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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Nov 9;67(Pt 12):o3255. doi: 10.1107/S1600536811046897

2-(3,4-Dimeth­oxy­phen­yl)-1H-benzimidazole

Aliakbar Dehno Khalaji a, Alireza Foroghnia b, Mohammad Ali Khalilzadeh b, Karla Fejfarová c,*, Michal Dušek c
PMCID: PMC3238911  PMID: 22199764

Abstract

In title compound, C15H14N2O2, the dihedral angle between the 3,4-dimeth­oxy­phenyl group and the benzimidazole system is 26.47 (6)°. In the crystal, neighbouring mol­ecules are linked by N—H⋯N hydrogen bonds into C(4) chains propagating along the c-axis direction. The crystal structure also features weak C—H⋯O inter­actions.

Related literature

For a related structure, further synthetic details and background references to imidazolines, see: Khalaji et al. (2008). For related structures, see: Kia et al. (2008, 2009); Rashid et al. (2007).graphic file with name e-67-o3255-scheme1.jpg

Experimental

Crystal data

  • C15H14N2O2

  • M r = 254.3

  • Orthorhombic, Inline graphic

  • a = 9.2274 (8) Å

  • b = 15.0109 (9) Å

  • c = 9.2681 (3) Å

  • V = 1283.74 (14) Å3

  • Z = 4

  • Cu Kα radiation

  • μ = 0.72 mm−1

  • T = 120 K

  • 0.40 × 0.21 × 0.09 mm

Data collection

  • Agilent Xcalibur diffractometer with an Atlas (Gemini ultra Cu) detector

  • Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010) T min = 0.75, T max = 1

  • 12506 measured reflections

  • 1982 independent reflections

  • 1919 reflections with I > 3σ(I)

  • R int = 0.024

Refinement

  • R[F 2 > 3σ(F 2)] = 0.026

  • wR(F 2) = 0.072

  • S = 1.46

  • 1982 reflections

  • 174 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.08 e Å−3

  • Δρmin = −0.11 e Å−3

Data collection: CrysAlis PRO (Agilent, 2010); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR2002 (Burla et al., 2003); program(s) used to refine structure: JANA2006 (Petříček et al., 2006); molecular graphics: DIAMOND (Brandenburg & Putz, 2005); software used to prepare material for publication: JANA2006.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811046897/hb6490sup1.cif

e-67-o3255-sup1.cif (16.9KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811046897/hb6490Isup2.hkl

e-67-o3255-Isup2.hkl (78.3KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811046897/hb6490Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C14—H14c⋯O2i 0.96 2.49 3.224 (2) 133
C15—H15b⋯O1ii 0.96 2.50 3.372 (2) 151
N1—H1⋯N2iii 0.903 (19) 2.01 (2) 2.887 (2) 164.6 (16)

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

We acknowledge Golestan University and the Islamic Azad University, Qaemshahr, for partial support of this work, the Institutional Research Plan No. AVOZ10100521 of the Institute of Physics and the Praemium Academiae Project of the Academy of Sciences of the Czech Republic.

supplementary crystallographic information

Comment

As part of our ongoing studies of imidazoline derivatives (Khalaji et al., 2008), we now report the synthesis and structure of the title compound, (I).

The dihedral angle between the N1/N2/C1—C7 and C8—C13 aromatic ring planes in (I) is 26.47 (6)°, which is comparable with related structures (Khalaji et al., 2008; Kia et al., 2008, 2009; Rashid et al., 2007). Atoms C14 and C15 in (I) are displaced from the mean plane of the C8—C13 ring by 0.1134 (17) Å and 0.1756 (18) Å, respectively.

In the crystal of (I), an N—H···N hydrogen bond links the molecules into chains propagating in [001] direction (Fig. 2). There are no aromatic π-π stacking interactions in (I) as the closest centroid-centroid separation of aromatic rings is 4.419 (1) Å, which contrasts with the situation in 2-(4-fluorophenyl)-1H-benzimidazole (Rashid et al., 2007) in which both N—H···N and π-π stacking help to establish the packing. The crystal structure of (I) is further stabilized by weak C—H···O interactions.

Experimental

The synthetic method used for the preparation of (I) was based on previous work (Khalaji et al., 2008), except that 3,4-dimethoxybenzaldehyde (2 mmol) was used. Light yellow slabs of (I) were obtained by evaporation of a methanol solution of (I) held at room temperature. Anal. Calc. for C15H14N2O2 (MW: 254.30): C, 70.85; H, 5.55; N, 11.01%. Found: C, 70.92; H, 5.65; N, 11.08%. Yield: 73%. IR (KBr pellet, cm-1): 2941, 2977, 3006 (CH aliphatic and aromatic), 3054 (s, –C—HN–), 1624 (s, C=N), 1504, 1588, 1606 (C—C aromatic). 1H-NMR (500 MHz, CDCl3, δ(p.p.m.)): 3.82 (s, 3H), 3.87 (s, 3H), 7.11 (d, 1H), 7.17 (dd, 2H), 7.57 (s, 2H), 7.57–7.79 (m, 2H), 12.78 (s, 1H).

Refinement

All hydrogen atoms were discernible in difference Fourier maps and could be refined to reasonable geometry. According to common practice they were nevertheless kept in ideal positions with C–H distance 0.96 Å during the refinement. The isotropic atomic displacement parameters of hydrogen atoms were evaluated as 1.5×Ueq(C) for methyl groups and 1.2×Ueq(C, N) for all other hydrogen atoms.

Figures

Fig. 1.

Fig. 1.

The structure of the title compound. Displacement ellipsoids are drawn at the 50% probability level.

Fig. 2.

Fig. 2.

The crystal packing of the title compound, viewed along the a axis. Hydrogen bonds are drawn as dashed lines. Hydrogen atoms not participating in hydrogen bonds were omitted for clarity.

Crystal data

C15H14N2O2 F(000) = 536
Mr = 254.3 Dx = 1.315 Mg m3
Orthorhombic, Pca21 Cu Kα radiation, λ = 1.5418 Å
Hall symbol: P 2c -2ac Cell parameters from 8286 reflections
a = 9.2274 (8) Å θ = 2.9–67°
b = 15.0109 (9) Å µ = 0.72 mm1
c = 9.2681 (3) Å T = 120 K
V = 1283.74 (14) Å3 Slab, light yellow
Z = 4 0.40 × 0.21 × 0.09 mm

Data collection

Agilent Xcalibur diffractometer with an Atlas (Gemini ultra Cu) detector 1982 independent reflections
Radiation source: Enhance Ultra (Cu) X-ray Source 1919 reflections with I > 3σ(I)
mirror Rint = 0.024
Detector resolution: 10.3784 pixels mm-1 θmax = 67.1°, θmin = 2.9°
Rotation method data acquisition using ω scans h = −11→11
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010) k = −17→17
Tmin = 0.75, Tmax = 1 l = −9→11
12506 measured reflections

Refinement

Refinement on F2 54 constraints
R[F2 > 2σ(F2)] = 0.026 H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.072 Weighting scheme based on measured s.u.'s w = 1/[σ2(I) + 0.0016I2]
S = 1.46 (Δ/σ)max = 0.047
1982 reflections Δρmax = 0.08 e Å3
174 parameters Δρmin = −0.11 e Å3
0 restraints

Special details

Experimental. CrysAlisPro, Agilent Technologies (2010), Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Refinement. The refinement was carried out against all reflections. The conventional R-factor is always based on F. The goodness of fit as well as the weighted R-factor are based on F and F2 for refinement carried out on F and F2, respectively. The threshold expression is used only for calculating R-factors etc. and it is not relevant to the choice of reflections for refinement.The program used for refinement, Jana2006, uses the weighting scheme based on the experimental expectations, see _refine_ls_weighting_details, that does not force S to be one. Therefore the values of S are usually larger than the ones from the SHELX program.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.50788 (10) 0.93193 (6) 0.50931 (11) 0.0289 (3)
O2 0.26137 (11) 0.89618 (7) 0.39223 (16) 0.0325 (3)
N1 0.77384 (12) 0.66702 (8) 0.08732 (18) 0.0233 (3)
N2 0.86211 (11) 0.69056 (8) 0.30939 (17) 0.0238 (3)
C1 0.75266 (14) 0.70471 (9) 0.21870 (18) 0.0226 (4)
C2 0.90804 (14) 0.62618 (9) 0.09065 (19) 0.0228 (4)
C3 0.98463 (15) 0.57777 (9) −0.01205 (19) 0.0264 (4)
C4 1.11744 (15) 0.54402 (10) 0.0297 (2) 0.0281 (4)
C5 1.17424 (16) 0.55964 (9) 0.1677 (2) 0.0285 (4)
C6 1.09725 (15) 0.60805 (9) 0.2701 (2) 0.0268 (4)
C7 0.96186 (14) 0.64097 (9) 0.2299 (2) 0.0228 (4)
C8 0.62258 (13) 0.75563 (9) 0.25552 (18) 0.0238 (4)
C9 0.63170 (14) 0.82035 (9) 0.36407 (19) 0.0238 (4)
C10 0.51002 (15) 0.86699 (9) 0.4062 (2) 0.0244 (4)
C11 0.37543 (14) 0.84855 (10) 0.34023 (19) 0.0261 (4)
C12 0.36736 (14) 0.78589 (11) 0.2312 (2) 0.0293 (4)
C13 0.49052 (15) 0.73941 (10) 0.1886 (2) 0.0277 (4)
C14 0.63841 (15) 0.94452 (11) 0.5909 (2) 0.0311 (4)
C15 0.12101 (16) 0.87431 (12) 0.3367 (2) 0.0413 (5)
H3 0.947018 0.568253 −0.107386 0.0316*
H4 1.172283 0.508955 −0.037558 0.0337*
H5 1.268095 0.53647 0.191941 0.0342*
H6 1.135836 0.618397 0.364821 0.0322*
H9 0.723198 0.832316 0.409397 0.0286*
H12 0.276306 0.774417 0.184648 0.0352*
H13 0.48424 0.696024 0.112722 0.0333*
H14a 0.62263 0.989168 0.663353 0.0467*
H14b 0.665129 0.889441 0.636306 0.0467*
H14c 0.714823 0.963371 0.527559 0.0467*
H15a 0.049359 0.91136 0.381853 0.062*
H15b 0.119532 0.883995 0.234322 0.062*
H15c 0.10002 0.812894 0.356683 0.062*
H1 0.7167 (18) 0.6702 (11) 0.008 (2) 0.028*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0310 (5) 0.0286 (5) 0.0270 (6) 0.0021 (4) −0.0007 (4) −0.0067 (4)
O2 0.0253 (5) 0.0362 (6) 0.0359 (6) 0.0074 (4) −0.0002 (4) −0.0064 (5)
N1 0.0238 (5) 0.0285 (6) 0.0176 (6) 0.0003 (4) −0.0005 (5) −0.0009 (5)
N2 0.0239 (5) 0.0289 (6) 0.0186 (6) 0.0017 (4) 0.0007 (4) −0.0010 (5)
C1 0.0249 (6) 0.0252 (6) 0.0178 (6) −0.0029 (5) 0.0022 (5) 0.0003 (5)
C2 0.0240 (6) 0.0233 (6) 0.0209 (7) −0.0025 (5) 0.0012 (6) 0.0026 (5)
C3 0.0316 (7) 0.0282 (7) 0.0193 (7) −0.0032 (6) 0.0030 (5) −0.0011 (5)
C4 0.0299 (7) 0.0274 (7) 0.0268 (7) 0.0015 (5) 0.0081 (6) −0.0009 (6)
C5 0.0260 (7) 0.0315 (7) 0.0281 (7) 0.0037 (6) 0.0017 (6) 0.0022 (6)
C6 0.0262 (6) 0.0319 (7) 0.0224 (8) 0.0003 (5) −0.0016 (5) −0.0005 (6)
C7 0.0241 (6) 0.0250 (7) 0.0193 (7) −0.0016 (5) 0.0035 (6) 0.0004 (5)
C8 0.0255 (7) 0.0255 (7) 0.0205 (7) 0.0008 (5) 0.0008 (5) 0.0014 (5)
C9 0.0247 (6) 0.0264 (7) 0.0204 (7) −0.0004 (5) −0.0001 (5) 0.0020 (6)
C10 0.0304 (7) 0.0236 (7) 0.0193 (7) −0.0002 (5) 0.0023 (5) 0.0015 (6)
C11 0.0265 (7) 0.0280 (7) 0.0238 (7) 0.0028 (5) 0.0033 (5) 0.0019 (6)
C12 0.0259 (7) 0.0362 (8) 0.0258 (8) 0.0018 (5) −0.0037 (6) −0.0014 (6)
C13 0.0303 (7) 0.0314 (7) 0.0215 (7) −0.0001 (6) −0.0013 (5) −0.0030 (6)
C14 0.0336 (7) 0.0308 (8) 0.0291 (8) −0.0019 (5) −0.0021 (6) −0.0070 (6)
C15 0.0282 (8) 0.0531 (10) 0.0428 (11) 0.0092 (7) −0.0067 (7) −0.0144 (8)

Geometric parameters (Å, °)

O1—C10 1.3651 (18) C6—C7 1.3942 (19)
O1—C14 1.4345 (18) C6—H6 0.96
O2—C11 1.3606 (18) C8—C9 1.401 (2)
O2—C15 1.4319 (19) C8—C13 1.389 (2)
N1—C1 1.357 (2) C9—C10 1.380 (2)
N1—C2 1.3820 (17) C9—H9 0.96
N1—H1 0.903 (19) C10—C11 1.412 (2)
N2—C1 1.331 (2) C11—C12 1.383 (2)
N2—C7 1.3943 (19) C12—C13 1.391 (2)
C1—C8 1.4633 (19) C12—H12 0.96
C2—C3 1.391 (2) C13—H13 0.96
C2—C7 1.401 (2) C14—H14a 0.96
C3—C4 1.381 (2) C14—H14b 0.96
C3—H3 0.96 C14—H14c 0.96
C4—C5 1.402 (3) C15—H15a 0.96
C4—H4 0.96 C15—H15b 0.96
C5—C6 1.391 (2) C15—H15c 0.96
C5—H5 0.96
C10—O1—C14 116.79 (11) C9—C8—C13 119.67 (12)
C11—O2—C15 116.86 (13) C8—C9—C10 120.42 (13)
C1—N1—C2 107.09 (13) C8—C9—H9 119.7897
C1—N1—H1 128.4 (11) C10—C9—H9 119.7883
C2—N1—H1 124.4 (11) O1—C10—C9 124.92 (13)
C1—N2—C7 104.62 (14) O1—C10—C11 115.50 (12)
N1—C1—N2 113.01 (12) C9—C10—C11 119.59 (15)
N1—C1—C8 123.04 (13) O2—C11—C10 115.09 (14)
N2—C1—C8 123.95 (15) O2—C11—C12 125.08 (13)
N1—C2—C3 132.21 (16) C10—C11—C12 119.83 (13)
N1—C2—C7 105.55 (13) C11—C12—C13 120.32 (13)
C3—C2—C7 122.23 (13) C11—C12—H12 119.839
C2—C3—C4 116.80 (16) C13—C12—H12 119.8382
C2—C3—H3 121.5999 C8—C13—C12 120.14 (15)
C4—C3—H3 121.5996 C8—C13—H13 119.9308
C3—C4—C5 121.72 (15) C12—C13—H13 119.9316
C3—C4—H4 119.1383 O1—C14—H14a 109.4704
C5—C4—H4 119.138 O1—C14—H14b 109.4712
C4—C5—C6 121.28 (14) O1—C14—H14c 109.4714
C4—C5—H5 119.362 H14a—C14—H14b 109.4712
C6—C5—H5 119.3623 H14a—C14—H14c 109.471
C5—C6—C7 117.42 (16) H14b—C14—H14c 109.4722
C5—C6—H6 121.2877 O2—C15—H15a 109.4714
C7—C6—H6 121.2879 O2—C15—H15b 109.4715
N2—C7—C2 109.72 (12) O2—C15—H15c 109.4712
N2—C7—C6 129.76 (16) H15a—C15—H15b 109.4715
C2—C7—C6 120.52 (14) H15a—C15—H15c 109.4712
C1—C8—C9 118.71 (12) H15b—C15—H15c 109.4705
C1—C8—C13 121.59 (14)
C9—C10—O1—C14 −7.8 (2) N1—C1—C8—C9 −154.38 (14)
C10—C11—O2—C15 −174.97 (15)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C14—H14c···O2i 0.96 2.49 3.224 (2) 133
C15—H15b···O1ii 0.96 2.50 3.372 (2) 151
N1—H1···N2iii 0.903 (19) 2.01 (2) 2.887 (2) 164.6 (16)

Symmetry codes: (i) x+1/2, −y+2, z; (ii) −x+1/2, y, z−1/2; (iii) −x+3/2, y, z−1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB6490).

References

  1. Agilent (2010). CrysAlis PRO Agilent Technologies, Yarnton, England.
  2. Brandenburg, K. & Putz, H. (2005). DIAMOND Crystal Impact GbR, Bonn, Germany.
  3. Burla, M. C., Camalli, M., Carrozzini, B., Cascarano, G. L., Giacovazzo, C., Polidori, G. & Spagna, R. (2003). J. Appl. Cryst. 36, 1103.
  4. Khalaji, A. D., Jian, F., Xiao, H. & Harrison, W. T. A. (2008). Acta Cryst. E64, o1093. [DOI] [PMC free article] [PubMed]
  5. Kia, R., Fun, H.-K. & Kargar, H. (2008). Acta Cryst. E64, o2406. [DOI] [PMC free article] [PubMed]
  6. Kia, R., Fun, H.-K. & Kargar, H. (2009). Acta Cryst. E65, o338–o339. [DOI] [PMC free article] [PubMed]
  7. Petříček, V., Dušek, M. & Palatinus, L. (2006). JANA2006. Institute of Physics, Praha, Czech Republic.
  8. Rashid, N., Tahir, M. K., Kanwal, S., Yusof, N. M. & Yamin, B. M. (2007). Acta Cryst. E63, o1402–o1403.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811046897/hb6490sup1.cif

e-67-o3255-sup1.cif (16.9KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811046897/hb6490Isup2.hkl

e-67-o3255-Isup2.hkl (78.3KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811046897/hb6490Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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