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. 1980 Sep 11;8(17):3975–3981. doi: 10.1093/nar/8.17.3975

Role of interaction energy in the specificity of transcription. I-The Watson Crick G-C base pair template.

N K Sanyal, U Kumar, M Roychoudhury
PMCID: PMC324208  PMID: 7443519

Abstract

The purpose of this work is to show that the selectivity of the nucleotide bases in RNA transcription c an be inferred, in principle, from the DNA base pair - RNA base interaction. The catalytic role of enzymes in this process is, therefore, only to form the sugar - phosphate backbone. A systematic study for the evaluation of the interaction energy of the DNA base pair with the enterant RNA bases have been undertaken to elucidate the aforesaid mechanism. Electrostatic hard sphere approximation of Nash and Bradley 1 has been employed. Non bonded induced dipole and London dispersion forces are not taken into account. The present communication gives the results of computations of the interaction energy of the four RNA bases. The results have been discussed with reference to Stent's and Zubay's schemes of RNA transcription.

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Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Pullman B., Claverie P., Caillet J. Interaction energies in hydrogen-bonded purine-pyrimidine triplets. Proc Natl Acad Sci U S A. 1967 Jun;57(6):1663–1669. doi: 10.1073/pnas.57.6.1663. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Pullman B., Pullman A. Quantum-mechanical investigations of the electronic structure of nucleic acids and their constituents. Prog Nucleic Acid Res Mol Biol. 1969;9:327–402. doi: 10.1016/s0079-6603(08)60772-2. [DOI] [PubMed] [Google Scholar]
  3. STENT G. S. Mating in the reproduction of bacterial viruses. Adv Virus Res. 1958;5:95–149. doi: 10.1016/s0065-3527(08)60672-7. [DOI] [PubMed] [Google Scholar]
  4. Sanyal N. K., Kumar U., Sinha R. P. Energy of association of uracil with Watson-Crick A-T pair. J Theor Biol. 1977 May 7;66(1):39–46. doi: 10.1016/0022-5193(77)90310-1. [DOI] [PubMed] [Google Scholar]

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