Abstract
In the title molecule, C13H16O4, the pyran ring is in a half-chair conformation. There is an intramolecular hydrogen bond involving the ketone O atom and an H atom of a phenol group which forms an S(6) ring. The ketone O atom is also involved in an intermolecular hydrogen bond with a different phenolic H atom of a symmetry-related molecule, forming C(6) chains along the c-axis direction.
Related literature
For applications of the title compound, see: Kraus et al. (2011 ▶); Basabe et al. (2010 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For a related structure, see: Chakkaravarthi et al. (2007 ▶).
Experimental
Crystal data
C13H16O4
M r = 236.26
Tetragonal,
a = 10.5677 (2) Å
c = 21.4244 (5) Å
V = 2392.6 (1) Å3
Z = 8
Mo Kα radiation
μ = 0.10 mm−1
T = 298 K
0.6 × 0.4 × 0.4 mm
Data collection
Oxford Diffraction Xcalibur 2 CCD diffractometer
Absorption correction: multi-scan (SORTAV; Blessing, 1995 ▶) T min = 0.955, T max = 0.962
26011 measured reflections
2366 independent reflections
2046 reflections with I > 2σ(I)
R int = 0.047
Refinement
R[F 2 > 2σ(F 2)] = 0.032
wR(F 2) = 0.091
S = 1.08
2366 reflections
166 parameters
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.12 e Å−3
Δρmin = −0.11 e Å−3
Absolute structure: Flack (1983 ▶), 931 Friedel pairs
Flack parameter: 0.7 (11)
Data collection: CrysAlis CCD (Oxford Diffraction, 2008 ▶); cell refinement: CrysAlis CCD; data reduction: CrysAlis RED (Oxford Diffraction, 2008 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: WinGX (Farrugia, 1999 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶).
Supplementary Material
Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536811047982/lh5372sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811047982/lh5372Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811047982/lh5372Isup3.mol
Supplementary material file. DOI: 10.1107/S1600536811047982/lh5372Isup4.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| O2—H102⋯O4i | 0.97 (2) | 1.77 (2) | 2.737 (2) | 179 (1) |
| O3—H103⋯O4 | 0.86 (2) | 1.71 (2) | 2.501 (2) | 151 (2) |
Symmetry code: (i)
.
Acknowledgments
We would like to thank the University of KwaZulu-Natal for their facilities and Kirsty Stewart for the data collection. We also wish to acknowledge the National Research Foundation of South Africa for their financial support.
supplementary crystallographic information
Comment
The title compound was synthesized as an intermediate in the preparation of flavonoids or other phenolic derivatives and an intermediate for an anti-HIV chromanone (Kraus et al., 2011). It has also been obtained as a side product in the preparation of prenylated flavonoids with antitumour activity (Basabe et al., 2010). The molecular structure of the title compound is shown in Fig. 1. The pyran ring is in a half-chair conformation. There are two types of hydrogen bonds, one intramolecular and one intermolecular. The intramolecular O3—H103···O4 hydrogen bond forms an S(6) ring motif (Bernstein et al., 1995). This hydrogen bond motif is common to molecules which contain derivatized (2-hydroxyphenyl)ethanone structures (Chakkaravarthi et al., 2007). In addition to the intramolecular hydrogen bonding, there is an intermolecular hydrogen bond between the phenolic group and the ketone O atom of an adjacent molecule. This O2—H102···O4i (see Table 1 for symmetry code) hydrogen bond links the molecules to form infinite one-dimensional C(6) chains parallel to the c axis (base vector [0 0 1]). The same ketone oxygen atom therefore accepts two hydrogen bonds, one intermolecular and one intramolecular. The hydrogen bond lengths and bond angles are summarized in Table 1. Fig.2 depicts both the intermolecular and intramolecular hydrogen bonds. The length of intermolecular hydrogen bond is 0.303 Å shorter than the sum of the van der Waals radii. Although the length of hydrogen bonds does not necessarily correlate linearly with bond strength, due to packing constraints in the lattice, it is probable that this very short bond is moderate to strong. This is especially likely considering that the bond angle very closely approaches ideality.
Experimental
To a solution of 6-hydroxy-2,4-dimethoxymethyloxy-3-prenylacetophenone (80 mg, 0.25 mmol) in methanol (20 ml) was added 1.0 M HCl (6 ml). The reaction mixture was refluxed for 1 h before cooling. The solvent was evaporated and the residue purified by column chromatography using hexane:ethyl acetate: 2:1 to afford 1-(5,7-dihydroxy-2,2-dimethylchroman-6-yl)ethanone as yellow crystals (10 mg, 17%): mp 501–502 K;
Refinement
The positions of all hydrogen atoms bonded to C atoms were calculated using the standard riding model of SHELXL97 (Sheldrick, 2008) with C—H(aromatic) and C—H (methylene) distances of 0.93 Å and Uiso = 1.2 Ueq, and C—H(methyl) distances of 0.96 Å and Uiso = 1.5Ueq. The phenolic hydrogen atoms were located in the difference Fourier map and allowed to refine isotropically.
Figures
Fig. 1.
The molecular structure of the title compound with 50% probability ellipsoids. Hydrogen atoms have been rendered as spheres of arbitrary radius.
Fig. 2.
Part of a hydrogen bonded (dashed lines) chain along [001].
Crystal data
| C13H16O4 | Dx = 1.312 Mg m−3 |
| Mr = 236.26 | Mo Kα radiation, λ = 0.71073 Å |
| Tetragonal, P41212 | Cell parameters from 2366 reflections |
| Hall symbol: P 4abw 2nw | θ = 2.9–26.0° |
| a = 10.5677 (2) Å | µ = 0.10 mm−1 |
| c = 21.4244 (5) Å | T = 298 K |
| V = 2392.6 (1) Å3 | Needle, colourless |
| Z = 8 | 0.6 × 0.4 × 0.4 mm |
| F(000) = 1008 |
Data collection
| Oxford Diffraction Xcalibur 2 CCD diffractometer | 2366 independent reflections |
| Radiation source: fine-focus sealed tube | 2046 reflections with I > 2σ(I) |
| graphite | Rint = 0.047 |
| Detector resolution: 8.4190 pixels mm-1 | θmax = 26.0°, θmin = 2.9° |
| ω scans at fixed θ angles | h = −13→13 |
| Absorption correction: multi-scan (SORTAV; Blessing, 1995) | k = −13→13 |
| Tmin = 0.955, Tmax = 0.962 | l = −26→26 |
| 26011 measured reflections |
Refinement
| Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| R[F2 > 2σ(F2)] = 0.032 | w = 1/[σ2(Fo2) + (0.0593P)2 + 0.0612P] where P = (Fo2 + 2Fc2)/3 |
| wR(F2) = 0.091 | (Δ/σ)max = 0.001 |
| S = 1.08 | Δρmax = 0.12 e Å−3 |
| 2366 reflections | Δρmin = −0.11 e Å−3 |
| 166 parameters | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| 0 restraints | Extinction coefficient: 0.0094 (18) |
| Primary atom site location: structure-invariant direct methods | Absolute structure: Flack (1983), 931 Friedel pairs |
| Secondary atom site location: difference Fourier map | Flack parameter: 0.7 (11) |
Special details
| Experimental. 1H NMR (400 MHz, CD3OD) 1.31 (2x 3H, s, C(CH3)2), 1.78 (2H, t, J = 6.7 Hz, CH2), 2.55 (2H, t, J = 6.7 Hz, CH2), 2.62 (3H, s, COCH3), 5.77 (1H, s, ArH); 13C NMR 15.6 (C(CH3)2), 25.6 (2 × CH2), 31.3 (C(CH3)2), 31.8 (COCH3), 75.3 (C(CH3)2, 94.5 (C-5), 99.9 (C-1), 104.2 (C-3), 160.0, 160.9, 163.3 (C-2,4,6), 203.4 (COCH3); ESITOFMS, m/z 259.0945 [M+Na]+ (calc. for C13H16NaO4 259.0946); IR (KBr) υ 2961 2918 2872 1654 1611 1433 1159 cm-1. |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| H102 | 1.1657 (18) | 0.6538 (18) | 0.1786 (9) | 0.064 (5)* | |
| H103 | 0.794 (2) | 0.877 (2) | 0.3250 (10) | 0.075 (7)* | |
| O1 | 0.94129 (10) | 0.98280 (11) | 0.09038 (5) | 0.0540 (3) | |
| O2 | 1.11831 (12) | 0.66838 (11) | 0.21655 (5) | 0.0563 (3) | |
| C9 | 0.93675 (14) | 0.92341 (14) | 0.14598 (6) | 0.0410 (3) | |
| O3 | 0.77624 (12) | 0.92148 (12) | 0.29235 (6) | 0.0619 (3) | |
| C7 | 1.03346 (13) | 0.76254 (13) | 0.20884 (7) | 0.0390 (3) | |
| O4 | 0.87361 (12) | 0.75511 (12) | 0.36008 (5) | 0.0611 (4) | |
| C8 | 1.02635 (13) | 0.82754 (14) | 0.15389 (7) | 0.0403 (3) | |
| H8 | 1.0815 | 0.8079 | 0.1215 | 0.048* | |
| C4 | 0.85141 (14) | 0.95417 (14) | 0.19248 (7) | 0.0452 (3) | |
| C6 | 0.95010 (13) | 0.79073 (13) | 0.25928 (6) | 0.0397 (3) | |
| C12 | 0.95429 (15) | 0.72843 (14) | 0.31906 (7) | 0.0468 (4) | |
| C5 | 0.86024 (13) | 0.88832 (13) | 0.24823 (7) | 0.0427 (3) | |
| C1 | 0.83994 (17) | 1.07167 (15) | 0.07346 (8) | 0.0553 (4) | |
| C2 | 0.79788 (18) | 1.14369 (17) | 0.12997 (8) | 0.0657 (5) | |
| H2A | 0.7282 | 1.1988 | 0.1186 | 0.079* | |
| H2B | 0.8670 | 1.1966 | 0.1444 | 0.079* | |
| C3 | 0.75608 (18) | 1.05776 (18) | 0.18283 (9) | 0.0670 (5) | |
| H3A | 0.7474 | 1.1067 | 0.2209 | 0.080* | |
| H3B | 0.6743 | 1.0211 | 0.1730 | 0.080* | |
| C13 | 1.0503 (2) | 0.6319 (2) | 0.33569 (9) | 0.0717 (6) | |
| H13A | 1.0384 | 0.6062 | 0.3783 | 0.108* | |
| H13B | 1.1334 | 0.6671 | 0.3308 | 0.108* | |
| H13C | 1.0412 | 0.5598 | 0.3088 | 0.108* | |
| C10 | 0.9031 (2) | 1.15856 (19) | 0.02626 (9) | 0.0774 (6) | |
| H10A | 0.9746 | 1.1991 | 0.0453 | 0.116* | |
| H10B | 0.8437 | 1.2216 | 0.0127 | 0.116* | |
| H10C | 0.9307 | 1.1098 | −0.0090 | 0.116* | |
| C11 | 0.7364 (2) | 0.9942 (2) | 0.04359 (11) | 0.0801 (6) | |
| H11A | 0.7687 | 0.9537 | 0.0068 | 0.120* | |
| H11B | 0.6672 | 1.0485 | 0.0325 | 0.120* | |
| H11C | 0.7076 | 0.9311 | 0.0725 | 0.120* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.0605 (7) | 0.0550 (7) | 0.0466 (6) | 0.0166 (5) | −0.0064 (5) | 0.0060 (5) |
| O2 | 0.0642 (7) | 0.0578 (7) | 0.0469 (6) | 0.0220 (6) | 0.0037 (5) | 0.0064 (5) |
| C9 | 0.0420 (8) | 0.0391 (8) | 0.0418 (7) | 0.0004 (6) | −0.0102 (6) | −0.0035 (6) |
| O3 | 0.0626 (7) | 0.0610 (8) | 0.0621 (8) | 0.0078 (6) | 0.0188 (7) | −0.0060 (6) |
| C7 | 0.0381 (7) | 0.0363 (7) | 0.0427 (7) | 0.0005 (6) | −0.0055 (6) | −0.0035 (6) |
| O4 | 0.0725 (8) | 0.0614 (7) | 0.0495 (6) | −0.0088 (6) | 0.0142 (6) | 0.0021 (5) |
| C8 | 0.0384 (7) | 0.0433 (8) | 0.0393 (7) | 0.0037 (6) | −0.0016 (5) | −0.0030 (6) |
| C4 | 0.0408 (8) | 0.0400 (8) | 0.0548 (8) | 0.0043 (6) | −0.0045 (7) | −0.0072 (6) |
| C6 | 0.0425 (8) | 0.0359 (7) | 0.0406 (7) | −0.0070 (6) | −0.0024 (6) | −0.0052 (6) |
| C12 | 0.0533 (9) | 0.0437 (8) | 0.0433 (8) | −0.0129 (7) | −0.0015 (7) | −0.0023 (7) |
| C5 | 0.0388 (8) | 0.0403 (7) | 0.0492 (8) | −0.0038 (6) | 0.0028 (6) | −0.0100 (6) |
| C1 | 0.0624 (10) | 0.0412 (8) | 0.0622 (10) | 0.0110 (7) | −0.0207 (8) | 0.0042 (7) |
| C2 | 0.0660 (11) | 0.0489 (9) | 0.0822 (12) | 0.0191 (9) | −0.0169 (10) | −0.0018 (9) |
| C3 | 0.0609 (11) | 0.0643 (11) | 0.0758 (12) | 0.0237 (9) | −0.0025 (9) | −0.0044 (9) |
| C13 | 0.0795 (13) | 0.0825 (14) | 0.0532 (10) | 0.0105 (10) | 0.0037 (9) | 0.0208 (9) |
| C10 | 0.0952 (15) | 0.0560 (11) | 0.0811 (13) | 0.0109 (11) | −0.0145 (11) | 0.0178 (10) |
| C11 | 0.0806 (14) | 0.0621 (11) | 0.0975 (15) | 0.0070 (11) | −0.0408 (12) | −0.0017 (11) |
Geometric parameters (Å, °)
| O1—C9 | 1.3471 (18) | C1—C2 | 1.497 (2) |
| O1—C1 | 1.4699 (18) | C1—C11 | 1.509 (3) |
| O2—C7 | 1.3496 (17) | C1—C10 | 1.520 (3) |
| O2—H102 | 0.97 (2) | C2—C3 | 1.517 (3) |
| C9—C4 | 1.383 (2) | C2—H2A | 0.9700 |
| C9—C8 | 1.397 (2) | C2—H2B | 0.9700 |
| O3—C5 | 1.3432 (18) | C3—H3A | 0.9700 |
| O3—H103 | 0.86 (2) | C3—H3B | 0.9700 |
| C7—C8 | 1.365 (2) | C13—H13A | 0.9600 |
| C7—C6 | 1.426 (2) | C13—H13B | 0.9600 |
| O4—C12 | 1.2566 (19) | C13—H13C | 0.9600 |
| C8—H8 | 0.9300 | C10—H10A | 0.9600 |
| C4—C5 | 1.386 (2) | C10—H10B | 0.9600 |
| C4—C3 | 1.502 (2) | C10—H10C | 0.9600 |
| C6—C5 | 1.422 (2) | C11—H11A | 0.9600 |
| C6—C12 | 1.441 (2) | C11—H11B | 0.9600 |
| C12—C13 | 1.482 (2) | C11—H11C | 0.9600 |
| C9—O1—C1 | 119.33 (12) | C1—C2—C3 | 112.68 (15) |
| C7—O2—H102 | 111.0 (11) | C1—C2—H2A | 109.1 |
| O1—C9—C4 | 123.42 (14) | C3—C2—H2A | 109.1 |
| O1—C9—C8 | 114.90 (12) | C1—C2—H2B | 109.1 |
| C4—C9—C8 | 121.68 (13) | C3—C2—H2B | 109.1 |
| C5—O3—H103 | 106.8 (14) | H2A—C2—H2B | 107.8 |
| O2—C7—C8 | 120.88 (13) | C4—C3—C2 | 110.10 (15) |
| O2—C7—C6 | 118.15 (13) | C4—C3—H3A | 109.6 |
| C8—C7—C6 | 120.97 (13) | C2—C3—H3A | 109.6 |
| C7—C8—C9 | 120.46 (13) | C4—C3—H3B | 109.6 |
| C7—C8—H8 | 119.8 | C2—C3—H3B | 109.6 |
| C9—C8—H8 | 119.8 | H3A—C3—H3B | 108.2 |
| C9—C4—C5 | 117.34 (13) | C12—C13—H13A | 109.5 |
| C9—C4—C3 | 120.64 (15) | C12—C13—H13B | 109.5 |
| C5—C4—C3 | 121.99 (14) | H13A—C13—H13B | 109.5 |
| C5—C6—C7 | 115.98 (13) | C12—C13—H13C | 109.5 |
| C5—C6—C12 | 120.00 (13) | H13A—C13—H13C | 109.5 |
| C7—C6—C12 | 124.01 (13) | H13B—C13—H13C | 109.5 |
| O4—C12—C6 | 119.89 (15) | C1—C10—H10A | 109.5 |
| O4—C12—C13 | 116.79 (14) | C1—C10—H10B | 109.5 |
| C6—C12—C13 | 123.32 (14) | H10A—C10—H10B | 109.5 |
| O3—C5—C4 | 115.54 (14) | C1—C10—H10C | 109.5 |
| O3—C5—C6 | 120.90 (14) | H10A—C10—H10C | 109.5 |
| C4—C5—C6 | 123.56 (13) | H10B—C10—H10C | 109.5 |
| O1—C1—C2 | 109.98 (12) | C1—C11—H11A | 109.5 |
| O1—C1—C11 | 106.62 (13) | C1—C11—H11B | 109.5 |
| C2—C1—C11 | 113.80 (18) | H11A—C11—H11B | 109.5 |
| O1—C1—C10 | 103.32 (15) | C1—C11—H11C | 109.5 |
| C2—C1—C10 | 111.17 (15) | H11A—C11—H11C | 109.5 |
| C11—C1—C10 | 111.33 (16) | H11B—C11—H11C | 109.5 |
| C1—O1—C9—C4 | −9.6 (2) | C9—C4—C5—O3 | 179.59 (12) |
| C1—O1—C9—C8 | 170.94 (13) | C3—C4—C5—O3 | 1.4 (2) |
| O2—C7—C8—C9 | 178.90 (13) | C9—C4—C5—C6 | −1.1 (2) |
| C6—C7—C8—C9 | 0.0 (2) | C3—C4—C5—C6 | −179.29 (14) |
| O1—C9—C8—C7 | 178.31 (12) | C7—C6—C5—O3 | 179.24 (13) |
| C4—C9—C8—C7 | −1.2 (2) | C12—C6—C5—O3 | −1.8 (2) |
| O1—C9—C4—C5 | −177.76 (13) | C7—C6—C5—C4 | 0.0 (2) |
| C8—C9—C4—C5 | 1.7 (2) | C12—C6—C5—C4 | 178.93 (13) |
| O1—C9—C4—C3 | 0.5 (2) | C9—O1—C1—C2 | 36.82 (19) |
| C8—C9—C4—C3 | 179.93 (15) | C9—O1—C1—C11 | −87.00 (18) |
| O2—C7—C6—C5 | −178.34 (12) | C9—O1—C1—C10 | 155.56 (14) |
| C8—C7—C6—C5 | 0.6 (2) | O1—C1—C2—C3 | −55.9 (2) |
| O2—C7—C6—C12 | 2.7 (2) | C11—C1—C2—C3 | 63.6 (2) |
| C8—C7—C6—C12 | −178.32 (13) | C10—C1—C2—C3 | −169.70 (14) |
| C5—C6—C12—O4 | 4.3 (2) | C9—C4—C3—C2 | −19.4 (2) |
| C7—C6—C12—O4 | −176.84 (14) | C5—C4—C3—C2 | 158.76 (15) |
| C5—C6—C12—C13 | −175.88 (16) | C1—C2—C3—C4 | 47.0 (2) |
| C7—C6—C12—C13 | 3.0 (2) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| O2—H102···O4i | 0.97 (2) | 1.77 (2) | 2.737 (2) | 179 (1) |
| O3—H103···O4 | 0.86 (2) | 1.71 (2) | 2.501 (2) | 151 (2) |
Symmetry codes: (i) y+1/2, −x+3/2, z−1/4.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LH5372).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536811047982/lh5372sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811047982/lh5372Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811047982/lh5372Isup3.mol
Supplementary material file. DOI: 10.1107/S1600536811047982/lh5372Isup4.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


