Abstract
In the title thione–Schiff base compound, C10H9N3O2S2, the dihedral angle between the benzene ring and the five-membered ring is 6.69 (8)°. An intramolecular O—H⋯N hydrogen bond forms an S 2 2(6) ring. In the crystal, inversion dimers linked by pairs of N—H⋯S interactions occur, generating R 2 2(8) ring motifs. The crystal structure features a S⋯S contact [3.3776 (7) Å], which is significantly shorter than the sum of the van der Waals radii (3.7 Å). The crystal structure also features C—H⋯O and π–π interactions [centroid–centroid distances = 3.4636 (9)–3.808 (1) Å].
Related literature
For standard values of bond lengths, see: Allen et al. (1987 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For the biological versatility of thione ligands see, for example: Kumar et al. (1988 ▶); Yadav et al. (1989 ▶). For a related structure, see: Zhang (2003 ▶). For van der Waals radii, see: Bondi, (1964 ▶).
Experimental
Crystal data
C10H9N3O2S2
M r = 267.32
Triclinic,
a = 6.2266 (2) Å
b = 8.0680 (2) Å
c = 11.9695 (3) Å
α = 83.027 (2)°
β = 77.993 (1)°
γ = 87.898 (1)°
V = 583.76 (3) Å3
Z = 2
Mo Kα radiation
μ = 0.45 mm−1
T = 291 K
0.11 × 0.08 × 0.05 mm
Data collection
Bruker SMART APEXII CCD area-detector diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.952, T max = 0.978
10303 measured reflections
2894 independent reflections
1990 reflections with I > 2σ(I)
R int = 0.030
Refinement
R[F 2 > 2σ(F 2)] = 0.040
wR(F 2) = 0.102
S = 1.02
2894 reflections
155 parameters
H-atom parameters constrained
Δρmax = 0.30 e Å−3
Δρmin = −0.25 e Å−3
Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶).
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811047362/ff2041sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811047362/ff2041Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811047362/ff2041Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| O1—H1⋯N1 | 0.85 | 1.84 | 2.616 (2) | 151 |
| N3—H3⋯S2i | 0.80 | 2.53 | 3.3163 (15) | 169 |
| C2—H2A⋯O1ii | 0.93 | 2.57 | 3.481 (2) | 167 |
| C3—H3A⋯O2iii | 0.93 | 2.52 | 3.442 (3) | 172 |
Symmetry codes: (i)
; (ii)
; (iii)
.
Acknowledgments
HK thanks PNU for financial support. RK thanks the Islamic Azad University. MNT thanks GC University of Sargodha, Pakistan, for the research facility.
supplementary crystallographic information
Comment
Compounds incorporating a thiadiazole ring have attracted much attention due to their biological activity (Kumar et al., 1988; Yadav et al., 1989). Here we report the crystal structure of a new Schiff base compound containing a thiadiazol ring system.
The asymmetric unit of the title compound, Fig. 1, comprises a thione-Schiff base ligand. The bond lengths (Allen et al., 1987) and angles are within the normal ranges and are comparable to the related structure (Zhang, 2003).
The dihedral angle between the benzene ring and the five-membered ring is 6.69 (8)°. An intramolecular O—H···N hydrogen bond makes S22(6) ring motif. Intermolecular N—H···S interactions link neighboring molecules into individual dimers with R22(8) ring motifs (Bernstein et al.,1995). The interesting feature of the crystal structure is a short S(1)···S(1)i [3.3776 (7)Å; (i) 1 - x,1 - y,1 - z ] contact which is significantly shorter than the sum of the Van der Waals radius of S atoms (Bondi, 1964). The crystal structure is stabilized by the intermolecular C—H···O, and π-π interactions [Cg1···Cg1iv = 3.4636 (9)Å, (iv) -1 - x, -y, 1 -z; Cg1···Cg2v = 3.5242 (10)Å, (v) 1 + x, y, z; Cg2···Cg2vi = 3.808 (1)Å, (vi) -x, 1 - y, -z Cg1 and Cg2 are centroids of S(1)/C(8)/N(2)/N(3)/C(9) and C1–C6 rings, respectively.
Experimental
The title compound was synthesized by adding 5-methoxy-salicylaldehyde (1 mmol) to a solution of 5-aminothiophene-2-thiol (1 mmol) in ethanol (30 ml). The mixture was refluxed with stirring for half an hour. The resultant solution was filtered. Yellow single crystals of the title compound suitable for X-ray structure determination were recrystallized from ethanol by slow evaporation of the solvents at room temperature over several days.
Refinement
All hydrogen atoms were positioned geometrically with C—H = 0.93-0.96 Å and included in a riding model approximation with Uiso (H) = 1.2 or 1.5 Ueq (C). A rotating group model was applied to the methyl group.
Figures
Fig. 1.
ORTEP plot of the title compound, showing 40% probability displacement ellipsoids. The intramolecular hydrogen bond is drawn as dashed line.
Fig. 2.
Packing diagram of the title compound viewed down the a-axis. Hydrogen bonds and S···S contacts are drawn as dashed lines.
Crystal data
| C10H9N3O2S2 | Z = 2 |
| Mr = 267.32 | F(000) = 276 |
| Triclinic, P1 | Dx = 1.521 Mg m−3 |
| Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
| a = 6.2266 (2) Å | Cell parameters from 2525 reflections |
| b = 8.0680 (2) Å | θ = 2.5–27.4° |
| c = 11.9695 (3) Å | µ = 0.45 mm−1 |
| α = 83.027 (2)° | T = 291 K |
| β = 77.993 (1)° | Block, yellow |
| γ = 87.898 (1)° | 0.11 × 0.08 × 0.05 mm |
| V = 583.76 (3) Å3 |
Data collection
| Bruker SMART APEXII CCD area-detector diffractometer | 2894 independent reflections |
| Radiation source: fine-focus sealed tube | 1990 reflections with I > 2σ(I) |
| graphite | Rint = 0.030 |
| φ and ω scans | θmax = 28.4°, θmin = 2.9° |
| Absorption correction: multi-scan (SADABS; Bruker, 2005) | h = −8→5 |
| Tmin = 0.952, Tmax = 0.978 | k = −10→10 |
| 10303 measured reflections | l = −15→15 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.040 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.102 | H-atom parameters constrained |
| S = 1.02 | w = 1/[σ2(Fo2) + (0.0525P)2] where P = (Fo2 + 2Fc2)/3 |
| 2894 reflections | (Δ/σ)max = 0.001 |
| 155 parameters | Δρmax = 0.30 e Å−3 |
| 0 restraints | Δρmin = −0.25 e Å−3 |
Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| S1 | 0.51725 (8) | 0.31804 (6) | 0.44207 (4) | 0.04448 (16) | |
| S2 | 0.89337 (8) | 0.25182 (7) | 0.56684 (5) | 0.05370 (18) | |
| O1 | 0.1438 (3) | 0.05675 (17) | 0.13460 (13) | 0.0639 (4) | |
| H1 | 0.2279 | 0.0646 | 0.1813 | 0.096* | |
| O2 | −0.3796 (3) | 0.62067 (18) | 0.12072 (13) | 0.0651 (4) | |
| N1 | 0.3359 (2) | 0.18322 (18) | 0.27908 (12) | 0.0401 (4) | |
| N2 | 0.6290 (2) | 0.05119 (18) | 0.34526 (12) | 0.0409 (4) | |
| N3 | 0.7659 (2) | 0.07198 (18) | 0.41793 (12) | 0.0402 (4) | |
| H3 | 0.8576 | 0.0018 | 0.4258 | 0.048* | |
| C1 | 0.0238 (3) | 0.2001 (2) | 0.13354 (15) | 0.0421 (4) | |
| C2 | −0.1342 (3) | 0.2186 (2) | 0.06674 (16) | 0.0457 (5) | |
| H2A | −0.1529 | 0.1347 | 0.0229 | 0.055* | |
| C3 | −0.2630 (3) | 0.3596 (2) | 0.06470 (15) | 0.0449 (5) | |
| H3A | −0.3691 | 0.3701 | 0.0198 | 0.054* | |
| C4 | −0.2373 (3) | 0.4871 (2) | 0.12883 (15) | 0.0418 (4) | |
| C5 | −0.0803 (3) | 0.4727 (2) | 0.19435 (14) | 0.0404 (4) | |
| H5 | −0.0620 | 0.5587 | 0.2366 | 0.049* | |
| C6 | 0.0536 (3) | 0.3286 (2) | 0.19832 (14) | 0.0352 (4) | |
| C7 | 0.2144 (3) | 0.3154 (2) | 0.26892 (14) | 0.0385 (4) | |
| H7A | 0.2320 | 0.4045 | 0.3086 | 0.046* | |
| C8 | 0.4892 (3) | 0.1745 (2) | 0.34711 (14) | 0.0364 (4) | |
| C9 | 0.7411 (3) | 0.2037 (2) | 0.47685 (15) | 0.0391 (4) | |
| C10 | −0.3578 (4) | 0.7562 (3) | 0.1826 (2) | 0.0667 (6) | |
| H10A | −0.3879 | 0.7189 | 0.2635 | 0.100* | |
| H10B | −0.4599 | 0.8434 | 0.1666 | 0.100* | |
| H10C | −0.2109 | 0.7979 | 0.1596 | 0.100* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| S1 | 0.0469 (3) | 0.0408 (3) | 0.0532 (3) | 0.0106 (2) | −0.0243 (2) | −0.0142 (2) |
| S2 | 0.0522 (3) | 0.0568 (3) | 0.0638 (3) | 0.0094 (2) | −0.0324 (3) | −0.0208 (3) |
| O1 | 0.0781 (10) | 0.0504 (9) | 0.0822 (10) | 0.0294 (8) | −0.0512 (8) | −0.0319 (8) |
| O2 | 0.0684 (10) | 0.0569 (9) | 0.0849 (11) | 0.0316 (7) | −0.0458 (8) | −0.0255 (8) |
| N1 | 0.0404 (8) | 0.0411 (9) | 0.0433 (8) | 0.0049 (7) | −0.0180 (7) | −0.0081 (7) |
| N2 | 0.0412 (8) | 0.0420 (9) | 0.0451 (8) | 0.0065 (7) | −0.0191 (7) | −0.0108 (7) |
| N3 | 0.0392 (8) | 0.0391 (8) | 0.0469 (8) | 0.0090 (6) | −0.0198 (7) | −0.0073 (7) |
| C1 | 0.0491 (11) | 0.0382 (10) | 0.0424 (10) | 0.0097 (8) | −0.0166 (8) | −0.0085 (8) |
| C2 | 0.0554 (12) | 0.0430 (11) | 0.0461 (10) | 0.0054 (9) | −0.0239 (9) | −0.0134 (9) |
| C3 | 0.0453 (10) | 0.0530 (12) | 0.0418 (10) | 0.0037 (9) | −0.0218 (8) | −0.0057 (9) |
| C4 | 0.0440 (10) | 0.0409 (10) | 0.0422 (10) | 0.0109 (8) | −0.0139 (8) | −0.0062 (8) |
| C5 | 0.0442 (10) | 0.0392 (10) | 0.0406 (9) | 0.0063 (8) | −0.0137 (8) | −0.0091 (8) |
| C6 | 0.0361 (9) | 0.0372 (9) | 0.0342 (8) | 0.0036 (7) | −0.0119 (7) | −0.0049 (7) |
| C7 | 0.0395 (10) | 0.0398 (10) | 0.0385 (9) | 0.0012 (8) | −0.0125 (8) | −0.0068 (8) |
| C8 | 0.0361 (9) | 0.0357 (9) | 0.0397 (9) | 0.0022 (8) | −0.0135 (8) | −0.0039 (8) |
| C9 | 0.0367 (9) | 0.0401 (10) | 0.0415 (9) | 0.0011 (8) | −0.0119 (8) | −0.0028 (8) |
| C10 | 0.0740 (15) | 0.0496 (13) | 0.0833 (16) | 0.0266 (11) | −0.0277 (13) | −0.0228 (12) |
Geometric parameters (Å, °)
| S1—C9 | 1.7383 (18) | C1—C6 | 1.407 (2) |
| S1—C8 | 1.7550 (17) | C2—C3 | 1.368 (3) |
| S2—C9 | 1.6624 (19) | C2—H2A | 0.9300 |
| O1—C1 | 1.354 (2) | C3—C4 | 1.389 (3) |
| O1—H1 | 0.8513 | C3—H3A | 0.9300 |
| O2—C4 | 1.377 (2) | C4—C5 | 1.368 (2) |
| O2—C10 | 1.418 (3) | C5—C6 | 1.408 (2) |
| N1—C7 | 1.293 (2) | C5—H5 | 0.9300 |
| N1—C8 | 1.373 (2) | C6—C7 | 1.432 (2) |
| N2—C8 | 1.297 (2) | C7—H7A | 0.9300 |
| N2—N3 | 1.366 (2) | C10—H10A | 0.9600 |
| N3—C9 | 1.332 (2) | C10—H10B | 0.9600 |
| N3—H3 | 0.8004 | C10—H10C | 0.9600 |
| C1—C2 | 1.385 (3) | ||
| C9—S1—C8 | 89.57 (8) | C4—C5—H5 | 119.8 |
| C1—O1—H1 | 105.8 | C6—C5—H5 | 119.8 |
| C4—O2—C10 | 117.48 (15) | C1—C6—C5 | 118.89 (16) |
| C7—N1—C8 | 120.57 (15) | C1—C6—C7 | 121.70 (16) |
| C8—N2—N3 | 109.05 (15) | C5—C6—C7 | 119.40 (16) |
| C9—N3—N2 | 120.21 (15) | N1—C7—C6 | 121.91 (17) |
| C9—N3—H3 | 121.3 | N1—C7—H7A | 119.0 |
| N2—N3—H3 | 118.5 | C6—C7—H7A | 119.0 |
| O1—C1—C2 | 118.24 (16) | N2—C8—N1 | 120.02 (16) |
| O1—C1—C6 | 122.23 (17) | N2—C8—S1 | 114.13 (13) |
| C2—C1—C6 | 119.53 (17) | N1—C8—S1 | 125.85 (13) |
| C3—C2—C1 | 120.48 (17) | N3—C9—S2 | 127.15 (14) |
| C3—C2—H2A | 119.8 | N3—C9—S1 | 107.00 (13) |
| C1—C2—H2A | 119.8 | S2—C9—S1 | 125.86 (11) |
| C2—C3—C4 | 120.82 (17) | O2—C10—H10A | 109.5 |
| C2—C3—H3A | 119.6 | O2—C10—H10B | 109.5 |
| C4—C3—H3A | 119.6 | H10A—C10—H10B | 109.5 |
| C5—C4—O2 | 125.16 (16) | O2—C10—H10C | 109.5 |
| C5—C4—C3 | 119.82 (17) | H10A—C10—H10C | 109.5 |
| O2—C4—C3 | 115.02 (16) | H10B—C10—H10C | 109.5 |
| C4—C5—C6 | 120.46 (17) | ||
| C8—N2—N3—C9 | 0.3 (2) | C4—C5—C6—C7 | −179.03 (16) |
| O1—C1—C2—C3 | 178.58 (18) | C8—N1—C7—C6 | 179.75 (15) |
| C6—C1—C2—C3 | −0.9 (3) | C1—C6—C7—N1 | −1.9 (3) |
| C1—C2—C3—C4 | 0.4 (3) | C5—C6—C7—N1 | 177.34 (16) |
| C10—O2—C4—C5 | 1.9 (3) | N3—N2—C8—N1 | 178.84 (14) |
| C10—O2—C4—C3 | −178.74 (19) | N3—N2—C8—S1 | −1.70 (19) |
| C2—C3—C4—C5 | 0.5 (3) | C7—N1—C8—N2 | −171.14 (17) |
| C2—C3—C4—O2 | −178.95 (18) | C7—N1—C8—S1 | 9.5 (2) |
| O2—C4—C5—C6 | 178.60 (17) | C9—S1—C8—N2 | 2.05 (14) |
| C3—C4—C5—C6 | −0.8 (3) | C9—S1—C8—N1 | −178.53 (16) |
| O1—C1—C6—C5 | −178.85 (17) | N2—N3—C9—S2 | −178.78 (13) |
| C2—C1—C6—C5 | 0.6 (3) | N2—N3—C9—S1 | 1.2 (2) |
| O1—C1—C6—C7 | 0.4 (3) | C8—S1—C9—N3 | −1.69 (13) |
| C2—C1—C6—C7 | 179.87 (17) | C8—S1—C9—S2 | 178.29 (13) |
| C4—C5—C6—C1 | 0.2 (3) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| O1—H1···N1 | 0.85 | 1.84 | 2.616 (2) | 151 |
| N3—H3···S2i | 0.80 | 2.53 | 3.3163 (15) | 169 |
| C2—H2A···O1ii | 0.93 | 2.57 | 3.481 (2) | 167 |
| C3—H3A···O2iii | 0.93 | 2.52 | 3.442 (3) | 172 |
Symmetry codes: (i) −x+2, −y, −z+1; (ii) −x, −y, −z; (iii) −x−1, −y+1, −z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: FF2041).
References
- Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.
- Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555–1573.
- Bondi, A. (1964). J. Phys. Chem. 68, 441–451.
- Bruker (2005). APEX2, SAINT and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
- Kumar, R., Giri S. & Nizamuddin (1988). J. Indian Chem. Soc. 65, 572–573.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
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- Zhang, Y.-X. (2003). Acta Cryst. E59, o581–o582.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811047362/ff2041sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811047362/ff2041Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811047362/ff2041Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


