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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Oct 12;67(Pt 11):o2936. doi: 10.1107/S1600536811041407

5-Chloro-1,3-dimethyl-1H-pyrazole-4-carbaldehyde

Yong-Jun Shen a, Mei Xu b, Chong-Guang Fan a,*
PMCID: PMC3247348  PMID: 22219966

Abstract

In the title compound, C6H7ClN2O, the mol­ecules are situated on mirror planes, so H atoms of two methyl groups were treated as rotationally disordered over two orientations each. The crystal packing exhibits weak inter­molecular C—H⋯O inter­actions and short Cl⋯N contacts of 3.046 (2) Å.

Related literature

For the biological activity of pyrazole derivatives, see: Hamaguchi et al. (1995); Motoba et al. (1992). For a related structure, see: Yokoyama et al. (2004).graphic file with name e-67-o2936-scheme1.jpg

Experimental

Crystal data

  • C6H7ClN2O

  • M r = 158.59

  • Orthorhombic, Inline graphic

  • a = 13.167 (9) Å

  • b = 6.463 (5) Å

  • c = 8.190 (6) Å

  • V = 696.9 (8) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.47 mm−1

  • T = 113 K

  • 0.24 × 0.22 × 0.18 mm

Data collection

  • Rigaku Saturn724 CCD diffractometer

  • Absorption correction: multi-scan (CrystalClear; Rigaku, 2008) T min = 0.895, T max = 0.920

  • 7166 measured reflections

  • 897 independent reflections

  • 726 reflections with I > 2σ(I)

  • R int = 0.049

Refinement

  • R[F 2 > 2σ(F 2)] = 0.027

  • wR(F 2) = 0.081

  • S = 1.05

  • 897 reflections

  • 63 parameters

  • H-atom parameters constrained

  • Δρmax = 0.36 e Å−3

  • Δρmin = −0.25 e Å−3

Data collection: CrystalClear (Rigaku, 2008); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811041407/cv5167sup1.cif

e-67-o2936-sup1.cif (13.7KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811041407/cv5167Isup2.hkl

e-67-o2936-Isup2.hkl (44.6KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811041407/cv5167Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C5—H5A⋯O1i 0.98 2.58 3.220 (3) 123

Symmetry code: (i) Inline graphic.

Acknowledgments

This work was supported by the Scientific Research Foundation for Talent Introduction of Nantong University (grant No. 03080226).

supplementary crystallographic information

Comment

The pyrazole ring is a prominent heterocyclic scaffold in numerous bioactive molecules. Many pyrazole-based compounds are reported to possess diverse biological activities (Motoba et al., 1992; Hamaguchi et al., 1995). The title compound (I), is an important intermediate for the synthesis of agrochemicals and drugs. Details of its crystal structure may be helpful for the design of novel bioactive molecules.

In (I) (Fig. 1), all bond lengths and angles are normal and comparable with those observed in ethyl 4-formyl-1,3-dimethylpyrazole-5-carboxylate (Yokoyama et al., 2004). All molecules in (I) are situated on mirror planes. The crystal packing exhibits weak intermolecular C—H···O interactions (Table 1) and short Cl···N contacts of 3.046 (2) Å.

Experimental

To a well stirred cold solution of DMF(60 mmol) was added dropwise phosphoryl trichloride (90 mmol). The resulting mixture was stirred at 273 K for another 20 min. To the above solution was added 1,3-dimethyl- 1H-pyrazol-5(4H)-one (30 mmol), then it was heated to 363 k for 4 h. Completion of the reaction was checked by TLC, the reaction mixture was cooled and poured into cold water(100 ml). The pH of the mixture was adjusted to 7 by sodium hydroxide solution. The resulting solution was extracted with ethyl acetate (3 * 30 ml). The organic layer was dried over anhydrous sodium sulfate. The solvent was evaporated under reduced pressure, then the residue was recrystallized from ethyl acetate/petroleum ether to give a colourless crystal.

Refinement

All H atoms were placed in calculated positions, with C–H = 0.95, and 0.98 ° A, and included in the final cycles of refinement using a riding model, with Uiso(H) = 1.2Ueq(C). H atoms of two methyl groups were treated as rotationally disordered over two orientations each with occupancies fixed to 0.5.

Figures

Fig. 1.

Fig. 1.

The molecular structure of (I) showing the atomic labels and 30% probability displacement ellipsoids.

Crystal data

C6H7ClN2O F(000) = 328
Mr = 158.59 Dx = 1.511 Mg m3
Orthorhombic, Pnma Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2n Cell parameters from 2460 reflections
a = 13.167 (9) Å θ = 2.5–27.8°
b = 6.463 (5) Å µ = 0.47 mm1
c = 8.190 (6) Å T = 113 K
V = 696.9 (8) Å3 Prism, colourless
Z = 4 0.24 × 0.22 × 0.18 mm

Data collection

Rigaku Saturn724 CCD diffractometer 897 independent reflections
Radiation source: rotating anode 726 reflections with I > 2σ(I)
multilayer Rint = 0.049
Detector resolution: 14.22 pixels mm-1 θmax = 27.8°, θmin = 2.9°
ω and φ scans h = −16→17
Absorption correction: multi-scan (CrystalClear; Rigaku, 2008) k = −8→8
Tmin = 0.895, Tmax = 0.920 l = −10→10
7166 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.027 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.081 H-atom parameters constrained
S = 1.05 w = 1/[σ2(Fo2) + (0.0516P)2] where P = (Fo2 + 2Fc2)/3
897 reflections (Δ/σ)max = 0.002
63 parameters Δρmax = 0.36 e Å3
0 restraints Δρmin = −0.25 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq Occ. (<1)
Cl1 0.41884 (3) 0.2500 0.25597 (5) 0.01825 (17)
O1 0.48840 (10) 0.2500 −0.28470 (15) 0.0222 (3)
N1 0.62098 (12) 0.2500 0.23171 (16) 0.0159 (4)
N2 0.70015 (10) 0.2500 0.12266 (17) 0.0166 (3)
C1 0.53190 (11) 0.2500 0.1537 (2) 0.0146 (4)
C2 0.54995 (11) 0.2500 −0.0124 (2) 0.0141 (4)
C3 0.65799 (11) 0.2500 −0.0242 (2) 0.0142 (4)
C4 0.72306 (11) 0.2500 −0.1739 (2) 0.0178 (4)
H4A 0.7015 0.3620 −0.2468 0.027* 0.50
H4B 0.7161 0.1170 −0.2303 0.027* 0.50
H4C 0.7942 0.2710 −0.1426 0.027* 0.50
C5 0.63988 (14) 0.2500 0.4067 (2) 0.0234 (4)
H5A 0.5928 0.3457 0.4603 0.035* 0.50
H5B 0.7099 0.2942 0.4276 0.035* 0.50
H5C 0.6297 0.1102 0.4500 0.035* 0.50
C6 0.47278 (12) 0.2500 −0.1387 (2) 0.0167 (4)
H6 0.4039 0.2500 −0.1041 0.020*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cl1 0.0131 (3) 0.0215 (3) 0.0202 (3) 0.000 0.00588 (14) 0.000
O1 0.0198 (7) 0.0291 (8) 0.0177 (6) 0.000 −0.0013 (5) 0.000
N1 0.0138 (8) 0.0210 (8) 0.0130 (7) 0.000 0.0020 (5) 0.000
N2 0.0119 (7) 0.0226 (8) 0.0153 (7) 0.000 0.0035 (6) 0.000
C1 0.0119 (8) 0.0145 (9) 0.0175 (8) 0.000 0.0017 (6) 0.000
C2 0.0124 (8) 0.0137 (8) 0.0163 (8) 0.000 0.0001 (6) 0.000
C3 0.0125 (8) 0.0137 (9) 0.0163 (8) 0.000 0.0000 (6) 0.000
C4 0.0135 (8) 0.0239 (10) 0.0159 (8) 0.000 0.0008 (6) 0.000
C5 0.0237 (9) 0.0354 (12) 0.0111 (9) 0.000 0.0000 (7) 0.000
C6 0.0119 (8) 0.0182 (9) 0.0199 (8) 0.000 −0.0006 (7) 0.000

Geometric parameters (Å, °)

Cl1—C1 1.7081 (18) C3—C4 1.495 (2)
O1—C6 1.213 (2) C4—H4A 0.9800
N1—C1 1.336 (2) C4—H4B 0.9800
N1—N2 1.373 (2) C4—H4C 0.9800
N1—C5 1.455 (2) C5—H5A 0.9800
N2—C3 1.325 (2) C5—H5B 0.9800
C1—C2 1.381 (2) C5—H5C 0.9800
C2—C3 1.426 (2) C6—H6 0.9500
C2—C6 1.450 (2)
C1—N1—N2 110.83 (14) C3—C4—H4B 109.5
C1—N1—C5 128.43 (15) H4A—C4—H4B 109.5
N2—N1—C5 120.74 (15) C3—C4—H4C 109.5
C3—N2—N1 105.82 (13) H4A—C4—H4C 109.5
N1—C1—C2 108.67 (14) H4B—C4—H4C 109.5
N1—C1—Cl1 122.06 (14) N1—C5—H5A 109.5
C2—C1—Cl1 129.27 (13) N1—C5—H5B 109.5
C1—C2—C3 103.80 (14) H5A—C5—H5B 109.5
C1—C2—C6 125.60 (15) N1—C5—H5C 109.5
C3—C2—C6 130.61 (15) H5A—C5—H5C 109.5
N2—C3—C2 110.88 (14) H5B—C5—H5C 109.5
N2—C3—C4 120.27 (14) O1—C6—C2 125.74 (15)
C2—C3—C4 128.84 (15) O1—C6—H6 117.1
C3—C4—H4A 109.5 C2—C6—H6 117.1
C1—N1—N2—C3 0.0 Cl1—C1—C2—C6 0.0
C5—N1—N2—C3 180.0 N1—N2—C3—C2 0.0
N2—N1—C1—C2 0.0 N1—N2—C3—C4 180.0
C5—N1—C1—C2 180.0 C1—C2—C3—N2 0.0
N2—N1—C1—Cl1 180.0 C6—C2—C3—N2 180.0
C5—N1—C1—Cl1 0.0 C1—C2—C3—C4 180.0
N1—C1—C2—C3 0.0 C6—C2—C3—C4 0.0
Cl1—C1—C2—C3 180.0 C1—C2—C6—O1 180.0
N1—C1—C2—C6 180.0 C3—C2—C6—O1 0.0

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C5—H5A···O1i 0.98 2.58 3.220 (3) 123

Symmetry codes: (i) x, y, z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: CV5167).

References

  1. Hamaguchi, H., Kajihara, O. & Katoh, M. (1995). J. Pestic. Sci. 20, 173–175.
  2. Motoba, K., Suzuki, T. & Uchida, M. (1992). Pestic. Biochem. Physiol. 43, 37–44.
  3. Rigaku (2008). CrystalClear Rigaku Corporation, Toyko, Japan.
  4. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  5. Yokoyama, Y., Kurimoto, Y., Saito, Y., Katsurada, M., Okada, I., Osano, Y. T., Sasaki, C., Yokoyama, Y., Tukada, H., Adachi, M., Nakamura, S., Murayama, T., Harazono, T. & Kodaira, T. (2004). Chem. Lett. 33, 106–107.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811041407/cv5167sup1.cif

e-67-o2936-sup1.cif (13.7KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811041407/cv5167Isup2.hkl

e-67-o2936-Isup2.hkl (44.6KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811041407/cv5167Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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