Abstract
In the title compound, C16H13N3, the cyclohexene ring adopts a sofa conformation. An intramolecular N—H⋯N hydrogen bond generates an S(7) ring motif. In the crystal, the molecules are linked by pairs of N—H⋯N interactions, forming centrosymmetric dimers with an R 2 2(14) motif.
Related literature
For the biological activity of carbazole derivatives, see: Magnus et al. (1992 ▶); Abraham (1975 ▶); Saxton (1983 ▶); Phillipson & Zenk (1980 ▶); Bergman & Pelcman (1990 ▶); Bonesi et al. (2004 ▶); Chakraborty et al. (1965 ▶); Kirtikar & Basu (1933 ▶); Chakraborty et al. (1973 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶). For asymmetry parameters, see: Nardelli (1983 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).
Experimental
Crystal data
C16H13N3
M r = 247.29
Triclinic,
a = 7.6396 (9) Å
b = 8.4381 (8) Å
c = 10.8967 (13) Å
α = 88.395 (6)°
β = 71.392 (7)°
γ = 71.217 (6)°
V = 628.08 (12) Å3
Z = 2
Mo Kα radiation
μ = 0.08 mm−1
T = 296 K
0.17 × 0.16 × 0.15 mm
Data collection
Bruker SMART APEX CCD detector diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 1998 ▶) T min = 0.986, T max = 0.988
12507 measured reflections
3692 independent reflections
2815 reflections with I > 2σ(I)
R int = 0.026
Refinement
R[F 2 > 2σ(F 2)] = 0.050
wR(F 2) = 0.154
S = 1.03
3692 reflections
177 parameters
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.32 e Å−3
Δρmin = −0.19 e Å−3
Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT-Plus (Bruker, 1998 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶).
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681104654X/bt5683sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681104654X/bt5683Isup2.hkl
Supplementary material file. DOI: 10.1107/S160053681104654X/bt5683Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N1—H1⋯N16 | 0.86 (2) | 2.59 (2) | 3.3099 (17) | 141.4 (16) |
| N1—H1⋯N16i | 0.86 (2) | 2.49 (2) | 3.2150 (17) | 142.8 (16) |
Symmetry code: (i)
.
Acknowledgments
The authors thank Solid State Unit, Indian Institute of Science, Bangalore, India, for the data collection.
supplementary crystallographic information
Comment
Carbazole alkaloids obtained from naturally occurring sources have been the subject of extensive research, mainly because of their widespread applications in traditional medicine (Bergman & Pelcman, 1990; Bonesi et al., 2004; Chakraborty et al., 1965; Kirtikar & Basu, 1933). Tetrahydrocarbazole systems are present in the framework of a number of indole-type alkaloids of biological interest (Magnus et al., 1992; Abraham, 1975; Saxton, 1983; Phillipson et al., 1980). These types of compounds possess significant antibiotic, anti-carcinogenic, antiviral and anti-inflammatory properties (Chakraborty et al., 1973). Against this background and to ascertain the molecular structure and conformation, the X-ray crystal structure determination of the title compound has been carried out.
The ORTEP plot of the molecule is shown in Fig. 1. The cyclohexane ring in the carbazole ring system adopts envelope conformation with the puckering parameters (Cremer & Pople, 1975) and the asymmetry parameters (Nardelli, 1983) are: q2=0.330 (1) Å, q3 = 0.262 (1) Å, φ2 = 168.7 (2)° and Δs(C2 & C5)= 8.6 (2)°. The sum of the bond angles around N1 [359.8°] is in accordance with sp2 hybridization. The bond lengths and bond angles of (C15—N16) 1.148 (2) Å, (C17—N18) 1.145 (2) Å, (C14—C15—N16) 178.8 (2)° and (C14—C17—N18) 178.6 (2)° show linear character of the cyano group, a feature observed in carbonitrile compounds.
The crystal packing reveals that symmetry-related molecules are linked by N—H···N interactions. The intramolecular N1—H1···N16 hydrogen bond generates a S(7) ring motif. The molecules at (x, y, z) and (2 - x, -1 - y, 1 - z) are linked by N1—H1···N16 hydrogen bonds into cyclic centrosymmetric R22(14) dimer.
Experimental
A mixture of 6-methyl-1-oxo-1,2,3,4-tetrahydrocarbazole (7.5 mmol), and melanonitrile (7.5 mmol), ammonium acetate (0.57 g, 8.125 mmol) and acetic acid (1.5 ml, 24.75 mmol) in 12.5 ml of toluene was stirred at 105°C for 5 h. On cooling the precipitate that formed was filtered off, washed with hexane (20 ml) and dried at 100°C to give a crude product of 6-Methyl-2-(1,2,3,4- tetrahydro-9H-carbazol-1-ylidene)propanedinitrile.The crystals of the title compound suitable for single XRD analysis were obtained by the slow evaporation method by using dichloroethane as solvent at room temperature.
Refinement
The N-bound H atom was located in a difference map and refined isotropically. C-bound H atoms were positioned geometrically (C–H = 0.93–0.97 Å) and allowed to ride on their parent atoms, with Uiso(H) = 1.5Ueq(C) for methyl H atoms and 1.2Ueq(C) for all other H atoms.
Figures
Fig. 1.
The molecular structure of the title compound, showing the atomic numbering and displacement ellipsoids drawn at the 50% probability level.
Fig. 2.
The crystal packing of the title compound. H atoms not involved in hydrogen bonding (dashed lines) have been omitted for clarity.
Crystal data
| C16H13N3 | Z = 2 |
| Mr = 247.29 | F(000) = 260 |
| Triclinic, P1 | Dx = 1.308 Mg m−3 |
| Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
| a = 7.6396 (9) Å | Cell parameters from 1675 reflections |
| b = 8.4381 (8) Å | θ = 2.0–30.6° |
| c = 10.8967 (13) Å | µ = 0.08 mm−1 |
| α = 88.395 (6)° | T = 296 K |
| β = 71.392 (7)° | Block, brown |
| γ = 71.217 (6)° | 0.17 × 0.16 × 0.15 mm |
| V = 628.08 (12) Å3 |
Data collection
| Bruker SMART APEX CCD detector diffractometer | 3692 independent reflections |
| Radiation source: fine-focus sealed tube | 2815 reflections with I > 2σ(I) |
| graphite | Rint = 0.026 |
| ω scans | θmax = 30.6°, θmin = 2.0° |
| Absorption correction: multi-scan (SADABS; Bruker, 1998) | h = −10→10 |
| Tmin = 0.986, Tmax = 0.988 | k = −12→11 |
| 12507 measured reflections | l = −15→15 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.050 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.154 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.03 | w = 1/[σ2(Fo2) + (0.0895P)2 + 0.0632P] where P = (Fo2 + 2Fc2)/3 |
| 3692 reflections | (Δ/σ)max < 0.001 |
| 177 parameters | Δρmax = 0.32 e Å−3 |
| 0 restraints | Δρmin = −0.19 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| N1 | 0.19262 (15) | 1.14409 (12) | 0.48492 (9) | 0.0374 (2) | |
| H1 | 0.140 (3) | 1.251 (3) | 0.4900 (18) | 0.073 (5)* | |
| C2 | 0.16168 (16) | 1.03889 (13) | 0.58442 (11) | 0.0348 (2) | |
| C3 | 0.02788 (16) | 1.08208 (13) | 0.71382 (10) | 0.0352 (2) | |
| C4 | 0.04245 (19) | 0.94137 (16) | 0.80188 (12) | 0.0446 (3) | |
| H4A | −0.0838 | 0.9623 | 0.8687 | 0.054* | |
| H4B | 0.1358 | 0.9420 | 0.8447 | 0.054* | |
| C5 | 0.1046 (2) | 0.76799 (16) | 0.73322 (13) | 0.0480 (3) | |
| H5A | 0.1234 | 0.6840 | 0.7947 | 0.058* | |
| H5B | 0.0007 | 0.7603 | 0.7033 | 0.058* | |
| C6 | 0.29157 (19) | 0.73000 (15) | 0.61842 (13) | 0.0452 (3) | |
| H6A | 0.4026 | 0.7046 | 0.6494 | 0.054* | |
| H6B | 0.3079 | 0.6323 | 0.5656 | 0.054* | |
| C7 | 0.28556 (17) | 0.87609 (14) | 0.53817 (11) | 0.0370 (2) | |
| C8 | 0.39448 (16) | 0.88053 (13) | 0.40647 (11) | 0.0363 (2) | |
| C9 | 0.53599 (18) | 0.75647 (15) | 0.30953 (12) | 0.0429 (3) | |
| H9 | 0.5779 | 0.6452 | 0.3286 | 0.051* | |
| C10 | 0.61190 (18) | 0.80110 (15) | 0.18626 (12) | 0.0430 (3) | |
| C11 | 0.54686 (18) | 0.97060 (16) | 0.15997 (12) | 0.0427 (3) | |
| H11 | 0.5987 | 0.9992 | 0.0763 | 0.051* | |
| C12 | 0.41057 (17) | 1.09577 (15) | 0.25181 (11) | 0.0400 (3) | |
| H12 | 0.3713 | 1.2069 | 0.2319 | 0.048* | |
| C13 | 0.33323 (16) | 1.04906 (14) | 0.37662 (11) | 0.0350 (2) | |
| C14 | −0.10538 (18) | 1.23850 (15) | 0.76265 (11) | 0.0402 (3) | |
| C15 | −0.1323 (2) | 1.38051 (16) | 0.68896 (13) | 0.0507 (3) | |
| N16 | −0.1573 (2) | 1.49658 (16) | 0.63094 (14) | 0.0757 (4) | |
| C17 | −0.2293 (2) | 1.26880 (16) | 0.89586 (12) | 0.0459 (3) | |
| N18 | −0.3258 (2) | 1.29469 (17) | 1.00271 (12) | 0.0639 (4) | |
| C19 | 0.7624 (2) | 0.67329 (19) | 0.07853 (15) | 0.0603 (4) | |
| H19A | 0.8867 | 0.6900 | 0.0587 | 0.090* | |
| H19B | 0.7228 | 0.6862 | 0.0026 | 0.090* | |
| H19C | 0.7735 | 0.5623 | 0.1057 | 0.090* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| N1 | 0.0432 (5) | 0.0282 (5) | 0.0350 (5) | −0.0081 (4) | −0.0091 (4) | 0.0063 (4) |
| C2 | 0.0378 (5) | 0.0310 (5) | 0.0351 (5) | −0.0105 (4) | −0.0126 (4) | 0.0079 (4) |
| C3 | 0.0371 (6) | 0.0354 (5) | 0.0354 (6) | −0.0134 (4) | −0.0140 (4) | 0.0074 (4) |
| C4 | 0.0483 (7) | 0.0428 (6) | 0.0390 (6) | −0.0122 (5) | −0.0131 (5) | 0.0138 (5) |
| C5 | 0.0533 (7) | 0.0390 (6) | 0.0503 (7) | −0.0155 (5) | −0.0161 (6) | 0.0180 (5) |
| C6 | 0.0508 (7) | 0.0323 (5) | 0.0477 (7) | −0.0084 (5) | −0.0161 (5) | 0.0126 (5) |
| C7 | 0.0387 (6) | 0.0325 (5) | 0.0394 (6) | −0.0109 (4) | −0.0134 (4) | 0.0084 (4) |
| C8 | 0.0372 (6) | 0.0308 (5) | 0.0394 (6) | −0.0102 (4) | −0.0119 (4) | 0.0059 (4) |
| C9 | 0.0421 (6) | 0.0322 (5) | 0.0473 (7) | −0.0083 (5) | −0.0095 (5) | 0.0034 (5) |
| C10 | 0.0411 (6) | 0.0385 (6) | 0.0435 (6) | −0.0111 (5) | −0.0075 (5) | −0.0010 (5) |
| C11 | 0.0436 (6) | 0.0428 (6) | 0.0383 (6) | −0.0153 (5) | −0.0081 (5) | 0.0044 (5) |
| C12 | 0.0436 (6) | 0.0345 (5) | 0.0384 (6) | −0.0118 (5) | −0.0104 (5) | 0.0087 (4) |
| C13 | 0.0364 (5) | 0.0314 (5) | 0.0355 (5) | −0.0104 (4) | −0.0110 (4) | 0.0051 (4) |
| C14 | 0.0452 (6) | 0.0370 (6) | 0.0361 (6) | −0.0138 (5) | −0.0100 (5) | 0.0040 (4) |
| C15 | 0.0575 (8) | 0.0348 (6) | 0.0448 (7) | −0.0081 (5) | −0.0038 (6) | 0.0020 (5) |
| N16 | 0.0935 (10) | 0.0380 (6) | 0.0602 (8) | −0.0035 (6) | 0.0026 (7) | 0.0117 (5) |
| C17 | 0.0528 (7) | 0.0391 (6) | 0.0413 (6) | −0.0140 (5) | −0.0107 (5) | 0.0027 (5) |
| N18 | 0.0785 (9) | 0.0543 (7) | 0.0450 (7) | −0.0193 (6) | −0.0046 (6) | 0.0014 (5) |
| C19 | 0.0588 (9) | 0.0472 (8) | 0.0544 (8) | −0.0072 (6) | −0.0008 (7) | −0.0068 (6) |
Geometric parameters (Å, °)
| N1—C13 | 1.3708 (15) | C8—C9 | 1.4088 (16) |
| N1—C2 | 1.3918 (14) | C8—C13 | 1.4106 (15) |
| N1—H1 | 0.86 (2) | C9—C10 | 1.3775 (18) |
| C2—C7 | 1.3906 (16) | C9—H9 | 0.9300 |
| C2—C3 | 1.4265 (16) | C10—C11 | 1.4088 (17) |
| C3—C14 | 1.3747 (16) | C10—C19 | 1.5081 (18) |
| C3—C4 | 1.5040 (15) | C11—C12 | 1.3738 (17) |
| C4—C5 | 1.5209 (18) | C11—H11 | 0.9300 |
| C4—H4A | 0.9700 | C12—C13 | 1.4004 (16) |
| C4—H4B | 0.9700 | C12—H12 | 0.9300 |
| C5—C6 | 1.5150 (19) | C14—C15 | 1.4198 (17) |
| C5—H5A | 0.9700 | C14—C17 | 1.4340 (17) |
| C5—H5B | 0.9700 | C15—N16 | 1.1478 (18) |
| C6—C7 | 1.4884 (15) | C17—N18 | 1.1445 (17) |
| C6—H6A | 0.9700 | C19—H19A | 0.9600 |
| C6—H6B | 0.9700 | C19—H19B | 0.9600 |
| C7—C8 | 1.4172 (16) | C19—H19C | 0.9600 |
| C13—N1—C2 | 108.39 (9) | C9—C8—C13 | 119.72 (10) |
| C13—N1—H1 | 124.4 (13) | C9—C8—C7 | 133.50 (11) |
| C2—N1—H1 | 127.0 (13) | C13—C8—C7 | 106.76 (10) |
| C7—C2—N1 | 108.68 (10) | C10—C9—C8 | 119.53 (11) |
| C7—C2—C3 | 123.14 (10) | C10—C9—H9 | 120.2 |
| N1—C2—C3 | 128.18 (10) | C8—C9—H9 | 120.2 |
| C14—C3—C2 | 125.69 (10) | C9—C10—C11 | 119.15 (11) |
| C14—C3—C4 | 119.19 (10) | C9—C10—C19 | 121.77 (12) |
| C2—C3—C4 | 115.11 (10) | C11—C10—C19 | 119.08 (12) |
| C3—C4—C5 | 114.33 (10) | C12—C11—C10 | 123.24 (11) |
| C3—C4—H4A | 108.7 | C12—C11—H11 | 118.4 |
| C5—C4—H4A | 108.7 | C10—C11—H11 | 118.4 |
| C3—C4—H4B | 108.7 | C11—C12—C13 | 117.21 (11) |
| C5—C4—H4B | 108.7 | C11—C12—H12 | 121.4 |
| H4A—C4—H4B | 107.6 | C13—C12—H12 | 121.4 |
| C6—C5—C4 | 112.68 (11) | N1—C13—C12 | 130.09 (10) |
| C6—C5—H5A | 109.1 | N1—C13—C8 | 108.75 (10) |
| C4—C5—H5A | 109.1 | C12—C13—C8 | 121.14 (10) |
| C6—C5—H5B | 109.1 | C3—C14—C15 | 124.22 (11) |
| C4—C5—H5B | 109.1 | C3—C14—C17 | 120.91 (11) |
| H5A—C5—H5B | 107.8 | C15—C14—C17 | 114.87 (11) |
| C7—C6—C5 | 110.49 (10) | N16—C15—C14 | 178.80 (16) |
| C7—C6—H6A | 109.6 | N18—C17—C14 | 178.61 (15) |
| C5—C6—H6A | 109.6 | C10—C19—H19A | 109.5 |
| C7—C6—H6B | 109.6 | C10—C19—H19B | 109.5 |
| C5—C6—H6B | 109.6 | H19A—C19—H19B | 109.5 |
| H6A—C6—H6B | 108.1 | C10—C19—H19C | 109.5 |
| C2—C7—C8 | 107.42 (10) | H19A—C19—H19C | 109.5 |
| C2—C7—C6 | 123.45 (11) | H19B—C19—H19C | 109.5 |
| C8—C7—C6 | 129.13 (11) | ||
| C13—N1—C2—C7 | 0.46 (13) | C8—C9—C10—C11 | 0.34 (19) |
| C13—N1—C2—C3 | −179.37 (11) | C8—C9—C10—C19 | −179.48 (12) |
| C7—C2—C3—C14 | −176.13 (11) | C9—C10—C11—C12 | 0.3 (2) |
| N1—C2—C3—C14 | 3.69 (19) | C19—C10—C11—C12 | −179.91 (13) |
| C7—C2—C3—C4 | 5.41 (16) | C10—C11—C12—C13 | −0.68 (19) |
| N1—C2—C3—C4 | −174.77 (10) | C2—N1—C13—C12 | 178.08 (11) |
| C14—C3—C4—C5 | 149.75 (12) | C2—N1—C13—C8 | −0.20 (13) |
| C2—C3—C4—C5 | −31.69 (15) | C11—C12—C13—N1 | −177.58 (11) |
| C3—C4—C5—C6 | 52.95 (15) | C11—C12—C13—C8 | 0.51 (18) |
| C4—C5—C6—C7 | −45.23 (15) | C9—C8—C13—N1 | 178.52 (10) |
| N1—C2—C7—C8 | −0.54 (13) | C7—C8—C13—N1 | −0.13 (13) |
| C3—C2—C7—C8 | 179.31 (10) | C9—C8—C13—C12 | 0.06 (17) |
| N1—C2—C7—C6 | −179.76 (10) | C7—C8—C13—C12 | −178.59 (10) |
| C3—C2—C7—C6 | 0.08 (18) | C2—C3—C14—C15 | 1.6 (2) |
| C5—C6—C7—C2 | 20.28 (17) | C4—C3—C14—C15 | −179.95 (12) |
| C5—C6—C7—C8 | −158.76 (12) | C2—C3—C14—C17 | −178.17 (11) |
| C2—C7—C8—C9 | −177.97 (13) | C4—C3—C14—C17 | 0.23 (17) |
| C6—C7—C8—C9 | 1.2 (2) | C3—C14—C15—N16 | 159 (8) |
| C2—C7—C8—C13 | 0.41 (13) | C17—C14—C15—N16 | −22 (9) |
| C6—C7—C8—C13 | 179.58 (11) | C3—C14—C17—N18 | 105 (7) |
| C13—C8—C9—C10 | −0.50 (18) | C15—C14—C17—N18 | −74 (7) |
| C7—C8—C9—C10 | 177.73 (12) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1···N16 | 0.86 (2) | 2.59 (2) | 3.3099 (17) | 141.4 (16) |
| N1—H1···N16i | 0.86 (2) | 2.49 (2) | 3.2150 (17) | 142.8 (16) |
Symmetry codes: (i) −x, −y+3, −z+1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BT5683).
References
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Associated Data
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Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681104654X/bt5683sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681104654X/bt5683Isup2.hkl
Supplementary material file. DOI: 10.1107/S160053681104654X/bt5683Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


