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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Nov 30;67(Pt 12):o3455. doi: 10.1107/S1600536811049737

(2,4-Dipropoxyphen­yl)boronic acid

Marek Dąbrowski a, Krzysztof Durka a,*, Sergiusz Luliński a, Janusz Serwatowski a
PMCID: PMC3239085  PMID: 22199933

Abstract

In the crystal, the title compound, C12H19BO4, exists as a centrosymmetric O—H⋯O hydrogen-bonded dimer. Dimers are linked via C—H⋯O hydrogen bonds, generating an infinite zigzag chain oriented parallel to [1Inline graphic1]. The chains are assembled, giving sheets aligned parallel to (21Inline graphic) and inter­connected by weak C—H⋯π inter­actions, producing a three-dimensional network.

Related literature

For the structural characterization of related ortho-alk­oxy aryl­boronic acids, see: Dąbrowski et al. (2008, 2009); Yang et al. (2005).graphic file with name e-67-o3455-scheme1.jpg

Experimental

Crystal data

  • C12H19BO4

  • M r = 238.08

  • Triclinic, Inline graphic

  • a = 7.9630 (9) Å

  • b = 8.8014 (12) Å

  • c = 9.3182 (13) Å

  • α = 101.585 (11)°

  • β = 91.924 (10)°

  • γ = 90.826 (10)°

  • V = 639.26 (15) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.09 mm−1

  • T = 100 K

  • 0.15 × 0.12 × 0.10 mm

Data collection

  • Bruker APEXII diffractometer

  • Absorption correction: multi-scan (SORTAV; Blessing, 1995) T min = 0.986, T max = 0.992

  • 12243 measured reflections

  • 2950 independent reflections

  • 1981 reflections with I > 2σ(I)

  • R int = 0.024

Refinement

  • R[F 2 > 2σ(F 2)] = 0.033

  • wR(F 2) = 0.081

  • S = 0.90

  • 2950 reflections

  • 154 parameters

  • H-atom parameters constrained

  • Δρmax = 0.35 e Å−3

  • Δρmin = −0.19 e Å−3

Data collection: APEX2 (Bruker, 2010); cell refinement: SAINT (Bruker, 2010); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXS97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 2005); software used to prepare material for publication: PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811049737/zj2041sup1.cif

e-67-o3455-sup1.cif (23.8KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811049737/zj2041Isup2.hkl

e-67-o3455-Isup2.hkl (169.3KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811049737/zj2041Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H1⋯O2i 0.84 1.96 2.794 (1) 176
O2—H2⋯O3 0.84 1.95 2.672 (1) 144
C5—H5⋯O4ii 0.95 2.50 3.445 (1) 175
C10—H10B⋯O1iii 0.99 2.84 3.78 (1) 158
C8—H8BCg1iv 0.99 2.83 3.671 (1) 143

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic.

Acknowledgments

The X-ray measurements were undertaken in the Crystallographic Unit of the Physical Chemistry Laboratory at the Chemistry Department of the University of Warsaw. This work was supported by the Aldrich Chemical Co. through donation of chemicals and equipment, and by Warsaw University of Technology.

supplementary crystallographic information

Comment

The ability of arylboronic acids to form supramolecular assemblies due to intermolecular hydrogen bonding is well known. Our interest has focused on ortho-alkoxy derivatives and the influence of various factors (including the number and length of the alkoxy group) on their structural behaviour.

The molecular structure of (I) shows the boronic groups possesses an exo-endo conformation. The entire molecule including both propoxy groups remains essentially planar. The endo-oriented OH group is engaged in an intramolecular O—H···O hydrogen bond (Table 1) with the 2-propoxy O atom, resulting in the formation of a six-membered ring. This motif is generally typical for structures of all ortho-alkoxyarylboronic acids (Yang et al., 2005; Dąbrowski et al., 2008; Luliński, 2008).

Centrosymmetric O—H···O hydrogen-bonded dimers of (I) are linked by weaker C—H···O hydrogen bonds connecting the H5 atom attached to aromatic ring with the O atom of the 4-propoxy group in the adjacent molecule. Thus, another centrosymmetric dimeric motif can be distinguished. These two alternating dimeric motifs generate a zig-zag chain which runs along the [111] direction. Adjacent chains are ordered due to van der Waals interactions of propoxy groups which leads to the formation of a 2D layer aligned parallel to the (211) plane. The supramolecular architecture extends further due to weak C—H···O contacts between α-methylene units of 4-propoxy groups and one of O atoms of the boronic group. Finally, C—H···π interactions occur between the β-methylene units of the 2-propoxy group and the aromatic ring of a molecule in the adjacent layer. As a result, a three-dimensional network is formed.

Experimental

The title compound was received from Aldrich. Crystals suitable for single-crystal X-ray diffraction analysis were grown by slow evaporation of a solution of the acid (0.2 g) in acetone/water (10 ml, 1:1).

Refinement

All hydrogen atoms were placed in calculated positions with C—H distance of 0.95Å (phenyl), 0.98Å (methyl), 0.99Å (methylene) and O—H distance of 0.84 Å.They were visible in difference maps and they were included in the refinement in riding-motion approximation with Uiso(phenyl H)=1.2Ueq(C), Uiso(methyl H)=1.5Ueq(C) and Uiso(OH H)=1.5Ueq(O).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound (I) with the atom numbering scheme. Displacement ellipsoids for non-H atoms are drawn at the 50% probability level.

Fig. 2.

Fig. 2.

Formation of two-dimensional layer constructed from one-dimensional chains, which are generated through O—H···O and C—H···O interactions (red and blue colours, respectively).

Fig. 3.

Fig. 3.

The three-dimensional supramolecular structure of (I). Intermolecular C—H···O and C—H···π interactions formed between two-dimensional layers are depicted as blue and green lines, respectively.

Crystal data

C12H19BO4 Z = 2
Mr = 238.08 F(000) = 256
Triclinic, P1 Dx = 1.237 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 7.9630 (9) Å Cell parameters from 1540 reflections
b = 8.8014 (12) Å θ = 2.7–28.4°
c = 9.3182 (13) Å µ = 0.09 mm1
α = 101.585 (11)° T = 100 K
β = 91.924 (10)° Unshaped, colourless
γ = 90.826 (10)° 0.15 × 0.12 × 0.10 mm
V = 639.26 (15) Å3

Data collection

Bruker APEXII diffractometer 2950 independent reflections
Radiation source: TXS rotating anode 1981 reflections with I > 2σ(I)
multi-layer optics Rint = 0.024
ω scans θmax = 27.5°, θmin = 2.9°
Absorption correction: multi-scan (SORTAV; Blessing, 1995) h = −10→10
Tmin = 0.986, Tmax = 0.992 k = −11→11
12243 measured reflections l = −12→12

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.081 H-atom parameters constrained
S = 0.90 w = 1/[σ2(Fo2) + (0.0487P)2] where P = (Fo2 + 2Fc2)/3
2950 reflections (Δ/σ)max < 0.001
154 parameters Δρmax = 0.35 e Å3
0 restraints Δρmin = −0.19 e Å3

Special details

Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.62433 (10) 0.32104 (9) −0.46474 (8) 0.0260 (3)
O2 0.54695 (10) 0.55834 (9) −0.31800 (8) 0.0243 (3)
O3 0.67310 (10) 0.60724 (8) −0.04282 (8) 0.0209 (2)
O4 0.96656 (9) 0.20013 (9) 0.13916 (8) 0.0211 (2)
C1 0.72028 (13) 0.36735 (12) −0.19957 (11) 0.0169 (3)
C2 0.73803 (13) 0.46070 (12) −0.05836 (11) 0.0174 (3)
C3 0.81690 (13) 0.40958 (12) 0.05908 (11) 0.0176 (3)
C4 0.88240 (13) 0.26147 (13) 0.03411 (11) 0.0173 (3)
C5 0.86780 (13) 0.16440 (12) −0.10371 (11) 0.0181 (3)
C6 0.78780 (13) 0.21836 (13) −0.21711 (11) 0.0187 (3)
C7 0.69286 (13) 0.71279 (12) 0.09706 (11) 0.0177 (3)
C8 0.61739 (14) 0.86468 (12) 0.08068 (12) 0.0215 (3)
C9 0.62471 (15) 0.98129 (13) 0.22669 (12) 0.0282 (4)
C10 0.99022 (14) 0.29466 (12) 0.28420 (11) 0.0192 (3)
C11 1.09520 (15) 0.20257 (13) 0.37344 (11) 0.0227 (3)
C12 1.13065 (15) 0.29436 (14) 0.52911 (12) 0.0274 (4)
B1 0.62724 (15) 0.41844 (14) −0.33306 (13) 0.0179 (3)
H1 0.57125 0.36132 −0.52650 0.0390*
H2 0.56001 0.60749 −0.23113 0.0363*
H3 0.82554 0.47458 0.15376 0.0212*
H5 0.91199 0.06295 −0.11955 0.0218*
H6 0.77807 0.15181 −0.31097 0.0224*
H7A 0.63476 0.67028 0.17313 0.0212*
H7B 0.81346 0.72820 0.12665 0.0212*
H8A 0.67939 0.90801 0.00721 0.0258*
H8B 0.49893 0.84662 0.04476 0.0258*
H9A 0.57467 1.07872 0.21307 0.0423*
H9B 0.56207 0.93909 0.29913 0.0423*
H9C 0.74208 1.00076 0.26141 0.0423*
H10A 1.04869 0.39351 0.27963 0.0231*
H10B 0.88032 0.31853 0.32916 0.0231*
H11A 1.03500 0.10437 0.37739 0.0272*
H11B 1.20288 0.17630 0.32526 0.0272*
H12A 1.19865 0.23225 0.58440 0.0411*
H12B 1.19187 0.39080 0.52538 0.0411*
H12C 1.02418 0.31895 0.57745 0.0411*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0343 (5) 0.0274 (5) 0.0162 (4) 0.0093 (4) −0.0060 (3) 0.0047 (3)
O2 0.0343 (5) 0.0246 (4) 0.0133 (4) 0.0074 (3) −0.0056 (3) 0.0031 (3)
O3 0.0294 (4) 0.0171 (4) 0.0156 (4) 0.0066 (3) −0.0050 (3) 0.0026 (3)
O4 0.0283 (4) 0.0201 (4) 0.0146 (4) 0.0076 (3) −0.0057 (3) 0.0031 (3)
C1 0.0165 (5) 0.0199 (5) 0.0150 (5) 0.0004 (4) −0.0009 (4) 0.0056 (4)
C2 0.0173 (5) 0.0176 (5) 0.0182 (5) 0.0023 (4) −0.0004 (4) 0.0061 (4)
C3 0.0204 (5) 0.0186 (5) 0.0132 (5) 0.0019 (4) −0.0014 (4) 0.0017 (4)
C4 0.0163 (5) 0.0208 (5) 0.0160 (5) 0.0011 (4) −0.0016 (4) 0.0072 (4)
C5 0.0200 (6) 0.0149 (5) 0.0194 (6) 0.0038 (4) 0.0004 (4) 0.0031 (4)
C6 0.0193 (5) 0.0221 (6) 0.0142 (5) 0.0000 (4) −0.0009 (4) 0.0027 (4)
C7 0.0200 (5) 0.0190 (6) 0.0134 (5) 0.0013 (4) −0.0021 (4) 0.0021 (4)
C8 0.0257 (6) 0.0189 (6) 0.0201 (6) 0.0038 (5) −0.0012 (4) 0.0048 (5)
C9 0.0351 (7) 0.0210 (6) 0.0269 (6) 0.0047 (5) −0.0034 (5) 0.0016 (5)
C10 0.0240 (6) 0.0182 (5) 0.0149 (5) 0.0032 (4) −0.0030 (4) 0.0023 (4)
C11 0.0288 (6) 0.0225 (6) 0.0167 (5) 0.0046 (5) −0.0049 (4) 0.0041 (5)
C12 0.0357 (7) 0.0281 (7) 0.0182 (6) 0.0041 (5) −0.0063 (5) 0.0051 (5)
B1 0.0167 (6) 0.0206 (6) 0.0175 (6) 0.0000 (5) −0.0010 (5) 0.0067 (5)

Geometric parameters (Å, °)

O1—B1 1.3476 (14) C11—C12 1.5270 (15)
O2—B1 1.3798 (15) C3—H3 0.9500
O3—C2 1.3788 (13) C5—H5 0.9500
O3—C7 1.4431 (13) C6—H6 0.9500
O4—C4 1.3702 (13) C7—H7A 0.9900
O4—C10 1.4426 (13) C7—H7B 0.9900
O1—H1 0.8400 C8—H8A 0.9900
O2—H2 0.8400 C8—H8B 0.9900
C1—C2 1.4058 (14) C9—H9A 0.9800
C1—C6 1.4055 (16) C9—H9B 0.9800
C1—B1 1.5719 (16) C9—H9C 0.9800
C2—C3 1.3979 (15) C10—H10A 0.9900
C3—C4 1.3898 (16) C10—H10B 0.9900
C4—C5 1.3925 (15) C11—H11A 0.9900
C5—C6 1.3831 (15) C11—H11B 0.9900
C7—C8 1.5068 (15) C12—H12A 0.9800
C8—C9 1.5297 (16) C12—H12B 0.9800
C10—C11 1.5135 (16) C12—H12C 0.9800
O1···O2i 2.7938 (12) H3···C10 2.5400
O2···O3 2.6722 (11) H3···H7A 2.3000
O2···O1i 2.7938 (12) H3···H7B 2.3000
O3···O2 2.6722 (11) H3···H10A 2.3000
O1···H10Bii 2.8400 H3···H10B 2.3700
O1···H6 2.5600 H5···O4iv 2.5000
O2···H1i 1.9600 H5···C11iv 2.9700
O3···H2 1.9500 H6···O1 2.5600
O4···H9Ciii 2.9000 H7A···C3 2.7800
O4···H5iv 2.5000 H7A···H3 2.3000
C1···C7v 3.5564 (15) H7A···H9B 2.5100
C7···C1v 3.5564 (15) H7A···C1v 2.8700
C8···C8vi 3.5788 (16) H7A···B1v 2.8000
C1···H10Avii 3.0000 H7A···H12Aviii 2.5700
C1···H7Av 2.8700 H7B···C3 2.7500
C2···H2 2.6500 H7B···H3 2.3000
C3···H7B 2.7500 H7B···H9C 2.5600
C3···H10B 2.8200 H7B···C4vii 2.9000
C3···H7A 2.7800 H7B···C5vii 2.7300
C3···H10A 2.7400 H8A···C5ix 3.0600
C4···H7Bvii 2.9000 H8B···C5v 2.9900
C5···H7Bvii 2.7300 H8B···C6v 2.9500
C5···H8Bv 2.9900 H9B···H7A 2.5100
C5···H8Aiii 3.0600 H9B···C6v 3.1000
C6···H9Bv 3.1000 H9C···O4ix 2.9000
C6···H12Cii 2.9800 H9C···H7B 2.5600
C6···H8Bv 2.9500 H10A···C3 2.7400
C7···H12Aviii 3.0000 H10A···H3 2.3000
C7···H3 2.5000 H10A···H12B 2.5300
C10···H3 2.5400 H10A···C1vii 3.0000
C11···H5iv 2.9700 H10A···B1vii 3.0200
B1···H1i 2.9900 H10B···O1x 2.8400
B1···H7Av 2.8000 H10B···C3 2.8200
B1···H10Avii 3.0200 H10B···H3 2.3700
H1···O2i 1.9600 H10B···H12C 2.5500
H1···B1i 2.9900 H12A···C7viii 3.0000
H1···H2i 2.5200 H12A···H7Aviii 2.5700
H2···O3 1.9500 H12B···H10A 2.5300
H2···C2 2.6500 H12C···C6x 2.9800
H2···H1i 2.5200 H12C···H10B 2.5500
H3···C7 2.5000
C2—O3—C7 119.07 (8) C7—C8—H8B 109.00
C4—O4—C10 118.39 (8) C7—C8—H8A 109.00
B1—O1—H1 109.00 C9—C8—H8A 109.00
B1—O2—H2 109.00 C9—C8—H8B 109.00
C2—C1—C6 116.11 (9) H8A—C8—H8B 108.00
C2—C1—B1 124.11 (10) C8—C9—H9B 109.00
C6—C1—B1 119.76 (9) C8—C9—H9C 109.00
O3—C2—C1 115.62 (9) H9A—C9—H9B 109.00
C1—C2—C3 122.57 (10) C8—C9—H9A 109.00
O3—C2—C3 121.81 (9) H9A—C9—H9C 109.00
C2—C3—C4 118.46 (9) H9B—C9—H9C 109.00
O4—C4—C5 114.96 (10) O4—C10—H10A 110.00
O4—C4—C3 123.87 (9) H10A—C10—H10B 109.00
C3—C4—C5 121.17 (10) C11—C10—H10B 110.00
C4—C5—C6 118.80 (10) O4—C10—H10B 110.00
C1—C6—C5 122.88 (10) C11—C10—H10A 110.00
O3—C7—C8 107.64 (8) C10—C11—H11B 109.00
C7—C8—C9 111.13 (9) C10—C11—H11A 109.00
O4—C10—C11 106.96 (8) C12—C11—H11A 109.00
C10—C11—C12 111.14 (9) C12—C11—H11B 109.00
C2—C3—H3 121.00 H11A—C11—H11B 108.00
C4—C3—H3 121.00 C11—C12—H12B 109.00
C6—C5—H5 121.00 C11—C12—H12C 109.00
C4—C5—H5 121.00 H12A—C12—H12B 109.00
C1—C6—H6 119.00 C11—C12—H12A 109.00
C5—C6—H6 119.00 H12A—C12—H12C 109.00
O3—C7—H7A 110.00 H12B—C12—H12C 109.00
O3—C7—H7B 110.00 O2—B1—C1 121.77 (10)
H7A—C7—H7B 108.00 O1—B1—O2 119.62 (10)
C8—C7—H7B 110.00 O1—B1—C1 118.60 (10)
C8—C7—H7A 110.00
C7—O3—C2—C1 −177.25 (9) C2—C1—B1—O1 177.34 (10)
C7—O3—C2—C3 2.44 (14) B1—C1—C2—O3 −2.44 (15)
C2—O3—C7—C8 177.61 (9) C6—C1—B1—O1 −4.42 (15)
C10—O4—C4—C5 178.70 (9) O3—C2—C3—C4 −178.64 (10)
C10—O4—C4—C3 −0.52 (15) C1—C2—C3—C4 1.03 (16)
C4—O4—C10—C11 −176.48 (9) C2—C3—C4—C5 −1.12 (16)
C6—C1—C2—O3 179.27 (9) C2—C3—C4—O4 178.05 (10)
C2—C1—B1—O2 −3.72 (17) C3—C4—C5—C6 0.62 (16)
B1—C1—C6—C5 −178.48 (10) O4—C4—C5—C6 −178.62 (9)
C6—C1—B1—O2 174.52 (10) C4—C5—C6—C1 0.00 (17)
B1—C1—C2—C3 177.87 (10) O3—C7—C8—C9 177.03 (9)
C2—C1—C6—C5 −0.11 (16) O4—C10—C11—C12 178.86 (9)
C6—C1—C2—C3 −0.42 (15)

Symmetry codes: (i) −x+1, −y+1, −z−1; (ii) x, y, z−1; (iii) x, y−1, z; (iv) −x+2, −y, −z; (v) −x+1, −y+1, −z; (vi) −x+1, −y+2, −z; (vii) −x+2, −y+1, −z; (viii) −x+2, −y+1, −z+1; (ix) x, y+1, z; (x) x, y, z+1.

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O1—H1···O2i 0.840 1.960 2.794 (1) 176.0
O2—H2···O3 0.840 1.950 2.672 (1) 144.0
C5—H5···O4iv 0.950 2.500 3.445 (1) 175.0
C10—H10B···O1x 0.990 2.844 3.778 (1) 157.5
C8—H8B···Cg1xi 0.990 2.829 3.671 (1) 143.4

Symmetry codes: (i) −x+1, −y+1, −z−1; (iv) −x+2, −y, −z; (x) x, y, z+1; (xi) −x, −y, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: ZJ2041).

References

  1. Blessing, R. H. (1995). Acta Cryst. A51, 33–38. [DOI] [PubMed]
  2. Brandenburg, K. (2005). DIAMOND Crystal Impact GbR, Bonn, Germany.
  3. Bruker (2010). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  4. Dąbrowski, M., Luliński, S. & Serwatowski, J. (2008). Acta Cryst. E64, o437. [DOI] [PMC free article] [PubMed]
  5. Dąbrowski, M., Luliński, S., Serwatowski, J. & Wilmowicz, A. (2009). Acta Cryst. E65, o1669. [DOI] [PMC free article] [PubMed]
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  8. Yang, Y., Escobedo, J. O., Wong, A., Schowalter, C. M., Touchy, M. C., Jiao, L., Crowe, W. E., Fronczek, F. R. & Strongin, R. M. (2005). J. Org. Chem. 70, 6907–6912. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811049737/zj2041sup1.cif

e-67-o3455-sup1.cif (23.8KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811049737/zj2041Isup2.hkl

e-67-o3455-Isup2.hkl (169.3KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811049737/zj2041Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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