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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Nov 23;67(Pt 12):o3402. doi: 10.1107/S1600536811047702

5-Bromo-N 3-[(E)-(6-bromo­pyridin-2-yl)methyl­idene]pyridine-3,4-diamine

Mingjian Cai a,*
PMCID: PMC3239041  PMID: 22199889

Abstract

The title compound, C11H8Br2N4, is a Schiff base obtained from 6-bromo­picolinaldehyde and 5-bromo­pyridine-3,4-diamine. The mol­ecule has an E configuration about the C=N bond and the dihedral angle between the two pyridine rings is 14.02 (1)°. The observed conformation is stabilised by an intramolecular N—H⋯N hydrogen bond. In the crystal, mol­ecules are stacked along the b axis and are linked through N—H⋯N hydrogen bonds into chains along the c axis.

Related literature

For the use of Schiff bases in coordination, see: Burkhardt & Plass (2008); Keypour et al. (2011); Tarafder et al. (2002). For their properties, see: Kocyigit et al. (2010).graphic file with name e-67-o3402-scheme1.jpg

Experimental

Crystal data

  • C11H8Br2N4

  • M r = 356.03

  • Monoclinic, Inline graphic

  • a = 24.941 (2) Å

  • b = 3.8306 (6) Å

  • c = 15.0868 (14) Å

  • β = 126.116 (14)°

  • V = 1164.4 (2) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 6.94 mm−1

  • T = 113 K

  • 0.20 × 0.18 × 0.12 mm

Data collection

  • Rigaku Saturn 724CCD diffractometer

  • Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2002) T min = 0.337, T max = 0.490

  • 5047 measured reflections

  • 2282 independent reflections

  • 2070 reflections with I > 2σ(I)

  • R int = 0.046

Refinement

  • R[F 2 > 2σ(F 2)] = 0.029

  • wR(F 2) = 0.055

  • S = 0.89

  • 2282 reflections

  • 118 parameters

  • 38 restraints

  • H-atom parameters constrained

  • Δρmax = 0.45 e Å−3

  • Δρmin = −0.63 e Å−3

  • Absolute structure: Flack (1983), 1093 Friedel pairs

  • Flack parameter: 0.002 (12)

Data collection: CrystalClear (Rigaku/MSC, 2002); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Crystal Impact, 2009); software used to prepare material for publication: CrystalStructure (Rigaku/MSC, 2006).

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811047702/ld2030sup1.cif

e-67-o3402-sup1.cif (15.7KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811047702/ld2030Isup2.hkl

e-67-o3402-Isup2.hkl (112.2KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811047702/ld2030Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N4—H4B⋯N2 0.88 2.33 2.686 (6) 104
N4—H4A⋯N1i 0.88 2.44 3.043 (5) 126

Symmetry code: (i) Inline graphic.

Acknowledgments

The authors thank Professor Wang, Department of Chemistry, Nankai University, for providing experimental facilities.

supplementary crystallographic information

Comment

Schiff bases have played an important role in the development of coordination chemistry as they readily form stable complexes with most of the transition metals (Burkhardt & Plass, 2008; Keypour, et al., 2011; Tarafder, et al., 2002). They possess important properties, such as an ability to reversibly bind oxygen, catalytic activity in hydrogenation of olefins, transfer of an amino group, photochromic properties and complexing ability towards toxic metals (Kocyigit et al., 2010). In this paper, a new Schiff base compound derived from condensation of 6-bromopicolinaldehyde with 5-bromopyridine-3,4-diamine is reported. The molecule of the title compound has an E configuration about the C6=N2 bond (Fig.1). The dihedral angle between the two pyridyl rings is 14.02 (1)°. An intramolecular N—H···N hydrogen bond forms five-membered ring. The five-membered ring and two pyridyl ring form dihedral angles of 3.60 (1)° and 4.02 (1)°. In the crystal, molecules are stacked along y axis and are linked through intermolecular N—H···N hydrogen bonds into chains propagating along z axis (Fig.2).

Experimental

A solution of 6-bromopicolinaldehyde and 5-bromopyridine-3,4-diamine in methanol was refluxed for 30 min, and then the crude product was filtered and recrystallized from methanol to yield yellowish title compound. A small amount of the product was dissolved in methanol and the solution was kept for 5 days at ambient temperature to produce yellowish acicular crystals on slow evaporation of the solvent.

Refinement

Amino H atoms were located in a difference fourier map and were put in ideal positions with N—H=0.88 Å. The remaining H atoms were positioned geometrically, with C—H=0.95 Å, and constrained to ride on their parent atoms, with Uiso(H)=1.2Ueq(C/N).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound, showing 30% probability displacement ellipsoids and the atom-numbering scheme.

Fig. 2.

Fig. 2.

Molecular packing of the title compound with hydrogen bonding shown as dashed lines

Crystal data

C11H8Br2N4 F(000) = 688
Mr = 356.03 Dx = 2.031 Mg m3
Monoclinic, Cc Mo Kα radiation, λ = 0.71073 Å
a = 24.941 (2) Å Cell parameters from 2086 reflections
b = 3.8306 (6) Å θ = 1.7–27.9°
c = 15.0868 (14) Å µ = 6.94 mm1
β = 126.116 (14)° T = 113 K
V = 1164.4 (2) Å3 Prism, colorless
Z = 4 0.20 × 0.18 × 0.12 mm

Data collection

Rigaku Saturn 724CCD diffractometer 2282 independent reflections
Radiation source: rotating anode 2070 reflections with I > 2σ(I)
multilayer Rint = 0.046
Detector resolution: 14.22 pixels mm-1 θmax = 26.4°, θmin = 2.0°
ω scans h = −30→29
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2002) k = −4→4
Tmin = 0.337, Tmax = 0.490 l = −18→18
5047 measured reflections

Refinement

Refinement on F2 Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: full H-atom parameters constrained
R[F2 > 2σ(F2)] = 0.029 w = 1/[σ2(Fo2) + (0.P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.055 (Δ/σ)max < 0.001
S = 0.89 Δρmax = 0.45 e Å3
2282 reflections Δρmin = −0.63 e Å3
118 parameters Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
38 restraints Extinction coefficient: 0.00177 (14)
Primary atom site location: structure-invariant direct methods Absolute structure: Flack (1983), 1093 Friedel pairs
Secondary atom site location: difference Fourier map Flack parameter: 0.002 (12)

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt)etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Br1 −0.32411 (2) −1.16292 (13) −0.65216 (3) 0.01513 (13)
Br2 −0.60799 (2) 0.03838 (13) −0.34064 (3) 0.01849 (14)
C6 −0.4590 (3) −0.6690 (12) −0.5248 (4) 0.0102 (6)
H6 −0.4959 −0.7657 −0.5913 0.012*
C1 −0.3284 (3) −0.9595 (12) −0.5398 (4) 0.0102 (7)
C9 −0.5986 (3) −0.1427 (11) −0.4469 (4) 0.0102 (6)
N2 −0.4692 (2) −0.4839 (10) −0.4673 (3) 0.0102 (6)
C4 −0.3354 (3) −0.6323 (13) −0.3902 (4) 0.0117 (12)
H4 −0.3393 −0.5114 −0.3393 0.014*
C5 −0.3928 (3) −0.7397 (13) −0.4927 (4) 0.0102 (7)
C8 −0.5367 (3) −0.2611 (13) −0.4152 (4) 0.0102 (6)
N1 −0.3883 (2) −0.9064 (10) −0.5679 (3) 0.0102 (10)
N3 −0.6504 (2) −0.2897 (11) −0.6358 (3) 0.0160 (11)
C2 −0.2699 (3) −0.8765 (12) −0.4417 (4) 0.0102 (7)
H2 −0.2282 −0.9341 −0.4266 0.012*
C10 −0.6531 (3) −0.1634 (12) −0.5552 (4) 0.0102 (6)
H10 −0.6947 −0.0846 −0.5738 0.012*
N4 −0.4818 (2) −0.2585 (10) −0.3118 (3) 0.0156 (10)
H4A −0.4834 −0.1785 −0.2587 0.019*
H4B −0.4441 −0.3367 −0.2969 0.019*
C3 −0.2743 (3) −0.7040 (13) −0.3652 (4) 0.0136 (12)
H3 −0.2353 −0.6368 −0.2963 0.016*
C11 −0.5907 (3) −0.3985 (12) −0.6050 (4) 0.0127 (13)
H11 −0.5878 −0.4893 −0.6606 0.015*
C7 −0.5329 (3) −0.3906 (12) −0.4994 (4) 0.0102 (6)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Br1 0.0168 (3) 0.0139 (3) 0.0191 (3) 0.0022 (2) 0.0129 (2) −0.0024 (2)
Br2 0.0207 (3) 0.0179 (3) 0.0219 (3) 0.0026 (3) 0.0153 (3) −0.0004 (3)
C6 0.0118 (15) 0.0111 (14) 0.0086 (13) −0.0005 (15) 0.0064 (12) 0.0002 (13)
C1 0.0100 (17) 0.0077 (15) 0.0135 (17) −0.0007 (12) 0.0073 (14) 0.0026 (12)
C9 0.0122 (15) 0.0052 (13) 0.0154 (14) −0.0006 (10) 0.0094 (12) 0.0015 (10)
N2 0.0118 (15) 0.0111 (14) 0.0086 (13) −0.0005 (15) 0.0064 (12) 0.0002 (13)
C4 0.018 (3) 0.010 (3) 0.010 (3) 0.001 (2) 0.010 (3) 0.002 (2)
C5 0.0100 (17) 0.0077 (15) 0.0135 (17) −0.0007 (12) 0.0073 (14) 0.0026 (12)
C8 0.0122 (15) 0.0052 (13) 0.0154 (14) −0.0006 (10) 0.0094 (12) 0.0015 (10)
N1 0.013 (3) 0.008 (2) 0.008 (2) −0.0011 (18) 0.006 (2) 0.0017 (17)
N3 0.009 (3) 0.023 (3) 0.012 (2) 0.003 (2) 0.004 (2) 0.0014 (19)
C2 0.0100 (17) 0.0077 (15) 0.0135 (17) −0.0007 (12) 0.0073 (14) 0.0026 (12)
C10 0.0122 (15) 0.0052 (13) 0.0154 (14) −0.0006 (10) 0.0094 (12) 0.0015 (10)
N4 0.005 (2) 0.031 (3) 0.010 (2) 0.0035 (19) 0.004 (2) −0.0036 (18)
C3 0.008 (3) 0.017 (3) 0.008 (3) −0.003 (2) 0.000 (2) 0.004 (2)
C11 0.016 (3) 0.011 (3) 0.012 (3) 0.002 (2) 0.009 (3) 0.000 (2)
C7 0.0122 (15) 0.0052 (13) 0.0154 (14) −0.0006 (10) 0.0094 (12) 0.0015 (10)

Geometric parameters (Å, °)

Br1—C1 1.925 (5) C5—N1 1.363 (6)
Br2—C9 1.884 (5) C8—N4 1.337 (6)
C6—N2 1.256 (5) C8—C7 1.418 (7)
C6—C5 1.447 (7) N3—C11 1.339 (6)
C6—H6 0.9500 N3—C10 1.347 (5)
C1—N1 1.305 (7) C2—C3 1.389 (7)
C1—C2 1.370 (7) C2—H2 0.9500
C9—C10 1.380 (6) C10—H10 0.9500
C9—C8 1.397 (7) N4—H4A 0.8800
N2—C7 1.407 (7) N4—H4B 0.8800
C4—C3 1.363 (7) C3—H3 0.9500
C4—C5 1.414 (7) C11—C7 1.382 (7)
C4—H4 0.9500 C11—H11 0.9500
N2—C6—C5 122.0 (4) C11—N3—C10 115.9 (5)
N2—C6—H6 119.0 C1—C2—C3 116.9 (5)
C5—C6—H6 119.0 C1—C2—H2 121.6
N1—C1—C2 127.0 (5) C3—C2—H2 121.6
N1—C1—Br1 115.1 (4) N3—C10—C9 123.4 (5)
C2—C1—Br1 117.9 (4) N3—C10—H10 118.3
C10—C9—C8 120.4 (5) C9—C10—H10 118.3
C10—C9—Br2 119.9 (4) C8—N4—H4A 120.0
C8—C9—Br2 119.6 (4) C8—N4—H4B 120.0
C6—N2—C7 123.5 (4) H4A—N4—H4B 120.0
C3—C4—C5 119.4 (5) C4—C3—C2 119.2 (5)
C3—C4—H4 120.3 C4—C3—H3 120.4
C5—C4—H4 120.3 C2—C3—H3 120.4
N1—C5—C4 121.3 (5) N3—C11—C7 125.8 (5)
N1—C5—C6 116.6 (5) N3—C11—H11 117.1
C4—C5—C6 122.1 (5) C7—C11—H11 117.1
N4—C8—C9 124.2 (5) C11—C7—N2 126.2 (5)
N4—C8—C7 119.0 (5) C11—C7—C8 117.7 (5)
C9—C8—C7 116.8 (5) N2—C7—C8 116.0 (5)
C1—N1—C5 116.2 (4)
C5—C6—N2—C7 175.6 (5) C11—N3—C10—C9 0.3 (7)
C3—C4—C5—N1 −1.5 (7) C8—C9—C10—N3 −1.1 (7)
C3—C4—C5—C6 −179.4 (4) Br2—C9—C10—N3 −180.0 (4)
N2—C6—C5—N1 −172.0 (4) C5—C4—C3—C2 1.0 (7)
N2—C6—C5—C4 6.0 (7) C1—C2—C3—C4 1.0 (7)
C10—C9—C8—N4 −178.3 (4) C10—N3—C11—C7 −0.2 (8)
Br2—C9—C8—N4 0.6 (7) N3—C11—C7—N2 −175.7 (5)
C10—C9—C8—C7 1.8 (7) N3—C11—C7—C8 1.0 (8)
Br2—C9—C8—C7 −179.3 (3) C6—N2—C7—C11 −19.0 (8)
C2—C1—N1—C5 2.4 (7) C6—N2—C7—C8 164.2 (4)
Br1—C1—N1—C5 −175.4 (3) N4—C8—C7—C11 178.4 (4)
C4—C5—N1—C1 −0.1 (7) C9—C8—C7—C11 −1.7 (7)
C6—C5—N1—C1 177.9 (4) N4—C8—C7—N2 −4.5 (7)
N1—C1—C2—C3 −2.9 (7) C9—C8—C7—N2 175.4 (4)
Br1—C1—C2—C3 174.9 (3)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N4—H4B···N2 0.88 2.33 2.686 (6) 104.
N4—H4A···N1i 0.88 2.44 3.043 (5) 126.

Symmetry codes: (i) x, −y−1, z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LD2030).

References

  1. Burkhardt, A. & Plass, W. (2008). Inorg. Chem. Commun. 11, 303–306.
  2. Crystal Impact (2009). DIAMOND Crystal Impact GbR, Bonn, Germany.
  3. Flack, H. D. (1983). Acta Cryst. A39, 876–881.
  4. Keypour, H., Arzhangi, P., Rahpeyma, N., Rezaeivala, M., Elerman, Y. & Khavasi, H. R. (2011). Inorg. Chim. Acta, 367, 9–14.
  5. Kocyigit, O., Kursunlu, A. N. & Guler, E. (2010). J. Hazard. Mater. 183, 334–340. [DOI] [PubMed]
  6. Rigaku/MSC (2002). CrystalClear Rigaku/MSC, The Woodlands, Texas, USA.
  7. Rigaku/MSC (2006). CrystalStructure Rigaku/MSC, The Woodlands, Texas, USA.
  8. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  9. Tarafder, M. T. H., Khoo, T. J., Crouse, K. A., Ali, A. M., Yamin, B. M. & Fun, H. K. (2002). Polyhedron, 21, 2691–2698.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811047702/ld2030sup1.cif

e-67-o3402-sup1.cif (15.7KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811047702/ld2030Isup2.hkl

e-67-o3402-Isup2.hkl (112.2KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811047702/ld2030Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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