vestibular organs) in some conditions (Forge et al., 1993, 1998; Warchol et al., 1993; Kuntz and Oesterle, 1998; Kawamoto et al., 2009) but not in others (Rubel et al., 1995). It is unclear whether hair cells are restored by cellular regeneration or repair, since most damage methods do not kill all original hair cells and only rare replacement hair cells appear to be formed by cell division.
The basic helix-loop-helix (bHLH) transcription factor, atonal homolog 1 or ATOH1, is transiently expressed in embryonic hair cells and is required for their differentiation (Bermingham et al., 1999; Shailam et al., 1999; Chen et al., 2002; Woods et al., 2004). In chickens and zebrafish, which spontaneously regenerate hair cells (for review, see Brignull et al., 2009), Atoh1 is reactivated in hair cell progenitors (supporting cells) and temporally accumulates in young regenerated hair cells (Cafaro et al., 2007; Ma et al., 2008). In adult mouse utricles, ATOH1-immunoreactive cells appear shortly after injury (Wang et al., 2010). Forced overexpression of Atoh1 in mammalian supporting cells (Zheng and Gao, 2000; Kawamoto et al., 2003; Shou et al., 2003; Woods et al., 2004; Staecker et al., 2007; Gubbels et al., 2008) or other nonsensory cells (Huang et al., 2009) promotes their direct conversion into hair cells without cell division. Therefore, it remains unclear why spontaneous Atoh1 reactivation after damage does not trigger more reliable and substantial hair cell replacement in mammals.
In the developing inner ear, Atoh1 transcription is repressed by activation of the receptor, notch (Lanford et al., 2000; Zheng and Gao, 2000; for review, see Lewis, 1998; Kageyama et al., 2005). Ligand-binding triggers extracellular cleavage of notch by tumor necrosis factor α converting enzyme (TACE) and intracellular cleavage by γ-secretase (Kopan and Ilagan, 2009). The notch intracellular domain enters the nucleus and interacts with CSL (CBF-1/SuH/Lag-1) transcription factors. This interaction drives the transcription of genes encoding the bHLH transcriptional repressors, HES/HER/E(SPL), whose targets include Atoh1. During inner ear development, notch activity promotes sensory specification and then limits organ size and hair cell numbers via lateral inhibition (for review, see Kelley, 2006). In nonmammalian vertebrates, notch signaling antagonizes hair cell regeneration (Ma et al., 2008; Daudet et al., 2009; Slattery and Warchol, 2010). However, in mature mammals, notch inactivation does not promote hair cell regeneration in the organ of Corti (Hori et al., 2007), and a role for notch in modulating vestibular hair cell regeneration is unexplored.
Using organotypic cultures of adult mouse utricles, we show that supporting cells upregulate Atoh1 transcriptional activity shortly after hair cell damage, but only rare cells acquire advanced hair cell features. Blocking notch activity with inhibitors of γ-secretase or TACE accelerates regional hair cell regeneration by promoting supporting cells to convert into new hair cells without dividing.
Materials and Methods
Animals.
Six- to 9-week-old (adult) Swiss Webster mice were obtained from Charles River Laboratories or Harlan Laboratories and maintained by the Department of Comparative Medicine, with ad libitum access to food and water. Male and female mice were used for experiments. Mice were killed via cervical dislocation followed by decapitation. All experiments and specific procedures were approved by the University of Washington Institutional Animal Care and Use and Biosafety Committees and adhered to NIH-approved standards.
Organotypic cultures.
Whole utricles were dissected from 6- to 9 week-old mice and cultured free-floating, as described previously (Yamashita and Oesterle, 1995; Cunningham et al., 2002). Otoconia were removed using a gentle stream of PBS ejected from a 25 G needle and syringe. Utricles were cultured in 500 μl of media in untreated 24-well flat-bottom plates or 100 μl of media in untreated 96-well flat-bottom plates (BD Falcon). All cultures were maintained at 37°C in 5% CO2/95% air. Half volumes of media were supplemented with fresh media daily.
Culture media consisted of DMEM (Invitrogen), 1% fetal bovine serum (Atlanta Biologicals), and 0.5% dimethyl sulfoxide (DMSO; Sigma-Aldrich) as a negative control for experiments in which DAPT and TAPI-1 were included in media (see below). Neomycin sulfate stock (10 mg/ml in 0.9% NaCl, from Sigma-Aldrich) was diluted in culture media to 4 mm. γ-Secretase inhibitor IX, also called DAPT (N-[N-(3,5-difluorophenacetyl)-l-alanyl]-S-phenylglycine t-butyl ester; catalog number 565784), was purchased from EMD Chemicals, diluted with 100% DMSO to a stock concentration of 10 mm, and used at working concentrations of 10 or 50 μm. The TACE inhibitor TAPI-1 (catalog number 579051, EMD Chemicals) was diluted with 100% DMSO to a stock concentration of 10 mm. Stock solution was diluted in culture media to a working concentration of 50 μm. In experiments using DAPT or TAPI-1, matching concentrations of DMSO (0.1% or 0.5%) were used as vehicle controls, and control and experimental groups were cultured simultaneously. Bromodeoxyuridine (BrdU, Sigma-Aldrich) was included at 1 μm.
Adenovirus transduction.
Adenovirus serotype 5 driving green fluorescence protein (GFP) under control of the cytomegalovirus (CMV) promoter (Ad5-CMV-GFP) was obtained from Vector BioLabs. The optimal viral concentration, which caused moderate transduction and minimal cellular damage relative to other concentrations, was selected after culturing utricles as follows with varying dilutions of the virus (107–109 transduction units). One or two freshly explanted utricles were placed in a well from a 96-well plate containing 30–50 μl of viral solution and incubated overnight at 37°C on a slow rotator. After rinsing and culturing for 1 additional day in virus-free media, utricles were fixed with phosphate-buffered 4% paraformaldehyde (Sigma-Aldrich) for 30 min. We used confocal microscopy to compare the following features across the cultures: (1) relative efficiency of transduction in the utricular sensory epithelium (SE); (2) hair cell morphology, as assessed using myosin VIIa labeling; and (3) health of hair cell and supporting cell nuclei, as assessed using DAPI (4′,6′-diamidino-2-phenylindole) labeling (see below for details). The concentration we found to be optimal—1.2 × 108 transduction units per milliliter of media (2 parts Basal Medium Eagle media and 1 part Earle's balanced salt solution)—was used for all experiments reported here.
Ad5-Atoh1-GFP was engineered to drive GFP transcription under control of the mouse Atoh1 3′ enhancer. A 1391 nt Xho1-Sal1 DNA fragment of J2XnGFP (Jane Johnson, University of Texas Southwestern Medical School, Dallas, TX) (Helms et al., 2000) containing two copies of the Atoh1 enhancer, GFP, β-globin promoter, a nuclear localization signal sequence, and the bovine-growth hormone polyadenylation signal, was cloned into the Xho1 site of pShuttle plasmid (Stratagene/Agilent Technologies) (Timmer et al., 2001). This construct, pShuttle-Atoh1-GFP, was recombined with pAdE-(delta)pol using a modified AdEasy system (Luo et al., 2007) using C7 &HEK 293 (Amalfitano and Chamberlain, 1997; Wise et al., 2010) to generate replication-incompetent serotype 5 adenovirus (Ad5-Atoh1-GFP). Virus was amplified through several rounds and purified using ion exchange chromatography membranes (Vivascience, Sartorius). Viral concentrations were estimated by spectrophotometry (OD260) and transduction of cultured cell lines (HT 1080) to verify GFP expression. Biological titers were 10–50% of spectrophotometric titers. The optimal dose for Ad5-Atoh1-GFP was 4 × 108 optical particle units in 30–50 μl of media. Transduction parameters were identical to those used with Ad5-CMV-GFP (except for dose).
Viral stocks were stored at −80°C. For all experiments, viral treatment was performed overnight on freshly explanted utricles, before neomycin treatment, and cultures were generously rinsed with media after viral treatment.
Analysis of notch target gene expression.
Quantitative real-time PCR (qRTPCR) was used to examine expression of notch pathway genes. Three conditions were examined: (1) adult mouse utricles cultured with 0.5% DMSO for 4 d, including an initial 1 d neomycin treatment; (2) adult mouse utricles cultured with 50 μm DAPT for 4 d, including an initial 1 d neomycin treatment; and (3) postnatal day 1 mouse brain. For conditions 1 and 2, a total of five PCR runs were performed (10–18 utricles per run). For condition 3, portions from one telencephalon were used for one PCR run.
Whole utricles were harvested, placed in RNeasy R1 Buffer (Qiagen), triturated, and stored at −80°C. The RNeasy Micro kit (Qiagen) was used to isolate RNA, and first-strand cDNA was generated using PowerScript Reverse Transcriptase (Clontech), diluted 1:20 in 10 mm Tris-HCl/0.1 mm EDTA, pH 8.0. Approximately 60 ng of cDNA for each condition were processed using an iCycler (Bio-Rad). Primers for β-actin, Notch1-4, Jag2, Dll1, Hes1, Hes5, Hey1, and Hey3 were ordered from Eurofin MWG Operon; sequences are available upon request. Two duplicate wells were processed per primer set for each run. Threshold cycle (Ct) was set at 100 relative fluorescent units. Relative gene expression levels are described as 2−dCt, where dCt equals the difference in Ct between the target gene and β-actin. To estimate fold differences in transcript levels between conditions 1 and 2, the 2−ddCt method was used (Pfaffl, 2001).
Histological labeling.
All procedures were conducted at room temperature, unless otherwise stated. Whole-mount utricles were fixed for 1 h with phosphate-buffered 4% paraformaldehyde. Utricles were permeabilized with 0.05–0.2% Triton X-100 (Sigma-Aldrich) in PBS for 1–2 h. Utricles undergoing BrdU immunolabeling were incubated in 2N HCl for 30 min to denature DNA. All utricles were incubated in blocking solution [10% normal horse serum or normal goat serum (Vector Laboratories) in 0.05% Triton X-100] for 30 min before primary antibody incubation. All antibodies were diluted in this blocking solution.
Certain utricles were incubated with rabbit anti-ATOH1 antibodies (1:300) (from Jane Johnson, University of Texas Southwestern Medical Center; Helms and Johnson, 1998; Helms et al., 2000; Chen et al., 2002; Cafaro et al., 2007) for two nights at 4°C followed by 4 h at room temperature. After rinsing with PBS, utricles were incubated in goat anti-rabbit horseradish peroxidase-conjugated secondary antibodies (1:400, Invitrogen) overnight at 4°C followed by 4 h at room temperature. The Tyramide Signal Amplification Alexa 488 kit (Invitrogen) was applied according to the manufacturer's instructions. Hair cells were labeled by applying guinea pig anti-myosin VIIa antibodies (from Stefan Heller, Stanford University) overnight at 4°C followed by incubation with goat anti-guinea pig IgG conjugated to Alexa594 (Invitrogen) for 2 h. For BrdU labeling, utricles were incubated in mouse anti-BrdU antibody (1:300, Becton Dickinson) followed by donkey anti-mouse IgG conjugated to Alexa594. Following immunolabeling, utricles were whole-mounted in Vectashield (Vector Laboratories) or Fluoromount (Southern Biotech).
Additional hair cell labeling was performed by blocking utricles with 2% bovine serum albumin, 0.8% normal goat serum, and 0.4% Triton X-100 for 4 h. Rabbit anti-myosin VIIa antibodies (Proteus Biosciences) were applied overnight at 4°C followed by incubation with goat anti-rabbit IgG conjugated to Alexa594 (Invitrogen) for 4 h. This method resulted in equivalent labeling compared to guinea pig anti-myosin VIIa antibodies described above. Additional primary antibodies were used: anti-calbindin (AB1778, Millipore Bioscience Research Reagents), anti-calmodulin (C3545, Sigma-Aldrich), rabbit anti-GFP (Invitrogen), and anti-Jag1, Santa Cruz Biotechnology).
All secondary antibodies were purchased from Invitrogen. Some utricles were counterstained with nuclear dye (DAPI, 1 μg/ml for 10 min, Sigma-Aldrich) to help with orientation during confocal imaging. Additional utricles were counterstained with phalloidin (Invitrogen) at 10 μg/ml to label filamentous actin, which binds filamentous actin, an abundant protein in mature and immature stereocilia.
Microscopy and quantitative analysis.
Fluorescent imaging was performed using an Olympus FV-1000 confocal microscope. We generated single z-series stacks of images for each entire utricle that extended from the lumenal surface past the basement membrane and into the stroma. All cell counts were performed off-line with ImageJ.
In utricles that were cultured, images of the entire utricular SE were generated using a 20× objective. We counted every cell in the SE that had the following labeling pattern: myosin VIIa-positive (+), ATOH1+/myosin VIIa+, GFP+, GFP+/myosin VIIa+ (Figs. 1, 3, 4, Table 1), or BrdU+. Only utricles with fully intact SE were analyzed. To avoid counting fragments of injured hair cells, only cells that possessed detectable, healthy-appearing nuclei were included in counts.
Table 1.
Treatment | Mean number of GFP+ cells per SE (±SD) | Number of GFP+/Myo+ cells per SE (±SD) | %GFP+ cells that were Myo+ |
---|---|---|---|
Control (not cultured) | 0 | 0 | N/A |
DMSO | |||
4 d, no Neo (n = 4) | 24.8 (±22.4) | 0.5 (±0.6) | 2.0 |
3 d post-Neo (n = 9) | 31.0 (±22.9) | 1.7 (±1.9) | 5.5 |
6 d post-Neo (n = 9) | 67.7 (±49.4) | 0.2 (±0.4) | 0.3 |
10 d post-Neo (n = 4) | 125.3 (±57.1) | 1.3 (±1.3) | 1.0 |
18 d post-Neo (n = 6) | 183.0 (±92.8) | 6.2 (±3.6) | 3.4 |
DAPT | |||
4 d, no Neo (n = 4) | 34.8 (±12.6) | 7.5 (±3.0) | 21.6 |
3 d post-Neo (n = 7) | 28.1 (±40.7) | 2.3 (±1.8) | 8.2 |
6 d post-Neo (n = 9) | 148.3 (±141.4) | 4.1 (±5.1) | 2.8 |
10 d post-Neo (n = 10) | 137.9 (±81.9) | 17.1 (±23.7) | 12.4 |
18 d post-Neo (n = 7) | 375.9 (±171.2) | 181.7 (±129.3) | 48.3 |
n, Number of utricles.
To estimate numbers of myosin VIIa+ cells (hair cells) in control, noncultured utricles (Fig. 1), images of the entire utricular SE were generated using a 20× objective. We randomly sampled fifteen 1980 μm2 regions in the SE from each of these images as follows. A 12 × 12 grid was overlaid on the utricle image, and a random number generator was used to create a list of X/Y coordinates, ranging from 1 to 12. Corresponding regions on the grid that fell wholly within the SE were included. The process continued until 15 regions were counted, which constituted 21% of the SE. Counts were summed across areas and averaged across utricles. Averages were multiplied by a factor of 4.76 (100%/21%) to obtain the estimated number of hair cells per utricle.
Adenoviral transduction efficiencies were measured by counting GFP+ cells in images of 14 randomly selected 11,125 μm2 regions (at 60×) from six utricles that were cultured for 1–2 d after transduction.
All qualitative conclusions are based on 4–12 utricles studied in each experimental manipulation discussed. For all quantitative comparisons of histological preparations, the numbers of utricles assessed are provided in the Results section, Table 1, or the figure legends. All statistical analyses were performed using ANOVA, with Fisher PLSD (protected least significant difference) post hoc tests for effects of treatment or time in culture (Statview 4.5, Abacus Concepts). One-way analyses were also performed to assess effects of time on each measurement within a treatment group. Effects were considered statistically significant if p ≤ 0.05.
Results
One-day neomycin treatments cause extensive, but incomplete, hair cell loss in adult utricles
The goal of this study was to determine the degree to which new hair cells are formed in drug-damaged adult mouse utricles and to test whether manipulation of notch signaling can enhance this process. Aminoglycoside antibiotics are ototoxins that kill hair cells. Complete hair cell loss in adult mouse vestibular epithelia is difficult to achieve, since aminoglycosides cause systemic toxicity that reaches lethal levels before maximum damage occurs (e.g., Oesterle et al., 2008; Taylor et al., 2008). Larger lesions require surgical drug delivery (e.g., Kawamoto et al., 2009). Therefore, we induced hair cell loss in organotypic cultures using the aminoglycoside antibiotic neomycin (Yamashita and Oesterle, 1995; Cunningham et al., 2002). Hair cells were examined in control utricles (explanted and fixed immediately) and in utricles at different times after neomycin treatment using immunolabeling for markers specific to hair cells in mice, myosin VIIa or calmodulin (Hasson et al., 1997; Cunningham et al., 2002).
Control utricles that were explanted and fixed without culturing (Fig. 1A,I) had an average of 3472 (±231 SD) myosin VIIa+ cells. These numbers were similar to hair cell numbers reported for adult mice in previous studies (e.g., Kirkegaard and Nyengaard, 2005). Utricles cultured for 1 d without neomycin (Fig. 1B,I) showed considerable hair cell loss; counts of myosin VIIa+ hair cells were 44% of controls. Utricles cultured for 4 d without neomycin exhibited further loss, to 34% of controls, but this difference was not statistically significant (p = 0.745) (Fig. 1I). This spontaneous hair cell loss was likely due to damage from culture conditions. Treatment with high-dose, 4 mm neomycin for 1 d accelerated hair cell loss (Fig. 1C,D,I) such that numbers reached 12% of controls by 4 d in vitro. Qualitatively similar results were seen in cultures that were labeled with antibodies to calmodulin (Fig. 1E–H).
To examine spatial patterns of hair cell loss, utricles were immunolabeled for calbindin, whose expression is limited to hair cells and afferent nerve calyces in the striola in mice (Cunningham et al., 2002). The striola is a “reverse C-shaped” region of the SE, within which hair cell stereociliary bundles undergo a 180° shift in planar polarity and additional specializations exist (e.g., Desai et al., 2005; Li et al., 2008). The specificity of anti-calbindin antibodies for the striola was lost by 4 d in neomycin-treated utricles (Fig. 1E–H). Calbindin became detectable in surviving hair cells throughout the utricle, making it impossible to discern the position of the striola in older cultures. Nonetheless, it was clear that extensive hair cell loss occurred throughout the utricle, in both striolar and extrastriolar regions.
New hair cell differentiation is initiated in adult mouse utricles after damage
We examined whether new hair cell production is triggered in adult mouse utricles after neomycin treatment in vitro. Since Atoh1 transcription is negligible in the mature utricular SE (Shailam et al., 1999) but is required during hair cell development (Bermingham et al., 1999), we reasoned that the reactivation of Atoh1 in supporting cells after damage might reflect their initial transdifferentiation into hair cells.
The Atoh1-GFP transgenic mouse encodes GFP under control of the 3′ Atoh1 enhancer in a manner that reports Atoh1 transcription (Lumpkin et al., 2003). This mouse has been valuable in dissecting early steps in normal hair cell development (Chen et al., 2002), but it was not useful for our studies because GFP fluorescence is retained in the adult utricular SE despite low Atoh1 expression levels. To detect the upregulation of Atoh1 transcription, we generated a serotype 5 adenovirus (Ad5) encoding GFP in the same configuration as the Atoh1-GFP reporter mouse, which we named Ad5-Atoh1-GFP. This vector preferentially infects supporting cells in cultured adult mouse utricles (see below), allowing us to specifically examine Atoh1 reactivation in supporting cells.
First, we tested the efficiency and specificity of Ad5 transduction using a version of the virus that drives GFP expression via the CMV promoter (Ad5-CMV-GFP). Utricles were explanted, treated overnight with virus (in neomycin-free media), rinsed, and maintained in neomycin-free media for 1 or 2 more days. Media included 0.5% DMSO, a solvent used in later experiments. Utricles were labeled to detect myosin VIIa and the nuclear marker, DAPI. Strong GFP fluorescence was seen throughout the SE (Fig. 2A,A′). The distribution of GFP in utricles was variable, but in a given utricle, cells in striolar and extrastriolar regions were consistently GFP+. Quantitative analysis showed that, on average, 27% (±13%) of SE cells were GFP+. All GFP+ cells were myosin VIIa− (negative), stretched from the basal lamina to the lumen, and had nuclei located in the basal compartment of the SE, correlating with the supporting cell layer (Fig. 2B–C′). These observations demonstrate that Ad5 preferentially transduces supporting cells in adult mouse utricles. This finding is consistent with another study in postnatal rat (Huang et al., 2009). However, it differs from adenoviral transduction specificity in cultured embryonic and neonatal mouse utricles, where the virus transduces primarily hair cells (e.g., Holt et al., 1999; J. S. Stone, unpublished observations).
Next, we examined GFP in utricles transduced with Ad5-Atoh1-GFP. Utricles were explanted and cultured overnight with virus. After rinsing, cultures were treated for 1 d with neomycin, rinsed, and maintained for different periods in media lacking neomycin but containing DMSO. For all experiments, utricles were labeled with antibodies to GFP to enhance visualization. At 3 d after neomycin, 31.0 GFP+ cells (±22.9) were present in the SE (Fig. 3A,F,F′, Table 1). Between 3 and 10 d after neomycin, numbers of GFP+ cells increased fourfold (Fig. 3A–C, Table 1; p = 0.020). Although numbers of GFP+ cells appeared to increase between 10 and 18 d (Fig. 3C,D, Table 1), this change was not statistically significant (p = 0.162). These numbers represent underestimates of the actual numbers of supporting cells with Atoh1 transcriptional activity, since only 27% of supporting cells were transduced with the reporter virus. At all times, GFP+ cells were distributed throughout the SE (Fig. 3G,H), suggesting that supporting cells in both extrastriolar and striolar regions reactivated Atoh1 after damage.
To further address Atoh1 reactivation, we labeled additional utricles with antibodies to ATOH1. Utricles from adult mice that were dissected and fixed immediately had no ATOH1+ nuclei in the SE (data not shown). Rare ATOH1+ nuclei (3–6 per SE) were detected in the SE in utricles cultured with neomycin for 1 d and maintained without neomycin for 2, 4, or 6 additional days (Fig. 3E,J; 6 d after neomycin is shown). These results suggest that, although many cells showed increased Atoh1 transcriptional activity, most of those cells may not have generated sufficient ATOH1 protein to be detected by immunolabeling, at least during the time points we examined.
Few cells with Atoh1 transcriptional activity develop hair cell features
To determine whether supporting cells with increased Atoh1 activity transdifferentiate into hair cells, we examined whether GFP+ cells in cultures transduced with Ad5-Atoh1-GFP became immunoreactive for myosin VIIa and formed stereociliary bundles. At 3 d after neomycin, occasional GFP+ cells (1.7 ± 1.9 cells per SE) were also myosin VIIa+ (Fig. 3I,I′, Table 1). There was no significant change in GFP+/myosin VIIa+ cells between 3 and 10 d after neomycin. GFP+/myosin VIIa+ cells increased fivefold between 10 and 18 d (p = 0.001), but overall numbers remained very low. Most GFP+/myosin VIIa+ cells had very high levels of GFP immunofluorescence and were located in the hair cell nuclear layer (Fig. 3I,I′). In contrast, GFP+ cells lacking myosin VIIa labeling usually had low or moderate levels of GFP immunofluorescence and were located in the supporting cell nuclear layer (Fig. 3F,F′). Further, cells that were GFP+/myosin VIIa+ were confined to the presumed striolar/juxtastriolar region (Fig. 3H) and were never seen in presumed extrastriolar regions (Fig. 3G).
Using phalloidin labeling, we could not identify stereocilia on any GFP+/myosin VIIa+ cells in early cultures (3–10 d after neomycin). But, at 18 d after neomycin, 20% of GFP+/myosin VIIa+ cells (∼1 GFP+ cell per SE) had a short, phalloidin-positive structure resembling an immature stereociliary bundle on their apical surface (n = 5 utricles; data not shown, but see Fig. 5).
Since Ad5-Atoh1-GFP transduces supporting cells and not hair cells, these findings demonstrate that rare supporting cells (or existing undifferentiated hair cell precursors) in the striolar/juxtastriolar region were able to transdifferentiate into new hair cells by 2.5 weeks after neomycin treatment. We could not determine whether hair cell differentiation would continue or increase if more time were provided, because cells in the SE degenerated after longer culture periods (until 25 d after neomycin) (data not shown).
New hair cell differentiation is promoted by inhibition of γ-secretase
Notch signaling inhibits hair cell differentiation during embryogenesis (for review, see Kelley, 2006) and modulates hair cell regeneration in nonmammalian vertebrates (Ma et al., 2008; Daudet et al., 2009). γ-Secretase is a potent activator of the canonical notch pathway, since it cleaves the notch receptor and releases its intracellular signal-transducing domain from the plasma membrane (for review, see Kopan and Ilagan, 2009). Inhibitors of γ-secretase such as DAPT mimic notch mutations in Drosophila (Micchelli et al., 2002).
To begin to address whether notch activity blocks hair cell regeneration in the adult mouse utricle, we added 50 μm DAPT to neomycin-treated cultures and looked for evidence of increased rates of renewed hair cell differentiation. Utricles were cultured overnight with Ad5-Atoh1-GFP, treated with neomycin for 1 d, and maintained for 3, 6, 10, or 18 d with DAPT present. GFP+ cells were seen in the SE at all times, and numbers of GFP+ cells increased significantly between 3 and 18 d (Fig. 3K–N, Table 1). Overall, DAPT treatment resulted in higher numbers of GFP+ cells per SE than in DMSO controls (p = 0.001; Fig. 4A). The highest difference between DMSO and DAPT was seen at 18 d, when 375.9 supporting cells were GFP+ in DAPT-treated utricles, which was twofold more than in DMSO controls. In DAPT-treated cultures, moderately GFP+ cells were seen in presumed striolar and extrastriolar regions, similar to the DMSO-treated cultures.
DAPT treatment caused a dramatic increase in the number of cells that were highly GFP+ and the number of cells that were GFP+/myosin VIIa+ compared to DMSO controls (p < 0.001) (Figs. 3K–N, 4B,C, Table 1). At 18 d, DAPT-treated cultures had nearly 30-fold more GFP+/myosin VIIa+ cells than DMSO controls. Further, ∼50% of the GFP+/myosin VIIa+ cells had distinct bundles of stereocilia (e.g., Fig. 5; n = 6 utricles), a higher proportion than seen in DMSO controls at this time (∼20%). Similar to DMSO-treated cultures, the cells that were highly GFP+ and myosin VIIa+ were most pronounced in what appeared to be the striolar/juxtastriolar region (Fig. 3K–N), based on the position and reverse C-shaped pattern of GFP labeling.
Pro-regenerative effects of DAPT were also seen at a lower DAPT concentration. Utricles (n = 4) treated with 10 μm DAPT for 6 d had 153.3 (±54.3) GFP+ cells while utricles cultured with DMSO had 67.7 (±49.4; n = 9 utricles). This difference was statistically significant (p = 0.017). Further, utricles cultured with 10 μm DAPT had significantly more GFP+/myosin VIIa+ cells (9.5 ± 11.1) compared to utricles cultured with DMSO (0.2 ± 0.4) (p = 0.003).
We also examined changes in ATOH1 protein in response to γ-secretase inhibition. Utricles were cultured with neomycin for 1 d followed by 2, 4, or 6 d with 50 μm DAPT (Fig. 3O). DAPT treatment caused significantly higher numbers of cells with nuclear ATOH1 compared to DMSO (p = 0.045; Fig. 3, compare O with E; Fig. 4D). Further, at 4 and 6 d after neomycin, the distribution of ATOH1+ cells was reverse C-shaped, similar to Atoh1-GFP in DAPT-treated cultures at 6–18 d. These observations helped to validate Ad5-Atoh1-GFP as an accurate reporter for Atoh1 transcriptional activity. The number of ATOH1+ cells that were myosin VIIa+ also showed a significant increase between 2 and 6 d (p = 0.020) in DAPT-treated utricles, in contrast to the decline seen in DMSO controls during this period (p = 0.010) (Fig. 4E).
These findings demonstrate that γ-secretase inhibitors induced more supporting cells to activate Atoh1 transcription and pushed more supporting cells to progress to advanced stages of hair cell differentiation after in vitro neomycin treatment than occurs in DMSO controls.
Hair cell regeneration is initiated cultures without neomycin treatment
As shown in Figure 1, utricles cultured without neomycin showed spontaneous loss of hair cells, although numbers were reduced compared to neomycin-treated utricles. To determine whether this degree of loss was sufficient to trigger hair cell regeneration, utricles were cultured overnight with Ad5-Atoh1-GFP followed by 4 d in media containing 0.5% DMSO or 50 μm DAPT but no neomycin. In DMSO-treated cultures, there were 24.8 (±22.4) GFP+ cells in the SE, and in DAPT-treated cultures, there were 34.8 (±12.6) (Table 1). There was no statistically significant difference between these two groups (p = 0.466). In contrast, significantly more SE cells were GFP+/myosin VIIa+ in the DAPT group (7.5 ± 3.0) than in the DMSO group (0.5 ± 0.6) (p = 0.004) (Table 1). In both cases, GFP+/myosin VIIa+ cells appeared to be confined to the striola/juxtastriolar region (data not shown). We compared these data to those obtained from utricles cultured with DAPT or DMSO for the same period after a 1 d treatment with neomycin (Table 1). Neomycin treatment had no significant effect on numbers of GFP+ cells (p = 0.657) or GFP+/myosin VIIa+ cells in cultures containing DMSO alone (p = 0.272) or on GFP+ cells in cultures with DAPT (p = 0.764). However, significantly more GFP+/myosin VIIa+ cells were seen in DAPT-treated cultures when neomycin was omitted than when neomycin was present (7.5 ± 3.0 vs 2.3 ± 1.8; p = 0.005).
These findings indicate that a similar degree of new hair cell differentiation was initiated in adult mouse utricles regardless of whether hair cell loss was induced by neomycin or by changes associated with culturing. In contrast, DAPT seems to promote more overt hair cell differentiation when neomycin is absent.
γ-Secretase inhibition promotes conversion of supporting cells into hair cells without cell division
In nonmammals that readily regenerate hair cells, new hair cells arise from supporting cells via two mechanisms: renewed mitosis or direct conversion (transdifferentiation) without mitosis (for review, see Stone and Cotanche, 2007; Brignull et al., 2009). To determine whether γ-secretase promotes new hair cell regeneration by pushing more supporting cells to enter the cell cycle, we assessed BrdU uptake in utricles that were explanted, cultured with neomycin for 1 d, and maintained with 50 μm DAPT or 0.5% DMSO for 4, 6, or 10 more days (n = 6–8 utricles per group). BrdU was present in media for the entire culture period after neomycin treatment. In addition, we examined BrdU labeling in utricles that were explanted, cultured with neomycin for 1 d, and maintained with 50 μm DAPT or 0.5% DMSO for 21 d, with BrdU present for the last 7 d (n = 4–6 utricles per group). Although BrdU+ nuclei were abundant throughout the connective tissue underlying the SE in all utricles examined, they were extremely rare in the SE of DMSO- or DAPT-treated utricles (1–2 cells per SE were seen at most, regardless of the BrdU labeling paradigm; data not shown). These findings demonstrated that inhibition of γ-secretase did not trigger significant mitotic activity in supporting cells.
If supporting cells give rise to new hair cells by direct conversion, one would predict that ATOH1 would first accumulate in supporting cells and would subsequently switch to hair cells as the conversion is occurring. In support of this, we found that 74% (±31%) of ATOH1+ nuclei were located in the supporting cell nuclear layer at 4 d after neomycin, and this number dropped to 7% (±6%) at 6 d (p = 0.006). These observations suggest that supporting cells upregulate ATOH1 and then transit into the hair cell layer and differentiate additional hair cell features. A similar trend over time was seen with the Atoh1 adenoviral reporter.
These findings demonstrate that inhibition of γ-secretase after in vitro hair cell damage increases the number of supporting cells in adult mouse utricles that reactivate Atoh1 and undergo phenotypic conversion into hair cell-like cells without dividing.
Transcription of notch target genes is disrupted following γ-secretase inhibition
γ-Secretase has several substrates (Beel and Sanders, 2008). Hence, it is unclear whether the effects we observed with DAPT were a direct result of inhibiting notch signaling. To address this question, we first used qRTPCR to examine whether notch pathway transcripts are detected in utricles cultured with neomycin for 1 d followed by 3 d with 0.5% DMSO. Transcripts for Dll1 and Jag2 were most abundant, at one-fifth to one-third the level of β-actin, respectively (Fig. 6A). Transcripts for Notch1–4, Hes1, Hey1, and Hey3 were less abundant (∼1/1000 of β-actin). Hes5 transcripts were very low (∼1/10,000 the level of β-actin). For comparison, Hes5 transcripts were 1/1000 the level of β-actin in P1 mouse brain (data not shown). We also detected immunoreactivity for Jag1 in a pattern resembling that described by Oesterle et al. (2008) (data not shown). These findings demonstrate that notch pathway genes are expressed in adult mouse utricles after in vitro hair cell damage.
Next, we examined whether DAPT treatment causes a decrease in transcripts for notch targets, Hes1, Hey1, and Hey3, which is predicted if DAPT reduces notch activity. Utricles were cultured for 3 d with either 0.5% DMSO or 50 μm DAPT after an initial 1 d treatment with neomycin. DAPT significantly reduced transcripts for Hes1, Hey1, and Hey3, compared to DMSO (p = 0.035) (Fig. 6B). This finding supports the hypothesis that DAPT promotes hair cell regeneration in adult mouse utricles by inhibiting notch activity.
Hair cell regeneration increases upon inhibition of TACE
If DAPT's positive effects on hair cell regeneration are indeed notch dependent, then inhibition of a second enzyme required for notch activity should have similar effects. To test this hypothesis, utricles were explanted, transduced with Ad5-Atoh1-GFP, cultured for 1 d with neomycin, and then cultured with 50 μm TAPI-1, which inhibits a second notch-cleaving enzyme TACE, for 6 additional days. Utricles treated with TAPI-1 had 144.8 (±79.1) GFP+ cells per SE, while those treated with DMSO had 67.7 (±49.4) GFP+ cells per SE (p = 0.036) (n = 6 utricles for TAPI-1 and 9 utricles for DMSO). Utricles cultured with TAPI-1 also had significantly more GFP+/myosin VIIa+ cells per SE (2.0 ± 1.4) than those treated with DMSO (0.2 ± 0.4) (p = 0.003), with a similar focus in the striolar region as DAPT-treated utricles. Although TAPI-1 had a less pronounced effect on promoting differentiation of myosin VIIa immunoreactivity than DAPT, these results are consistent with the interpretation that inactivation of notch signaling promotes new hair cell differentiation in the adult mouse utricle following damage.
Discussion
Hair cell differentiation is reactivated in the adult mouse utricle after hair cell damage in vitro
In mammals, it is well established that hair cells are not replaced in adult cochleae after systemic ototoxin treatment (e.g., Roberson and Rubel, 1994; Forge et al., 1998). However, some degree of hair cell replacement does occur in mature mammalian utricles. Forge et al. (1993, 1998) described the emergence of immature-appearing hair cells after gentamicin-induced hair cell loss in adult guinea pig utricles and a subsequent increase in more mature-appearing hair cells. A similar finding was reported for the adult mouse utricle by Kawamoto et al. (2009). Immature hair cells were detectable by the second week after damage by their short stereociliary bundles or cytoplasmic properties (e.g., dense polyribosomes) in electron micrographs. The relative contributions of cellular repair and regeneration to the return of the hair cell profiles following damage is unclear. The ambiguity exists in part because it is difficult to completely rid the utricle of original hair cells using in vivo drug treatments, and some capacity for repair of injured hair cells has been documented (Sobkowicz et al., 1992; Zheng et al., 1999; Gale et al., 2002). Further, while studies have strategically chronicled the loss of gross, ultrastructural, or molecular evidence for original hair cells, they have not systematically examined the reactivation of early developmental gene programs that would presumably accompany production of new hair cells as opposed to hair cell repair.
In the current study, we used an in vitro damage method to kill most original hair cells in the adult mouse utricle. We looked for molecular evidence of new hair cell differentiation by tracking transcriptional reactivation of the basic helix-loop-helix transcription factor, Atoh1. During inner ear development, Atoh1 is transcribed at a low level in progenitor cells (Woods et al., 2004), but it becomes pronounced in nascent embryonic hair cell cells (Bermingham et al., 1999; Woods et al., 2004), which then accumulate ATOH1 protein (Chen et al., 2002). Once hair cells have matured, Atoh1 transcription is severely reduced (Shailam et al., 1999; Woods et al., 2004). Damage to hair cells, caused by either neomycin treatment or culture conditions, triggered many supporting cells to increase Atoh1 enhancer activity as early as 4 d in vitro and continuing over a 3 week culture period. However, only a small fraction of cells accumulated ATOH1 protein, acquired high levels of myosin VIIa, a marker of mature hair cells, or developed a stereociliary bundle. Therefore, although numerous supporting cells in the adult mouse utricle spontaneously reactivate a developmental gene program characteristic of early differentiating hair cells after damage, only rare cells acquire features typical of mature hair cells during a 3 week period in culture. Our observations are consistent with findings by Forge et al. (1993) and Kawamoto et al. (2009), even after months of recovery from aminoglycoside treatment in vivo. However, our findings are in stark contrast to the response of the mature avian utricular or auditory SE to in vitro hair cell loss, where hundreds of new hair cells differentiate within days of damage (Matsui et al., 2000; Shang et al., 2010; Warchol and Montcouquiol, 2010).
Hair cell regeneration is antagonized by notch activity
We investigated whether levels of hair cell regeneration can be improved by inhibiting the notch pathway. Recent studies in two species of animals that naturally regenerate hair cells—chickens and zebrafish—showed that notch activity is upregulated in inner ear sensory epithelia and lateral line neuromasts after hair cell damage, where it modulates the number of new hair cells that are ultimately regenerated (Ma et al., 2008; Daudet et al., 2009). We demonstrate that inhibition of γ-secretase with DAPT significantly reduced notch signaling in adult mouse utricles and increased Atoh1 transcriptional activity, specifically in supporting cells. More importantly, DAPT pushed more supporting cells to progress to later stages of hair cell differentiation, including development of stereociliary bundles. We found similar results with an inhibitor of TACE, a second enzyme required for notch activity. These findings implicate a role for notch-mediated lateral inhibition in antagonizing hair cell regeneration in adult mouse utricles. Additional studies are required to characterize how notch exerts this antagonistic influence. It is important to note is that inhibition of notch signaling with DAPT did not prevent or limit regeneration of hair cells, which is similar to what has been reported for nonmammals (Ma et al., 2008; Daudet et al., 2009). Therefore, notch activation is not required to prime supporting cells to transdifferentiate into hair cells, as one might hypothesize given notch's role in specifying hair cell progenitors during inner ear development (Daudet and Lewis, 2005; Kiernan et al., 2006; Daudet et al., 2007; Hayashi et al., 2008; Hartman et al., 2010).
Notch activity blocks a nonmitotic form of transdifferentiation
Several observations indicate that supporting cells form new hair cells after damage, in the presence or absence of notch activity, by direct transdifferentiation, or conversion into hair cells without cell division. First, the adenoviral Atoh1-GFP reporter that we used was delivered only to supporting cells, and GFP was later detected in hair cells. Second, ATOH1+ cells transitioned over time from the supporting cell layer into the hair cell layer and went from being myosin VIIa− to myosin VIIa+. Third, very little BrdU uptake was seen in supporting cells cultured with either DMSO or DAPT. Our conclusion that utricular hair cell regeneration is primarily nonmitotic is consistent with studies of adult rodent utricles after in vivo hair cell damage (e.g., Forge et al., 1993; Kawamoto et al., 2009).
Regional variation in supporting cell responses and regulation
Spontaneous differentiation of new hair cells was limited to the area in and around the striola, despite widespread hair cell loss throughout the utricular SE. Inhibition of γ-secretase or TACE caused increased hair cell regeneration in this same place, but not elsewhere. We do not yet know which notch ligands or effectors antagonize hair cell regeneration in the striola. Hartman et al. (2009) showed that Hes5-GFP fluorescence is pronounced in extrastriolar regions in control utricles, but we detected extremely low levels of Hes5 transcripts. Moreover, hair cell regeneration was not increased in regions correlated with high Hes5 GFP fluorescence after γ-secretase inhibition. These findings suggest that other HEY/HES proteins beside HES5 must antagonize hair cell regeneration in the striola. Our results also suggest notch signaling does not play a prominent role in attenuating hair cell regeneration in extrastriolar regions. However, it is also possible that signals promoting hair cell regeneration are insufficient in extrastriolar regions or additional inhibitory pathways are active there. These regional differences provide opportunities to learn about other signals controlling hair cell regeneration in the inner ear.
Hair cell damage in culture
Aminoglycoside treatment has been used previously to induce hair cell loss in cultured rodent utricles (e.g., Warchol et al., 1993; Cunningham et al., 2002). We found that 1 d treatments with high-dose (4 mm) neomycin caused 88% loss of hair cells in mouse utricles by 4 d in vitro. Incomplete hair cell loss makes it more challenging to rule out hair cell repair. However, we resisted using higher-dose neomycin, because we worried that it would be directly toxic to supporting cells and disrupt regeneration. Complete hair cell loss is not required to induce regenerative responses in supporting cells. This is illustrated by our findings in cultures lacking neomycin as well as in other studies (e.g., Oesterle et al., 1993; Yamashita and Oesterle, 1995). Our observation that Atoh1 is reactivated in supporting cells after hair cell damage, whether it be drug-induced or culture-induced, strengthens the evidence that hair cell damage consistently triggers some supporting cells in adult mouse utricles to begin to convert into hair cells.
Incomplete hair cell lesions could be advantageous for hair cell regeneration studies for the following reasons: they may better represent the types of lesions seen in humans with hearing or balance disorders, and they may involve less damage to supporting cells and accessory tissues in the inner ear, enabling better regenerative responses. Consistent with this latter idea, we found that γ-secretase inhibition promoted more overt hair cell differentiation in the absence of neomycin.
Footnotes
This work was supported by the Hearing Regeneration Initiative (an anonymous privately supported consortium at the Virginia Merrill Bloedel Hearing Research Center) and NIH Grants DC03696 (R01, J.S.S.), DC003944 (R01, E.C.O.), DC006437 (K08, C.R.H.), DC00018 (T32, Otolaryngology), DC04661 (P30, Rubel), and HD02274 (P30, Guralnick). We thank Jane Johnson (University of Texas Southwestern Medical School) for donating polyclonal anti-MATH1 antibody and the J2XnGFP construct. We appreciate Lisa Cunningham (Medical University of South Carolina) for sharing myosin VIIa labeling protocols and Stefan Heller (Stanford University) for donating guinea pig anti-myosin VIIa antibodies. We appreciate constructive comments on the manuscript by David Raible and Edwin Rubel. We thank Edwin Rubel for sharing facilities, Robin Gibson for assistance with PCR, Debbie Bratt and Ming Xiao for assistance with virus generation, Jia Lin Shang for help with immunolabeling, Glen MacDonald for assistance with microscopy, and Kevin Whitham and Brandon Warren for assistance with computer technology.
The authors declare no competing financial interests.
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