Skip to main content
Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Nov 25;67(Pt 12):o3427. doi: 10.1107/S1600536811048665

1-Benzyl-6-chloro­indoline-2,3-dione

Hua-quan Liu a, Dong-mei Fan a, De-cai Wang a,*, Ping-Kai Ou-yang a
PMCID: PMC3239061  PMID: 22199909

Abstract

In the title compound, C15H10ClNO2,the dihedral angle between the mean planes of the benzene and 6-chloro­indoline-2,3-dione ring systems, linked through a methyl­ene group, is 81.68 (10)°. In the crystal, mol­ecules are connected by C—H⋯O hydrogen bonds, generating C(6) chains propagating in [010].

Related literature

For general background to isatin derivatives, see: Vine et al. (2007); Matesic et al. (2008). For further synthetic details, see: Bouhfid et al. (2005).graphic file with name e-67-o3427-scheme1.jpg

Experimental

Crystal data

  • C15H10ClNO2

  • M r = 271.69

  • Triclinic, Inline graphic

  • a = 7.1870 (14) Å

  • b = 7.5800 (15) Å

  • c = 12.012 (2) Å

  • α = 80.24 (3)°

  • β = 84.90 (3)°

  • γ = 79.74 (3)°

  • V = 633.4 (2) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.30 mm−1

  • T = 293 K

  • 0.30 × 0.20 × 0.10 mm

Data collection

  • Enraf–Nonius CAD-4 diffractometer

  • Absorption correction: ψ scan (North et al., 1968) T min = 0.916, T max = 0.971

  • 2520 measured reflections

  • 2322 independent reflections

  • 1837 reflections with I > 2σ(I)

  • R int = 0.015

  • 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

  • R[F 2 > 2σ(F 2)] = 0.045

  • wR(F 2) = 0.155

  • S = 1.00

  • 2322 reflections

  • 172 parameters

  • 1 restraint

  • H-atom parameters constrained

  • Δρmax = 0.19 e Å−3

  • Δρmin = −0.25 e Å−3

Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811048665/hb6512sup1.cif

e-67-o3427-sup1.cif (17.7KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811048665/hb6512Isup2.hkl

e-67-o3427-Isup2.hkl (114.1KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811048665/hb6512Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C9—H9A⋯O1i 0.93 2.58 3.431 (3) 152

Symmetry code: (i) Inline graphic.

Acknowledgments

The authors thank the Center of Testing and Analysis, Nanjing University, for support.

supplementary crystallographic information

Comment

Halogenated derivatives of isatin have been found to exhibit cytotoxic and antineoplastic activity(Vine et al., 2007; Matesic et al., 2008). As a part of our studies into the synthesis of isatin derivatives, the title compound (I) 1-benzyl-6-chloroindoline-2,3-dione was synthesized (Bouhfid et al. (2005)). We report herein its crystal structure.

In the title compound, C15H10ClNO2, the indoline and benzene moieties are linked by a methylene group with a C6—C7(methylene)-N angle of 112.49 (2)° (Fig. 1). The dihedral angle between the mean planes of the benzene and 6-chloroindoline-2,3-dione is 81.68 (10) °. In the crystal structure, C—H···O hydrogen bonds link the molecules (Fig. 2 and Table 1).

Experimental

Isatin(1.47 g, 0.01 mol) was reacted with benzyl bromide (0.02 mol) in the presence of K2CO3 (2.76 g, 0.02 mol) and tetrabutylammonium bromide (0.32 g, 0.001 mol) in DMF (60 ml). After 12 h stirring at rt, the precipitate was removed by filtration and purified by recrystallization from ethanol(m.p. 175.2–176.1 °C; yield 70%). The yellow blocks of the title compound were obtained by slow evaporation from ethanol at room temperature.

Refinement

All H atoms were placed geometrically (C—H = 0.93–0.96 Å) and refined as riding with Uiso(H) = 1.2Ueq(carrier) or 1.5Ueq(methyl carrier).

Figures

Fig. 1.

Fig. 1.

The molecular structure of (I), showing displacement ellipsoids at the 30% probability level.

Fig. 2.

Fig. 2.

A packing diagram of (I). The intermolecular hydrogen bonds are shown as dashed lines.

Crystal data

C15H10ClNO2 Z = 2
Mr = 271.69 F(000) = 280
Triclinic, P1 Dx = 1.424 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 7.1870 (14) Å Cell parameters from 25 reflections
b = 7.5800 (15) Å θ = 10–13°
c = 12.012 (2) Å µ = 0.30 mm1
α = 80.24 (3)° T = 293 K
β = 84.90 (3)° Block, yellow
γ = 79.74 (3)° 0.30 × 0.20 × 0.10 mm
V = 633.4 (2) Å3

Data collection

Enraf–Nonius CAD-4 diffractometer 1837 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube Rint = 0.015
graphite θmax = 25.4°, θmin = 1.7°
ω/2θ scans h = 0→8
Absorption correction: ψ scan (North et al., 1968) k = −8→9
Tmin = 0.916, Tmax = 0.971 l = −14→14
2520 measured reflections 3 standard reflections every 200 reflections
2322 independent reflections intensity decay: 1%

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.155 H-atom parameters constrained
S = 1.00 w = 1/[σ2(Fo2) + (0.1P)2 + 0.160P] where P = (Fo2 + 2Fc2)/3
2322 reflections (Δ/σ)max < 0.001
172 parameters Δρmax = 0.19 e Å3
1 restraint Δρmin = −0.25 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cl 0.15893 (11) 0.74198 (12) 0.63411 (6) 0.0780 (3)
N 0.3532 (3) 0.5031 (3) 0.25370 (16) 0.0484 (5)
O1 0.3966 (3) 0.0350 (3) 0.3312 (2) 0.0835 (7)
C1 0.0178 (3) 0.6495 (3) 0.1103 (2) 0.0534 (6)
H1A 0.0667 0.5310 0.0999 0.064*
O2 0.4404 (3) 0.3028 (3) 0.12621 (18) 0.0805 (7)
C2 −0.1670 (4) 0.7221 (4) 0.0844 (2) 0.0599 (7)
H2A −0.2413 0.6526 0.0567 0.072*
C3 −0.2404 (4) 0.8970 (4) 0.0998 (2) 0.0608 (7)
H3A −0.3644 0.9461 0.0823 0.073*
C4 −0.1308 (4) 0.9994 (4) 0.1409 (2) 0.0640 (7)
H4A −0.1809 1.1177 0.1515 0.077*
C5 0.0548 (4) 0.9268 (3) 0.1666 (2) 0.0562 (6)
H5A 0.1283 0.9973 0.1942 0.067*
C6 0.1314 (3) 0.7513 (3) 0.15178 (18) 0.0446 (5)
C7 0.3348 (3) 0.6736 (3) 0.1755 (2) 0.0514 (6)
H7A 0.4057 0.6538 0.1049 0.062*
H7B 0.3896 0.7609 0.2071 0.062*
C8 0.3061 (3) 0.4880 (3) 0.37094 (19) 0.0432 (5)
C9 0.2568 (3) 0.6255 (3) 0.4348 (2) 0.0477 (6)
H9A 0.2489 0.7470 0.4027 0.057*
C10 0.2197 (3) 0.5730 (4) 0.5496 (2) 0.0528 (6)
C11 0.2296 (4) 0.3939 (4) 0.6003 (2) 0.0634 (7)
H11A 0.2030 0.3650 0.6778 0.076*
C12 0.2797 (4) 0.2591 (4) 0.5343 (3) 0.0622 (7)
H12A 0.2875 0.1378 0.5668 0.075*
C13 0.3180 (3) 0.3053 (3) 0.4202 (2) 0.0502 (6)
C14 0.3748 (3) 0.1993 (3) 0.3277 (2) 0.0582 (7)
C15 0.3958 (3) 0.3341 (3) 0.2226 (2) 0.0569 (7)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cl 0.0726 (5) 0.1012 (7) 0.0686 (5) −0.0153 (4) 0.0032 (4) −0.0405 (4)
N 0.0482 (11) 0.0473 (11) 0.0489 (11) 0.0000 (8) −0.0083 (9) −0.0108 (8)
O1 0.0867 (15) 0.0451 (11) 0.1232 (19) 0.0015 (10) −0.0367 (13) −0.0231 (11)
C1 0.0524 (14) 0.0538 (14) 0.0537 (14) −0.0048 (11) −0.0034 (11) −0.0114 (11)
O2 0.0847 (14) 0.0836 (15) 0.0721 (14) 0.0207 (11) −0.0193 (11) −0.0381 (11)
C2 0.0532 (15) 0.0760 (18) 0.0523 (15) −0.0125 (13) −0.0058 (11) −0.0116 (12)
C3 0.0512 (14) 0.0773 (18) 0.0454 (13) 0.0050 (13) −0.0029 (11) −0.0023 (12)
C4 0.0730 (18) 0.0544 (15) 0.0553 (15) 0.0097 (13) −0.0018 (13) −0.0051 (12)
C5 0.0682 (16) 0.0525 (14) 0.0487 (14) −0.0091 (12) −0.0068 (12) −0.0094 (11)
C6 0.0498 (13) 0.0476 (13) 0.0342 (11) −0.0078 (10) −0.0002 (9) −0.0016 (9)
C7 0.0474 (13) 0.0574 (14) 0.0489 (13) −0.0112 (11) −0.0016 (10) −0.0055 (11)
C8 0.0347 (11) 0.0441 (12) 0.0510 (13) −0.0048 (9) −0.0096 (9) −0.0066 (9)
C9 0.0441 (12) 0.0449 (12) 0.0550 (14) −0.0073 (10) −0.0075 (10) −0.0077 (10)
C10 0.0415 (12) 0.0674 (16) 0.0533 (14) −0.0119 (11) −0.0056 (10) −0.0156 (12)
C11 0.0532 (15) 0.083 (2) 0.0517 (15) −0.0192 (13) −0.0068 (12) 0.0057 (13)
C12 0.0577 (15) 0.0552 (15) 0.0711 (18) −0.0142 (12) −0.0175 (13) 0.0090 (13)
C13 0.0419 (12) 0.0435 (13) 0.0656 (16) −0.0075 (9) −0.0162 (11) −0.0027 (11)
C14 0.0484 (13) 0.0441 (13) 0.0858 (19) 0.0003 (10) −0.0270 (13) −0.0175 (12)
C15 0.0471 (13) 0.0589 (15) 0.0652 (16) 0.0085 (11) −0.0178 (11) −0.0216 (12)

Geometric parameters (Å, °)

Cl—C10 1.739 (3) C5—H5A 0.9300
N—C15 1.370 (3) C6—C7 1.509 (3)
N—C8 1.409 (3) C7—H7A 0.9700
N—C7 1.456 (3) C7—H7B 0.9700
O1—C14 1.221 (3) C8—C9 1.375 (3)
C1—C2 1.385 (4) C8—C13 1.402 (3)
C1—C6 1.391 (3) C9—C10 1.385 (4)
C1—H1A 0.9300 C9—H9A 0.9300
O2—C15 1.224 (3) C10—C11 1.383 (4)
C2—C3 1.374 (4) C11—C12 1.377 (4)
C2—H2A 0.9300 C11—H11A 0.9300
C3—C4 1.372 (4) C12—C13 1.372 (4)
C3—H3A 0.9300 C12—H12A 0.9300
C4—C5 1.390 (4) C13—C14 1.467 (4)
C4—H4A 0.9300 C14—C15 1.498 (3)
C5—C6 1.381 (3)
C15—N—C8 110.1 (2) H7A—C7—H7B 107.8
C15—N—C7 125.0 (2) C9—C8—C13 121.4 (2)
C8—N—C7 124.52 (19) C9—C8—N 128.0 (2)
C2—C1—C6 121.0 (2) C13—C8—N 110.6 (2)
C2—C1—H1A 119.5 C8—C9—C10 116.3 (2)
C6—C1—H1A 119.5 C8—C9—H9A 121.9
C3—C2—C1 119.8 (3) C10—C9—H9A 121.9
C3—C2—H2A 120.1 C11—C10—C9 123.5 (2)
C1—C2—H2A 120.1 C11—C10—Cl 118.5 (2)
C4—C3—C2 120.0 (2) C9—C10—Cl 118.0 (2)
C4—C3—H3A 120.0 C12—C11—C10 118.9 (3)
C2—C3—H3A 120.0 C12—C11—H11A 120.5
C3—C4—C5 120.1 (3) C10—C11—H11A 120.5
C3—C4—H4A 119.9 C13—C12—C11 119.4 (2)
C5—C4—H4A 119.9 C13—C12—H12A 120.3
C6—C5—C4 120.7 (3) C11—C12—H12A 120.3
C6—C5—H5A 119.6 C12—C13—C8 120.4 (2)
C4—C5—H5A 119.6 C12—C13—C14 133.5 (2)
C5—C6—C1 118.2 (2) C8—C13—C14 106.1 (2)
C5—C6—C7 121.1 (2) O1—C14—C13 128.7 (3)
C1—C6—C7 120.6 (2) O1—C14—C15 125.0 (3)
N—C7—C6 112.49 (19) C13—C14—C15 106.3 (2)
N—C7—H7A 109.1 O2—C15—N 125.5 (2)
C6—C7—H7A 109.1 O2—C15—C14 127.6 (2)
N—C7—H7B 109.1 N—C15—C14 107.0 (2)
C6—C7—H7B 109.1
C6—C1—C2—C3 −0.1 (4) Cl—C10—C11—C12 −179.28 (19)
C1—C2—C3—C4 −0.1 (4) C10—C11—C12—C13 −0.1 (4)
C2—C3—C4—C5 0.3 (4) C11—C12—C13—C8 −0.1 (4)
C3—C4—C5—C6 −0.2 (4) C11—C12—C13—C14 179.6 (2)
C4—C5—C6—C1 0.1 (4) C9—C8—C13—C12 0.2 (3)
C4—C5—C6—C7 177.8 (2) N—C8—C13—C12 179.4 (2)
C2—C1—C6—C5 0.1 (4) C9—C8—C13—C14 −179.6 (2)
C2—C1—C6—C7 −177.6 (2) N—C8—C13—C14 −0.4 (2)
C15—N—C7—C6 97.7 (3) C12—C13—C14—O1 2.7 (5)
C8—N—C7—C6 −73.8 (3) C8—C13—C14—O1 −177.6 (2)
C5—C6—C7—N 126.2 (2) C12—C13—C14—C15 −179.3 (3)
C1—C6—C7—N −56.1 (3) C8—C13—C14—C15 0.4 (2)
C15—N—C8—C9 179.4 (2) C8—N—C15—O2 179.3 (2)
C7—N—C8—C9 −8.0 (3) C7—N—C15—O2 6.8 (4)
C15—N—C8—C13 0.3 (3) C8—N—C15—C14 0.0 (3)
C7—N—C8—C13 172.9 (2) C7—N—C15—C14 −172.6 (2)
C13—C8—C9—C10 −0.1 (3) O1—C14—C15—O2 −1.5 (4)
N—C8—C9—C10 −179.1 (2) C13—C14—C15—O2 −179.5 (3)
C8—C9—C10—C11 −0.1 (4) O1—C14—C15—N 177.8 (2)
C8—C9—C10—Cl 179.39 (16) C13—C14—C15—N −0.2 (3)
C9—C10—C11—C12 0.3 (4)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C9—H9A···O1i 0.93 2.58 3.431 (3) 152

Symmetry codes: (i) x, y+1, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB6512).

References

  1. Bouhfid, R., Joly, N., Massoui, M., Cecchelli, R., Lequart, V., Martin, P. & Essassi, E. M. (2005). Heterocycles, 65, 2949–2955.
  2. Enraf–Nonius (1994). CAD-4 EXPRESS Enraf–Nonius, Delft, The Netherlands.
  3. Harms, K. & Wocadlo, S. (1995). XCAD4 University of Marburg, Germany.
  4. Matesic, L., Locke, J. M., Bremner, J. B., Pyne, S. G., Skropeta, D., Ranson, M. & Vine, K. L. (2008). Bioorg. Med. Chem. 16, 3118–3124. [DOI] [PubMed]
  5. North, A. C. T., Phillips, D. C. & Mathews, F. S. (1968). Acta Cryst. A24, 351–359.
  6. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  7. Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]
  8. Vine, K. L., Locke, J. M., Ranson, M., Pyne, S. G. & Bremner, J. B. (2007). Bioorg. Med. Chem. 15, 931–938. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811048665/hb6512sup1.cif

e-67-o3427-sup1.cif (17.7KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811048665/hb6512Isup2.hkl

e-67-o3427-Isup2.hkl (114.1KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811048665/hb6512Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

RESOURCES