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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Nov 19;67(Pt 12):o3343. doi: 10.1107/S1600536811047970

1-Methyl-3-trifluoro­methyl-5-[(3-chloro­phen­yl)sulfanyl]-1H-pyrazole-4-carbaldehyde O-(4-chloro­benzo­yl)oxime

Hong Dai a, Hai-Jun Zhang a, Lei Shi a, Kun-Peng Luo a, Yu-Jun Shi a,*
PMCID: PMC3238989  PMID: 22199838

Abstract

In the title compound, C19H12Cl2F3N3O2S, the 3-chloro­phenyl and 4-chloro­phenyl rings form dihedral angles 89.5 (2) and 11.4 (2)°, respectively, with the pyrazole ring. In the crystal, mol­ecules related by translation along the a axis are linked into chains via C—H⋯N hydrogen bonds.

Related literature

For the crystal structure of a related pyrazole oxime studied recently by our group, see: Dai et al. (2011).graphic file with name e-67-o3343-scheme1.jpg

Experimental

Crystal data

  • C19H12Cl2F3N3O2S

  • M r = 474.28

  • Monoclinic, Inline graphic

  • a = 8.1405 (16) Å

  • b = 18.680 (4) Å

  • c = 13.737 (3) Å

  • β = 96.10 (3)°

  • V = 2077.0 (7) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.46 mm−1

  • T = 113 K

  • 0.18 × 0.16 × 0.12 mm

Data collection

  • Rigaku Saturn CCD area detector diffractometer

  • Absorption correction: multi-scan (CrystalClear; Rigaku, 2008) T min = 0.922, T max = 0.947

  • 11802 measured reflections

  • 3654 independent reflections

  • 2794 reflections with I > 2σ(I)

  • R int = 0.039

Refinement

  • R[F 2 > 2σ(F 2)] = 0.049

  • wR(F 2) = 0.137

  • S = 1.10

  • 3654 reflections

  • 273 parameters

  • H-atom parameters constrained

  • Δρmax = 0.39 e Å−3

  • Δρmin = −0.38 e Å−3

Data collection: CrystalClear (Rigaku, 2008); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablock(s) r80421a, I. DOI: 10.1107/S1600536811047970/cv5193sup1.cif

e-67-o3343-sup1.cif (20.8KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811047970/cv5193Isup2.hkl

e-67-o3343-Isup2.hkl (179.2KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811047970/cv5193Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C5—H5⋯N2i 0.93 2.49 3.365 (4) 156

Symmetry code: (i) Inline graphic.

Acknowledgments

This work was supported by the National Natural Science Foundation of China (NNSFC) (grant No. 20772068), the Science and Technology Projects Fund of Nantong City (grant Nos. K2010016 and AS2010005), the Science Foundation of Nantong University (grant Nos. 09Z010 and 09C001) and the Scientific Research Foundation for Talent Introduction of Nantong University.

supplementary crystallographic information

Comment

As a continuation of our structural investigation of pyrazole oxime esters (Dai et al., 2011), we report here the structure of the title compound (I).

In (I) (Fig. 1), all bonds lengths and angles are comparable with those observed in the related compound (Dai et al., 2011). The mean planes p1 (C7/C8/C9/N2/N1), p2 (C1/C2/C3/C4/C5/C6) and p3 (C13/C14/C15/C16/C17/C18) form the following dihedral angles - p2/p1 89.5 (2)°, p3/p1 11.4 (3)°. The crystal packing shows weak intermolecular C—H···N interactions (Table 1), which link molecules into chains along the a axis.

Experimental

To a well stirred solution of 1-methyl-3-trifluoromethyl-5-(3-chlorophenthio)- 1H-pyrazole-4-carbaldehyde oxime (4 mmol), and pyridine (5 ml) in 40 ml of dichloromethane, was added dropwise 4-chlorobenzoyl chloride (5 mmol) at room temperature. The resulting solution was heated to reflux for 7 h and cooled to room temperature. The mixture was washed with saturated brine (3 * 30 ml) and dried over anhydrous sodium sulfate. The solvent was evaporated under reduced pressure, the residue was separated by column chromatography on silica gel with petroleum ether/ethyl acetate (12:1 v/v) as eluent, and then recrystallized from petroleum ether/ethyl acetate acetate to give a colourless crystal.

Refinement

All H atoms were placed in calculated positions, with C–H = 0.93 - 0.96 Å, and included in the final cycles of refinement using a riding model, with Uiso(H) = 1.2-1.5 Ueq(C).

Figures

Fig. 1.

Fig. 1.

The molecular structure of (I) showing the atomic numbering and 30% probabilty displacement ellipsoids.

Crystal data

C19H12Cl2F3N3O2S F(000) = 960
Mr = 474.28 Dx = 1.517 Mg m3
Monoclinic, P21/n Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2yn Cell parameters from 4368 reflections
a = 8.1405 (16) Å θ = 2.2–27.9°
b = 18.680 (4) Å µ = 0.46 mm1
c = 13.737 (3) Å T = 113 K
β = 96.10 (3)° Monoclinic, colourless
V = 2077.0 (7) Å3 0.18 × 0.16 × 0.12 mm
Z = 4

Data collection

Rigaku Saturn CCD area detector diffractometer 3654 independent reflections
Radiation source: rotating anode 2794 reflections with I > 2σ(I)
confocal Rint = 0.039
Detector resolution: 7.31 pixels mm-1 θmax = 25.0°, θmin = 2.2°
ω and φ scans h = −9→9
Absorption correction: multi-scan (CrystalClear; Rigaku, 2008) k = −22→22
Tmin = 0.922, Tmax = 0.947 l = −14→16
11802 measured reflections

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.049 H-atom parameters constrained
wR(F2) = 0.137 w = 1/[σ2(Fo2) + (0.0717P)2 + 0.2323P] where P = (Fo2 + 2Fc2)/3
S = 1.10 (Δ/σ)max = 0.001
3654 reflections Δρmax = 0.39 e Å3
273 parameters Δρmin = −0.38 e Å3
0 restraints Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methods Extinction coefficient: 0.020 (3)

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cl1 1.09484 (13) 0.84104 (6) 0.56388 (10) 0.1131 (4)
Cl2 1.29709 (11) 0.74602 (6) 1.34884 (7) 0.0961 (4)
S1 0.64859 (10) 1.00969 (4) 0.71200 (6) 0.0663 (3)
F1 0.1729 (2) 0.85215 (8) 0.92153 (14) 0.0775 (5)
F2 −0.0064 (2) 0.93357 (11) 0.88380 (14) 0.0867 (6)
F3 0.1826 (2) 0.94978 (10) 1.00144 (12) 0.0778 (5)
O1 0.6832 (2) 0.87708 (10) 1.04766 (12) 0.0532 (5)
O2 0.5304 (3) 0.84250 (12) 1.16752 (17) 0.0833 (7)
N1 0.3126 (3) 1.00802 (11) 0.71276 (16) 0.0566 (6)
N2 0.1875 (3) 0.98695 (11) 0.76284 (16) 0.0543 (6)
N3 0.5309 (3) 0.89838 (12) 0.99338 (15) 0.0538 (6)
C1 0.5668 (4) 0.88041 (15) 0.6144 (2) 0.0607 (7)
H1 0.4569 0.8886 0.6238 0.073*
C2 0.6110 (4) 0.81988 (17) 0.5655 (2) 0.0688 (8)
H2 0.5297 0.7873 0.5423 0.083*
C3 0.7709 (4) 0.80690 (17) 0.5504 (2) 0.0715 (8)
H3 0.7993 0.7657 0.5180 0.086*
C4 0.8894 (4) 0.85576 (16) 0.5841 (2) 0.0654 (8)
C5 0.8510 (3) 0.91618 (15) 0.63472 (18) 0.0584 (7)
H5 0.9336 0.9479 0.6587 0.070*
C6 0.6885 (3) 0.92892 (14) 0.64942 (16) 0.0508 (6)
C7 0.4631 (3) 0.98935 (13) 0.75808 (18) 0.0492 (6)
C8 0.4342 (3) 0.95423 (12) 0.84390 (16) 0.0434 (6)
C9 0.2602 (3) 0.95408 (12) 0.84192 (16) 0.0433 (6)
C10 0.1528 (3) 0.92283 (13) 0.91187 (19) 0.0518 (6)
C11 0.5643 (3) 0.92724 (12) 0.91488 (18) 0.0468 (6)
H11 0.6739 0.9313 0.9023 0.056*
C12 0.6607 (3) 0.84774 (13) 1.13649 (19) 0.0513 (6)
C13 0.8222 (3) 0.82499 (13) 1.18756 (18) 0.0473 (6)
C14 0.8200 (4) 0.77728 (14) 1.2655 (2) 0.0584 (7)
H14 0.7197 0.7611 1.2838 0.070*
C15 0.9663 (4) 0.75393 (14) 1.3154 (2) 0.0629 (8)
H15 0.9651 0.7220 1.3673 0.076*
C16 1.1137 (3) 0.77827 (15) 1.2879 (2) 0.0582 (7)
C17 1.1198 (3) 0.82612 (14) 1.2119 (2) 0.0555 (7)
H17 1.2206 0.8425 1.1946 0.067*
C18 0.9727 (3) 0.84924 (13) 1.16177 (19) 0.0517 (6)
H18 0.9749 0.8814 1.1102 0.062*
C19 0.2742 (5) 1.0461 (2) 0.6195 (2) 0.0884 (11)
H19A 0.2762 1.0130 0.5662 0.133*
H19B 0.3549 1.0830 0.6139 0.133*
H19C 0.1665 1.0673 0.6176 0.133*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cl1 0.0650 (6) 0.1302 (9) 0.1451 (10) 0.0138 (5) 0.0163 (6) −0.0332 (7)
Cl2 0.0651 (6) 0.1262 (8) 0.0921 (6) 0.0249 (5) −0.0154 (5) 0.0214 (5)
S1 0.0663 (5) 0.0631 (5) 0.0734 (5) −0.0207 (3) 0.0257 (4) −0.0077 (3)
F1 0.0803 (13) 0.0574 (10) 0.0992 (13) −0.0039 (8) 0.0302 (10) 0.0083 (8)
F2 0.0379 (9) 0.1262 (16) 0.0967 (13) 0.0030 (9) 0.0103 (9) 0.0184 (11)
F3 0.0809 (13) 0.0988 (13) 0.0579 (10) −0.0146 (10) 0.0263 (9) −0.0142 (9)
O1 0.0370 (10) 0.0717 (11) 0.0500 (9) 0.0044 (8) 0.0002 (8) 0.0088 (8)
O2 0.0458 (13) 0.1175 (18) 0.0892 (15) 0.0122 (11) 0.0195 (12) 0.0396 (13)
N1 0.0603 (15) 0.0591 (13) 0.0498 (12) 0.0021 (11) 0.0025 (11) 0.0099 (10)
N2 0.0485 (13) 0.0582 (12) 0.0553 (13) 0.0069 (10) 0.0016 (11) 0.0036 (10)
N3 0.0374 (12) 0.0684 (14) 0.0536 (12) 0.0051 (10) −0.0040 (10) 0.0042 (10)
C1 0.0530 (17) 0.0707 (17) 0.0595 (16) −0.0153 (13) 0.0109 (13) −0.0025 (13)
C2 0.072 (2) 0.0704 (18) 0.0629 (17) −0.0216 (16) 0.0033 (16) −0.0037 (14)
C3 0.080 (2) 0.0724 (19) 0.0627 (18) −0.0051 (17) 0.0113 (16) −0.0053 (15)
C4 0.0582 (19) 0.079 (2) 0.0587 (16) 0.0060 (15) 0.0049 (14) 0.0002 (14)
C5 0.0490 (17) 0.0761 (18) 0.0486 (14) −0.0088 (13) −0.0013 (12) 0.0014 (13)
C6 0.0522 (16) 0.0591 (15) 0.0413 (13) −0.0098 (12) 0.0052 (12) 0.0070 (11)
C7 0.0483 (16) 0.0499 (13) 0.0498 (14) −0.0037 (11) 0.0070 (12) 0.0012 (11)
C8 0.0411 (14) 0.0457 (12) 0.0432 (12) −0.0016 (10) 0.0038 (10) −0.0044 (10)
C9 0.0401 (14) 0.0469 (12) 0.0424 (12) 0.0035 (10) 0.0017 (10) −0.0022 (10)
C10 0.0383 (15) 0.0564 (15) 0.0611 (16) 0.0019 (11) 0.0067 (12) −0.0012 (12)
C11 0.0360 (13) 0.0532 (14) 0.0509 (14) −0.0006 (10) 0.0026 (11) −0.0028 (11)
C12 0.0453 (16) 0.0537 (14) 0.0549 (15) −0.0002 (11) 0.0050 (13) 0.0065 (11)
C13 0.0425 (15) 0.0488 (13) 0.0505 (13) 0.0023 (11) 0.0048 (11) 0.0007 (11)
C14 0.0511 (16) 0.0626 (16) 0.0623 (16) 0.0010 (13) 0.0105 (13) 0.0150 (13)
C15 0.062 (2) 0.0667 (17) 0.0598 (17) 0.0091 (14) 0.0049 (14) 0.0170 (13)
C16 0.0517 (17) 0.0651 (16) 0.0554 (15) 0.0111 (13) −0.0057 (13) 0.0009 (13)
C17 0.0418 (15) 0.0617 (16) 0.0627 (16) −0.0018 (12) 0.0036 (13) −0.0007 (13)
C18 0.0469 (16) 0.0531 (14) 0.0547 (14) −0.0015 (11) 0.0032 (12) 0.0072 (11)
C19 0.103 (3) 0.096 (2) 0.0642 (19) 0.011 (2) 0.0001 (18) 0.0349 (18)

Geometric parameters (Å, °)

Cl1—C4 1.746 (3) C4—C5 1.379 (4)
Cl2—C16 1.740 (3) C5—C6 1.380 (4)
S1—C7 1.740 (3) C5—H5 0.9300
S1—C6 1.783 (3) C7—C8 1.391 (3)
F1—C10 1.335 (3) C8—C9 1.414 (3)
F2—C10 1.327 (3) C8—C11 1.451 (3)
F3—C10 1.328 (3) C9—C10 1.486 (4)
O1—C12 1.368 (3) C11—H11 0.9300
O1—N3 1.434 (2) C12—C13 1.485 (3)
O2—C12 1.189 (3) C13—C18 1.387 (4)
N1—N2 1.347 (3) C13—C14 1.394 (4)
N1—C7 1.359 (3) C14—C15 1.381 (4)
N1—C19 1.469 (3) C14—H14 0.9300
N2—C9 1.331 (3) C15—C16 1.373 (4)
N3—C11 1.261 (3) C15—H15 0.9300
C1—C2 1.382 (4) C16—C17 1.380 (4)
C1—C6 1.390 (4) C17—C18 1.385 (4)
C1—H1 0.9300 C17—H17 0.9300
C2—C3 1.361 (4) C18—H18 0.9300
C2—H2 0.9300 C19—H19A 0.9600
C3—C4 1.372 (4) C19—H19B 0.9600
C3—H3 0.9300 C19—H19C 0.9600
C7—S1—C6 101.54 (12) F2—C10—F1 106.5 (2)
C12—O1—N3 112.63 (19) F3—C10—F1 105.9 (2)
N2—N1—C7 112.6 (2) F2—C10—C9 112.1 (2)
N2—N1—C19 119.0 (3) F3—C10—C9 112.8 (2)
C7—N1—C19 128.4 (3) F1—C10—C9 112.2 (2)
C9—N2—N1 104.9 (2) N3—C11—C8 121.0 (2)
C11—N3—O1 108.1 (2) N3—C11—H11 119.5
C2—C1—C6 119.3 (3) C8—C11—H11 119.5
C2—C1—H1 120.4 O2—C12—O1 124.2 (2)
C6—C1—H1 120.4 O2—C12—C13 125.9 (2)
C3—C2—C1 121.5 (3) O1—C12—C13 109.9 (2)
C3—C2—H2 119.3 C18—C13—C14 119.2 (2)
C1—C2—H2 119.3 C18—C13—C12 123.2 (2)
C2—C3—C4 118.7 (3) C14—C13—C12 117.6 (2)
C2—C3—H3 120.7 C15—C14—C13 120.2 (3)
C4—C3—H3 120.7 C15—C14—H14 119.9
C3—C4—C5 121.7 (3) C13—C14—H14 119.9
C3—C4—Cl1 119.5 (3) C16—C15—C14 119.4 (3)
C5—C4—Cl1 118.8 (2) C16—C15—H15 120.3
C4—C5—C6 119.1 (3) C14—C15—H15 120.3
C4—C5—H5 120.4 C15—C16—C17 121.7 (2)
C6—C5—H5 120.4 C15—C16—Cl2 118.9 (2)
C5—C6—C1 119.7 (3) C17—C16—Cl2 119.4 (2)
C5—C6—S1 116.3 (2) C16—C17—C18 118.6 (3)
C1—C6—S1 124.0 (2) C16—C17—H17 120.7
N1—C7—C8 106.5 (2) C18—C17—H17 120.7
N1—C7—S1 123.51 (19) C17—C18—C13 120.8 (2)
C8—C7—S1 130.0 (2) C17—C18—H18 119.6
C7—C8—C9 104.1 (2) C13—C18—H18 119.6
C7—C8—C11 123.8 (2) N1—C19—H19A 109.5
C9—C8—C11 132.1 (2) N1—C19—H19B 109.5
N2—C9—C8 111.9 (2) H19A—C19—H19B 109.5
N2—C9—C10 117.9 (2) N1—C19—H19C 109.5
C8—C9—C10 130.2 (2) H19A—C19—H19C 109.5
F2—C10—F3 106.8 (2) H19B—C19—H19C 109.5
C7—N1—N2—C9 0.0 (3) C11—C8—C9—N2 178.2 (2)
C19—N1—N2—C9 179.5 (2) C7—C8—C9—C10 178.2 (2)
C12—O1—N3—C11 177.4 (2) C11—C8—C9—C10 −2.8 (4)
C6—C1—C2—C3 −0.3 (4) N2—C9—C10—F2 −0.6 (3)
C1—C2—C3—C4 −0.7 (5) C8—C9—C10—F2 −179.5 (2)
C2—C3—C4—C5 1.8 (5) N2—C9—C10—F3 −121.2 (2)
C2—C3—C4—Cl1 −179.0 (2) C8—C9—C10—F3 59.9 (3)
C3—C4—C5—C6 −2.0 (4) N2—C9—C10—F1 119.2 (2)
Cl1—C4—C5—C6 178.8 (2) C8—C9—C10—F1 −59.7 (3)
C4—C5—C6—C1 0.9 (4) O1—N3—C11—C8 179.75 (19)
C4—C5—C6—S1 −178.0 (2) C7—C8—C11—N3 177.1 (2)
C2—C1—C6—C5 0.2 (4) C9—C8—C11—N3 −1.7 (4)
C2—C1—C6—S1 179.0 (2) N3—O1—C12—O2 −2.5 (4)
C7—S1—C6—C5 −157.1 (2) N3—O1—C12—C13 178.37 (19)
C7—S1—C6—C1 24.0 (2) O2—C12—C13—C18 −161.7 (3)
N2—N1—C7—C8 −0.5 (3) O1—C12—C13—C18 17.4 (3)
C19—N1—C7—C8 −179.9 (3) O2—C12—C13—C14 17.8 (4)
N2—N1—C7—S1 −179.46 (17) O1—C12—C13—C14 −163.0 (2)
C19—N1—C7—S1 1.1 (4) C18—C13—C14—C15 −0.8 (4)
C6—S1—C7—N1 −96.1 (2) C12—C13—C14—C15 179.7 (3)
C6—S1—C7—C8 85.2 (2) C13—C14—C15—C16 0.2 (4)
N1—C7—C8—C9 0.7 (2) C14—C15—C16—C17 0.5 (4)
S1—C7—C8—C9 179.61 (19) C14—C15—C16—Cl2 −177.8 (2)
N1—C7—C8—C11 −178.3 (2) C15—C16—C17—C18 −0.7 (4)
S1—C7—C8—C11 0.6 (4) Cl2—C16—C17—C18 177.6 (2)
N1—N2—C9—C8 0.5 (3) C16—C17—C18—C13 0.2 (4)
N1—N2—C9—C10 −178.6 (2) C14—C13—C18—C17 0.6 (4)
C7—C8—C9—N2 −0.8 (3) C12—C13—C18—C17 −179.9 (2)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C5—H5···N2i 0.93 2.49 3.365 (4) 156

Symmetry codes: (i) x+1, y, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: CV5193).

References

  1. Dai, H., Shen, Y.-F., Chen, J., Chen, H.-L. & Shen, Y.-J. (2011). Acta Cryst. E67, o726. [DOI] [PMC free article] [PubMed]
  2. Rigaku (2008). CrystalClear Rigaku Corporation, Toyko, Japan.
  3. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) r80421a, I. DOI: 10.1107/S1600536811047970/cv5193sup1.cif

e-67-o3343-sup1.cif (20.8KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811047970/cv5193Isup2.hkl

e-67-o3343-Isup2.hkl (179.2KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811047970/cv5193Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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