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. 1980 Dec 11;8(23):5635–5647. doi: 10.1093/nar/8.23.5635

Nucleotide sequences at the 5'-termini of the alfalfa mosaic virus RNAs and the intercistronic junction in RNA 3.

E C Koper-Zwarthoff, F T Brederode, G Veeneman, J H van Boom, J F Bol
PMCID: PMC324331  PMID: 6927843

Abstract

Nucleotide sequences at the 5'-termini of the alfalfa mosaic virus genomic RNAs and the intercistronic junction in RNA 3 were deduced and compared to identify possible common recognition signals for replicating enzymes in the corresponding minus-stranded viral RNAs. Homology between the 5'-terminal sequences is less than 11 nucleotides and no complementarity with the homologous sequence occurring at the 3'-end of the viral RNAs was observed. Homology between the 5'-terminus and intercistronic region in RNA 3 is compatible with the synthesis of subgenomic RNA 4 by internal initiation of transcription on the RNA 3 minus strands. The sequence around the intercistronic junction can be folded into a very stable secondary structure.

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Selected References

These references are in PubMed. This may not be the complete list of references from this article.

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