Abstract
Antibodies against the isolated subunits alpha, beta, and beta' of DNA-dependent RNA polymerase from E. coli have been prepared. They have been used to compare the extent of antibody-binding, as measured by complement fixation, to the isolated subunits and to the intact enzyme, in the absence and presence of ligands, such as inhibitors, nucleotides, nucleosides, oligo- and poly-nucleotides, and DNA of different composition. In many cases the results show a subunit-specific dependence of complement fixation upon the presence of a ligand and suggest a functional topography of the interaction between the subunits alpha, beta, and beta' of RNA polymerase and defined nucleotide sequences and small ligands.
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Selected References
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- Bucci E., Bowman D. E. Immunological aspects of the binding of substrate analogues and polypeptide inhibitors to alpha-chymotrypsin. Immunochemistry. 1970 Mar;7(3):289–303. doi: 10.1016/0019-2791(70)90167-9. [DOI] [PubMed] [Google Scholar]
- Burgess R. R., Jendrisak J. J. A procedure for the rapid, large-scall purification of Escherichia coli DNA-dependent RNA polymerase involving Polymin P precipitation and DNA-cellulose chromatography. Biochemistry. 1975 Oct 21;14(21):4634–4638. doi: 10.1021/bi00692a011. [DOI] [PubMed] [Google Scholar]
- Cashel M. Regulation of bacterial ppGpp and pppGpp. Annu Rev Microbiol. 1975;29:301–318. doi: 10.1146/annurev.mi.29.100175.001505. [DOI] [PubMed] [Google Scholar]
- Cassani G., Burgess R. R., Goodman H. M., Gold L. Inhibition of RNA polymerase by streptolydigin. Nat New Biol. 1971 Apr 14;230(15):197–200. doi: 10.1038/newbio230197a0. [DOI] [PubMed] [Google Scholar]
- Coggins J. R., Lumsden J., Malcolm A. D. A study of the quaternary structure of Escherichia coli RNA polymerase using bis(imido esters). Biochemistry. 1977 Mar 22;16(6):1111–1116. doi: 10.1021/bi00625a013. [DOI] [PubMed] [Google Scholar]
- Dubochet J., Ducommun M., Zollinger M., Kellenberger E. A new preparation method for dark-field electron microscopy of biomacromolecules. J Ultrastruct Res. 1971 Apr;35(1):147–167. doi: 10.1016/s0022-5320(71)80148-x. [DOI] [PubMed] [Google Scholar]
- Fukuda R., Ishihama A. Subunits of RNA polymerase in function and structure; Maturation in vitro of core enzyme from Escherichia coli. J Mol Biol. 1974 Aug 15;87(3):523–540. doi: 10.1016/0022-2836(74)90102-8. [DOI] [PubMed] [Google Scholar]
- Heil A., Zillig W. Reconstitution of bacterial DNA-dependent RNA-polymerase from isolated subunits as a tool for the elucidation of the role of the subunits in transcription. FEBS Lett. 1970 Dec;11(3):165–168. doi: 10.1016/0014-5793(70)80519-1. [DOI] [PubMed] [Google Scholar]
- Hillel Z., Wu C. W. Subunit topography of RNA polymerase from Escherichia coli. A cross-linking study with bifunctional reagents. Biochemistry. 1977 Jul 26;16(15):3334–3342. doi: 10.1021/bi00634a008. [DOI] [PubMed] [Google Scholar]
- Iwakura Y., Ishihama A., Yura T. RNA polymerase mutants of Escherichia coli. Streptolydigin resistance and its relation to rifampicin resistance. Mol Gen Genet. 1973 Mar 1;121(2):181–196. doi: 10.1007/BF00277531. [DOI] [PubMed] [Google Scholar]
- Khachatourians G. G., Tipper D. J. In vivo effect of thiolutin on cell growth and macromolecular synthesis in Escherichia coli. Antimicrob Agents Chemother. 1974 Sep;6(3):304–310. doi: 10.1128/aac.6.3.304. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Lathe R. RNA polymerase of Escherichia coli. Curr Top Microbiol Immunol. 1978;83:37–91. doi: 10.1007/978-3-642-67087-9_2. [DOI] [PubMed] [Google Scholar]
- Lill H. R., Hartmann G. R. Digestion with matrix-bound proteases as a possible probe for the topography of the DNA-dependent RNA polymerase from Escherichia coli. Eur J Biochem. 1975 May;54(1):45–53. doi: 10.1111/j.1432-1033.1975.tb04112.x. [DOI] [PubMed] [Google Scholar]
- Lill U. I., Behrendt E. M., Hartmann G. R. Hybridization in vitro of subunits of the DNA-dependent RNA polymerase from Escherichia coli and Micrococcus luteus. Eur J Biochem. 1975 Apr 1;52(3):411–420. doi: 10.1111/j.1432-1033.1975.tb04009.x. [DOI] [PubMed] [Google Scholar]
- Miller J. A., Serio G. F., Howard R. A., Bear J. L., Evans J. E., Kimball A. P. Subunit localizations of zinc(II) in DNA-dependent RNA polymerase from Escherichia coli B. Biochim Biophys Acta. 1979 Aug 28;579(2):291–297. doi: 10.1016/0005-2795(79)90056-4. [DOI] [PubMed] [Google Scholar]
- Pao C. C., Gallant J. A new nucleotide involved in the stringent response in Escherichia coli. Guanosine 5'-diphosphate-3'-monophosphate. J Biol Chem. 1979 Feb 10;254(3):688–692. [PubMed] [Google Scholar]
- Pilz I., Kratky O., Rabussay D. Studies on the conformation of DNA-dependent RNA polymerase in solution by small-angle x-ray measurements. Eur J Biochem. 1972 Jul 13;28(2):205–220. doi: 10.1111/j.1432-1033.1972.tb01904.x. [DOI] [PubMed] [Google Scholar]
- REICHLIN M., BUCCI E., ANTONINI E., WYMAN J., ROSSI-FANELLI A. THE IMMUNOCHEMICAL DIFFERENCE BETWEEN HORSE OXY- AND DEOXYHAEMOGLOBIN. J Mol Biol. 1964 Sep;9:785–788. doi: 10.1016/s0022-2836(64)80184-4. [DOI] [PubMed] [Google Scholar]
- REICHLIN M., BUCCI E., WYMAN J., ANTONINI E., ROSSI-FANELLI A. THE ROLE OF ALPHA AND BETA CHAINS IN THE IMMUNOCHEMICAL DIFFERENCE BETWEEN OXY AND DEOXY HUMAN HAEMOGLOBIN. J Mol Biol. 1965 Apr;11:775–784. doi: 10.1016/s0022-2836(65)80035-3. [DOI] [PubMed] [Google Scholar]
- Scherer G. E., Walkinshaw M. D., Arnott S. A computer aided oligonucleotide analysis provides a model sequence for RNA polymerase-promoter recognition in E.coli. Nucleic Acids Res. 1978 Oct;5(10):3759–3773. doi: 10.1093/nar/5.10.3759. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Siebenlist U. RNA polymerase unwinds an 11-base pair segment of a phage T7 promoter. Nature. 1979 Jun 14;279(5714):651–652. doi: 10.1038/279651a0. [DOI] [PubMed] [Google Scholar]
- Simpson R. B. The molecular topography of RNA polymerase-promoter interaction. Cell. 1979 Oct;18(2):277–285. doi: 10.1016/0092-8674(79)90047-3. [DOI] [PubMed] [Google Scholar]
- Sivasubramanian N., Jayaraman R. Thiolutin resistant mutants of Escherichia coli are they RNA chain initiation mutants? Mol Gen Genet. 1976 Apr 23;145(1):89–96. doi: 10.1007/BF00331562. [DOI] [PubMed] [Google Scholar]
- Spassky A., Busby S. J., Danchin A., Buc H. On the binding of tRNA to Escherichia coli RNA polymerase. Eur J Biochem. 1979 Aug 15;99(1):187–201. doi: 10.1111/j.1432-1033.1979.tb13245.x. [DOI] [PubMed] [Google Scholar]
- Stender W. Conformational changes of Escherichia coli RNA polymerase on binding of templates. FEBS Lett. 1979 Jul 1;103(1):57–60. doi: 10.1016/0014-5793(79)81249-1. [DOI] [PubMed] [Google Scholar]
- Stender W., Palm D. Quaternary structure of DNA-dependent RNA polymerase from Escherichia coli. Measurement of distances by fluorescence energy transfer. Biochim Biophys Acta. 1979 Jun 19;578(2):337–345. doi: 10.1016/0005-2795(79)90164-8. [DOI] [PubMed] [Google Scholar]
- Stender W., Scheit K. H. Dissociation kinetics of complexes between the antibiotic rifamycin and DNA-dependent RNA polymerase from Escherichia coli. Eur J Biochem. 1976 Jun 1;65(2):333–339. doi: 10.1111/j.1432-1033.1976.tb10346.x. [DOI] [PubMed] [Google Scholar]
- Stender W., Stütz A. A., Scheit K. H. The modification of DNA-dependent RNA polymerase from Escherichia coli by an alkylating derivative of rifamycin SV. Eur J Biochem. 1975 Aug 1;56(1):129–136. doi: 10.1111/j.1432-1033.1975.tb02215.x. [DOI] [PubMed] [Google Scholar]
- Tafler S. W., Setlow P., Levine L. Serological relatedness of bacterial deoxyribonucleic acid polymerases. J Bacteriol. 1973 Jan;113(1):18–23. doi: 10.1128/jb.113.1.18-23.1973. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Travers A. Modulation of RNA polymerase specificity by ppGpp. Mol Gen Genet. 1976 Aug 19;147(2):225–232. doi: 10.1007/BF00267575. [DOI] [PubMed] [Google Scholar]
- Travers A. RNA polymerase specificity and the control of growth. Nature. 1976 Oct 21;263(5579):641–646. doi: 10.1038/263641a0. [DOI] [PubMed] [Google Scholar]
- Wu C. W., Yarbrough L. R., Wu F. Y., Hillel Z. Spatial relationship of the sigma subunit and the rifampicin binding site in RNA polymerase of Escherichia coli. Biochemistry. 1976 May 18;15(10):2097–2104. doi: 10.1021/bi00655a011. [DOI] [PubMed] [Google Scholar]
- Yarbrough L. R., Hurwitz J. The isolation of subunits of deoxyribonucleic acid-dependent ribonucleic acid polymerase of Escherichia coli. J Biol Chem. 1974 Sep 10;249(17):5400–5404. [PubMed] [Google Scholar]
- van Ooyen A. J., Gruber M., Jorgensen P. The mechanism of action of ppGpp on rRNA synthesis in vitro. Cell. 1976 May;8(1):123–128. doi: 10.1016/0092-8674(76)90193-8. [DOI] [PubMed] [Google Scholar]
- von Fellenberg R., Bethell M. R., Jones M. E., Levine L. Immunological studies of aspartate transcarbamylase. II. Effect of ligands on the conformation of the enzyme. Biochemistry. 1968 Dec;7(12):4322–4329. doi: 10.1021/bi00852a026. [DOI] [PubMed] [Google Scholar]
