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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Nov 30;67(Pt 12):o3481. doi: 10.1107/S1600536811049865

Dimethyl 2,6-dimethyl-4-phenyl­pyridine-3,5-dicarboxyl­ate

Mukut Gohain a, Theunis J Muller a,*, Barend C B Bezuidenhoudt a
PMCID: PMC3239105  PMID: 22199953

Abstract

In the title compound, C17H17NO4, the dihedral angle between the benzene and pyridine rings is 75.51 (4)°. The benzene and pyridine rings are both approximately planar (r.m.s. deviations of 0.0040 and 0.0083 Å, respectively), indicating that the pyridine N atom is not protonated. The crystal structure is stabilized by weak inter­molecular C—H⋯O and C—H⋯N inter­actions.

Related literature

For the biological activity of pyridine derivatives, see: Lopez-Alarcon et al. (2004). For related structures, see: Rowan et al. (1996, 1997); Lou et al. (2010). For the sythesis, see: Debache et al. (2008). For the use of pyridine-type ligands in catalysis models, see: Roodt et al. (2011); van der Westhuizen et al. (2010) For standard bond lengths, see: Allen et al. (1987).graphic file with name e-67-o3481-scheme1.jpg

Experimental

Crystal data

  • C17H17NO4

  • M r = 299.32

  • Monoclinic, Inline graphic

  • a = 16.0732 (4) Å

  • b = 7.2497 (2) Å

  • c = 13.1339 (3) Å

  • β = 91.003 (1)°

  • V = 1530.20 (7) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.09 mm−1

  • T = 100 K

  • 0.42 × 0.36 × 0.18 mm

Data collection

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 2004) T min = 0.962, T max = 0.984

  • 26541 measured reflections

  • 3782 independent reflections

  • 3132 reflections with I > 2σ(I)

  • R int = 0.036

Refinement

  • R[F 2 > 2σ(F 2)] = 0.042

  • wR(F 2) = 0.114

  • S = 1.05

  • 3782 reflections

  • 203 parameters

  • H-atom parameters constrained

  • Δρmax = 0.31 e Å−3

  • Δρmin = −0.25 e Å−3

Data collection: APEX2 (Bruker, 2008); cell refinement: SAINT-Plus (Bruker, 2008); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg & Putz, 2005); software used to prepare material for publication: WinGX (Farrugia, 1999).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811049865/fk2046sup1.cif

e-67-o3481-sup1.cif (22.9KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811049865/fk2046Isup2.hkl

e-67-o3481-Isup2.hkl (181.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811049865/fk2046Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C6—H6B⋯O3i 0.98 2.42 3.3825 (15) 167
C7—H7B⋯O1ii 0.98 2.5 3.3826 (15) 149
C13—H13⋯N1iii 0.95 2.62 3.2701 (16) 126
C15—H15A⋯O2iv 0.98 2.56 3.5187 (17) 165

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic.

Acknowledgments

The University of the Free State and Sasol Ltd are gratefully acknowledged for financial support and Johannes van Tonder for the NMR data and help with the synthesis of the title compound. Special thanks are due to Prof Andreas Roodt.

supplementary crystallographic information

Comment

1,4-Dihydropyridines (1,4-DHPs) belong to a class of nitrogen containing heterocycles having a six-membered ring. These are analogues of NADH coenzymes and are an important class of drugs (Lopez-Alarcon et al. 2004). The oxidation of 1,4-DHP`s into the corresponding pyridines is one of the main metabolic pathways of these drugs. The title compound can be prepared by the catalytic oxidation of 1,4-dihydropyridine. The dihydropyrimidine synthesized by the known procedure through three components process disclosed in the literature (Debache et al. 2008). The oxidation of the dihdropyridine was carried out in the presence of 5 mol% of I2 as a catalyst using DMSO as solvent. The title compound, C17H17N1O4, (Figure 1) crystallized in the monoclinic space group P2(1)/c with Z = 4. The dihedral angle between the benzene ring and the pyridine ring is 75.51 (4)°. This compares well to 75.3 (4)° from the structure reported by Lou et al. (2010). The benzene ring (C8—C13) is flat (r.m.s = 0.0040) as well as the pyridine (N1, C1—C4) ring (r.m.s =0.0083). So the nitrogen in the pyridine ring is not protonated (Rowan et al., 1996 and 1997). The methyl groups at C1 and C5 are above the plane at 0.0165 (20) Å and 0.0589 (19)Å respectively. The carboxylate groups at C2 and C4 are also out of the plane by 0.0521 (18) and -0.1049 (18) Å respectively. Bond lengths and angles are within expected ranges (Allen et al., 1987). The packing is further stabilized by weak intermolecular C6—H6B···O3i, C7—H7B···O1ii, C15—H15A···O2iv and C13—H13···N1iii interactions (Table 1). (i = -x + 1, -y, -z + 1; ii = -x, -y, -z + 1; iii = x, -y - 1/2, z + 1/2; iv = -x, y + 1/2, -z + 1.5)

Experimental

1,4-dihydropyridine synthesis: Methylacetoacetate (2.5 mmol) and benzaldehyde (1 mmol) was added to ethanol (10 ml) and stirred. To this 5 mol % of phenyl boric acid was added as catalyst. The mixture was heated to reflux and stirred until completion. After completion of the reaction (monitored by TLC) the precipitated was filtered off and dried in oven at 60 °C before it was dissolved in a KOH (2 mmol) containing DMSO solution(3 ml). Molecular iodine 5 mol% was added and the mixture stirred at room temperature until completion of the reaction(TLC). Ice cold water (20 ml) was subsequently added and the reaction mixture stirred for 30 min, before the product was extracted into ethyl acetate (3 x 20 ml) and the solvent removed under reduced pressure to yield the title compound as a white powder. Crystals suitable for x-ray analysis where obtained by slow evaporation of hexane and dicloromethane mixture (9:1; 2 ml) at 4 °C.

1H NMR (600 MHz): 2.60 (s, 6H,2 x Methyl), 3.54 (s, 6H, 2 x methoxy), 7.24 (m, 2H, aromatic-H), 7.39 (m, 3H, aromatic-H).

13C NMR (150 MHz): 23.12, 52.35, 126.89, 126.87, 128.38, 128.68, 136.56, 146.41, 155.72, 168.59. m.p. 130–131 °C

Refinement

H atoms were positioned geometrically and allowed to ride on their parent atoms, with Uiso(H) = 1.2Ueq(C) with a C—H distance of 0.95. The methyl H atoms were derived from difference maps (HFIX 137) and refined with Uiso(H) = 1.5Ueq(C) and C—H 0.98 Å.

Figures

Fig. 1.

Fig. 1.

Diamond representation of the title compound, showing the numbering scheme and displacement ellipsoids (50% probability).

Crystal data

C17H17NO4 F(000) = 632
Mr = 299.32 Dx = 1.299 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
a = 16.0732 (4) Å Cell parameters from 6764 reflections
b = 7.2497 (2) Å θ = 3.1–28.2°
c = 13.1339 (3) Å µ = 0.09 mm1
β = 91.003 (1)° T = 100 K
V = 1530.20 (7) Å3 Plate, colourless
Z = 4 0.42 × 0.36 × 0.18 mm

Data collection

Bruker APEXII CCD diffractometer 3132 reflections with I > 2σ(I)
graphite Rint = 0.036
φ and ω scans θmax = 28.3°, θmin = 1.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004) h = −19→21
Tmin = 0.962, Tmax = 0.984 k = −9→9
26541 measured reflections l = −17→16
3782 independent reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042 Hydrogen site location: geom and difmap
wR(F2) = 0.114 H-atom parameters constrained
S = 1.05 w = 1/[σ2(Fo2) + (0.0581P)2 + 0.5155P] where P = (Fo2 + 2Fc2)/3
3782 reflections (Δ/σ)max = 0.001
203 parameters Δρmax = 0.31 e Å3
0 restraints Δρmin = −0.25 e Å3

Special details

Experimental. The intensity data was collected on a Bruker X8 ApexII 4 K Kappa CCD diffractometer using an exposure time of 10 s/frame. A total of 1659 frames were collected with a frame width of 0.5° covering up to θ = 28.26° with 99.9% completeness accomplished.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 0.31920 (7) −0.26904 (16) 0.51421 (9) 0.0155 (2)
C2 0.32461 (7) −0.11146 (15) 0.57614 (9) 0.0143 (2)
C3 0.25177 (7) −0.02892 (15) 0.61091 (8) 0.0135 (2)
C4 0.17589 (7) −0.11187 (15) 0.58352 (9) 0.0143 (2)
C5 0.17515 (7) −0.27106 (16) 0.52304 (9) 0.0151 (2)
C6 0.39463 (8) −0.36532 (18) 0.47394 (11) 0.0233 (3)
H6A 0.4141 −0.4576 0.5234 0.035*
H6B 0.4388 −0.2748 0.4627 0.035*
H6C 0.3802 −0.4263 0.4094 0.035*
C7 0.09654 (8) −0.37102 (17) 0.49311 (10) 0.0209 (3)
H7A 0.1002 −0.413 0.4224 0.031*
H7B 0.049 −0.2875 0.4995 0.031*
H7C 0.0892 −0.4777 0.5379 0.031*
C8 0.25268 (7) 0.13135 (15) 0.68224 (9) 0.0140 (2)
C9 0.27156 (7) 0.30990 (16) 0.65095 (9) 0.0176 (2)
H9 0.2869 0.3325 0.5826 0.021*
C10 0.26785 (8) 0.45503 (16) 0.71995 (9) 0.0196 (3)
H10 0.28 0.5769 0.6982 0.023*
C11 0.24653 (7) 0.42316 (17) 0.82023 (9) 0.0188 (3)
H11 0.2441 0.5229 0.867 0.023*
C12 0.22882 (8) 0.24556 (18) 0.85221 (9) 0.0213 (3)
H12 0.2148 0.2232 0.9211 0.026*
C13 0.23166 (8) 0.10024 (17) 0.78347 (9) 0.0188 (3)
H13 0.2192 −0.0213 0.8055 0.023*
C14 0.09598 (7) −0.02242 (16) 0.61348 (9) 0.0168 (2)
C15 −0.02859 (8) −0.0577 (2) 0.70350 (13) 0.0324 (3)
H15A −0.0238 0.0649 0.7345 0.049*
H15B −0.0548 −0.1425 0.7514 0.049*
H15C −0.0627 −0.0498 0.6411 0.049*
C16 0.40794 (7) −0.03409 (16) 0.60534 (9) 0.0163 (2)
C17 0.53414 (8) −0.0953 (2) 0.69408 (12) 0.0314 (3)
H17A 0.568 −0.0971 0.6327 0.047*
H17B 0.5573 −0.1822 0.7442 0.047*
H17C 0.5344 0.0293 0.723 0.047*
N1 0.24576 (6) −0.34462 (13) 0.48819 (7) 0.0154 (2)
O1 0.07254 (6) 0.12423 (12) 0.58103 (8) 0.0250 (2)
O2 0.05370 (6) −0.12553 (12) 0.67903 (7) 0.0227 (2)
O3 0.43443 (6) 0.11142 (12) 0.57660 (8) 0.0236 (2)
O4 0.44906 (6) −0.14856 (13) 0.66776 (7) 0.0255 (2)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.0148 (5) 0.0143 (5) 0.0174 (5) −0.0007 (4) 0.0027 (4) 0.0020 (4)
C2 0.0138 (5) 0.0132 (5) 0.0159 (5) −0.0015 (4) 0.0001 (4) 0.0024 (4)
C3 0.0154 (5) 0.0111 (5) 0.0139 (5) −0.0003 (4) 0.0003 (4) 0.0026 (4)
C4 0.0141 (5) 0.0131 (5) 0.0158 (5) 0.0002 (4) 0.0002 (4) 0.0020 (4)
C5 0.0150 (5) 0.0136 (5) 0.0166 (5) −0.0012 (4) −0.0008 (4) 0.0017 (4)
C6 0.0168 (6) 0.0202 (6) 0.0331 (7) −0.0010 (5) 0.0066 (5) −0.0062 (5)
C7 0.0157 (6) 0.0183 (6) 0.0286 (7) −0.0023 (5) −0.0019 (5) −0.0055 (5)
C8 0.0126 (5) 0.0137 (5) 0.0157 (5) −0.0002 (4) −0.0015 (4) −0.0002 (4)
C9 0.0213 (6) 0.0154 (6) 0.0162 (5) −0.0018 (4) 0.0009 (4) 0.0014 (4)
C10 0.0232 (6) 0.0131 (5) 0.0223 (6) −0.0020 (5) −0.0023 (5) 0.0001 (5)
C11 0.0183 (6) 0.0181 (6) 0.0197 (6) 0.0012 (4) −0.0024 (5) −0.0056 (4)
C12 0.0261 (6) 0.0228 (6) 0.0151 (5) −0.0013 (5) 0.0012 (5) −0.0001 (5)
C13 0.0232 (6) 0.0153 (5) 0.0179 (6) −0.0022 (5) 0.0001 (5) 0.0024 (4)
C14 0.0142 (5) 0.0155 (5) 0.0207 (6) −0.0016 (4) −0.0015 (4) −0.0030 (4)
C15 0.0200 (7) 0.0269 (7) 0.0508 (9) 0.0028 (5) 0.0155 (6) 0.0014 (6)
C16 0.0135 (5) 0.0167 (6) 0.0189 (6) 0.0001 (4) 0.0020 (4) −0.0020 (4)
C17 0.0180 (6) 0.0337 (8) 0.0422 (8) −0.0033 (5) −0.0109 (6) 0.0044 (6)
N1 0.0169 (5) 0.0133 (5) 0.0160 (5) −0.0006 (4) 0.0007 (4) 0.0009 (4)
O1 0.0198 (5) 0.0183 (4) 0.0368 (5) 0.0049 (3) 0.0015 (4) 0.0042 (4)
O2 0.0173 (4) 0.0203 (4) 0.0308 (5) 0.0013 (3) 0.0084 (4) 0.0020 (4)
O3 0.0174 (4) 0.0173 (4) 0.0361 (5) −0.0043 (3) 0.0001 (4) 0.0031 (4)
O4 0.0178 (4) 0.0254 (5) 0.0330 (5) −0.0043 (4) −0.0084 (4) 0.0081 (4)

Geometric parameters (Å, °)

C1—N1 1.3402 (15) C9—H9 0.95
C1—C2 1.4042 (16) C10—C11 1.3861 (17)
C1—C6 1.5032 (16) C10—H10 0.95
C2—C3 1.3986 (15) C11—C12 1.3854 (18)
C2—C16 1.4958 (16) C11—H11 0.95
C3—C4 1.4011 (15) C12—C13 1.3887 (17)
C3—C8 1.4924 (15) C12—H12 0.95
C4—C5 1.4009 (16) C13—H13 0.95
C4—C14 1.4977 (16) C14—O1 1.2034 (15)
C5—N1 1.3417 (15) C14—O2 1.3350 (15)
C5—C7 1.5030 (16) C15—O2 1.4524 (15)
C6—H6A 0.98 C15—H15A 0.98
C6—H6B 0.98 C15—H15B 0.98
C6—H6C 0.98 C15—H15C 0.98
C7—H7A 0.98 C16—O3 1.2009 (15)
C7—H7B 0.98 C16—O4 1.3338 (15)
C7—H7C 0.98 C17—O4 1.4568 (15)
C8—C9 1.3932 (16) C17—H17A 0.98
C8—C13 1.3959 (16) C17—H17B 0.98
C9—C10 1.3906 (17) C17—H17C 0.98
N1—C1—C2 121.72 (10) C11—C10—C9 120.48 (11)
N1—C1—C6 115.63 (10) C11—C10—H10 119.8
C2—C1—C6 122.64 (11) C9—C10—H10 119.8
C3—C2—C1 119.57 (10) C12—C11—C10 119.90 (11)
C3—C2—C16 120.45 (10) C12—C11—H11 120
C1—C2—C16 119.98 (10) C10—C11—H11 120
C2—C3—C4 117.54 (10) C11—C12—C13 119.92 (11)
C2—C3—C8 122.61 (10) C11—C12—H12 120
C4—C3—C8 119.62 (10) C13—C12—H12 120
C5—C4—C3 119.86 (10) C12—C13—C8 120.52 (11)
C5—C4—C14 120.45 (10) C12—C13—H13 119.7
C3—C4—C14 119.57 (10) C8—C13—H13 119.7
N1—C5—C4 121.47 (10) O1—C14—O2 124.29 (11)
N1—C5—C7 115.56 (10) O1—C14—C4 123.65 (11)
C4—C5—C7 122.97 (10) O2—C14—C4 112.06 (10)
C1—C6—H6A 109.5 O2—C15—H15A 109.5
C1—C6—H6B 109.5 O2—C15—H15B 109.5
H6A—C6—H6B 109.5 H15A—C15—H15B 109.5
C1—C6—H6C 109.5 O2—C15—H15C 109.5
H6A—C6—H6C 109.5 H15A—C15—H15C 109.5
H6B—C6—H6C 109.5 H15B—C15—H15C 109.5
C5—C7—H7A 109.5 O3—C16—O4 124.40 (11)
C5—C7—H7B 109.5 O3—C16—C2 124.73 (11)
H7A—C7—H7B 109.5 O4—C16—C2 110.87 (10)
C5—C7—H7C 109.5 O4—C17—H17A 109.5
H7A—C7—H7C 109.5 O4—C17—H17B 109.5
H7B—C7—H7C 109.5 H17A—C17—H17B 109.5
C9—C8—C13 119.26 (11) O4—C17—H17C 109.5
C9—C8—C3 122.55 (10) H17A—C17—H17C 109.5
C13—C8—C3 118.18 (10) H17B—C17—H17C 109.5
C10—C9—C8 119.91 (11) C1—N1—C5 119.80 (10)
C10—C9—H9 120 C14—O2—C15 115.40 (10)
C8—C9—H9 120 C16—O4—C17 115.72 (10)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C6—H6B···O3i 0.98 2.42 3.3825 (15) 167.
C7—H7B···O1ii 0.98 2.5 3.3826 (15) 149.
C13—H13···N1iii 0.95 2.62 3.2701 (16) 126.
C15—H15A···O2iv 0.98 2.56 3.5187 (17) 165.

Symmetry codes: (i) −x+1, −y, −z+1; (ii) −x, −y, −z+1; (iii) x, −y−1/2, z+1/2; (iv) −x, y+1/2, −z+3/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: FK2046).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811049865/fk2046sup1.cif

e-67-o3481-sup1.cif (22.9KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811049865/fk2046Isup2.hkl

e-67-o3481-Isup2.hkl (181.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811049865/fk2046Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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