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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Oct 22;67(Pt 11):o2998. doi: 10.1107/S1600536811042425

1,3,3-Tribenzyl­indolin-2-one

Yufang Liu a, Bo Liu b,*, Zhenming Dong a, Shuo Jin a
PMCID: PMC3247398  PMID: 22220016

Abstract

In the title compound, C29H25NO, the dihedral angles between the indolin-2-one ring system and the three benzene rings are 62.78 (9), 31.69 (9) and 80.94 (9)°.

Related literature

For general background to the use of indoline-2-one compounds as precursors for the synthesis of anti­tumor agents, see: Wang et al. (2011). For a related structure, see: Katritzky et al. (1997).graphic file with name e-67-o2998-scheme1.jpg

Experimental

Crystal data

  • C29H25NO

  • M r = 403.50

  • Monoclinic, Inline graphic

  • a = 8.3387 (9) Å

  • b = 9.6266 (10) Å

  • c = 13.9398 (14) Å

  • β = 99.442 (2)°

  • V = 1103.8 (2) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.07 mm−1

  • T = 296 K

  • 0.30 × 0.20 × 0.20 mm

Data collection

  • Bruker SMART APEX CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.979, T max = 0.986

  • 4797 measured reflections

  • 2073 independent reflections

  • 1731 reflections with I > 2σ(I)

  • R int = 0.028

Refinement

  • R[F 2 > 2σ(F 2)] = 0.033

  • wR(F 2) = 0.076

  • S = 1.05

  • 2073 reflections

  • 281 parameters

  • 1 restraint

  • H-atom parameters constrained

  • Δρmax = 0.10 e Å−3

  • Δρmin = −0.11 e Å−3

Data collection: SMART (Siemens, 1996); cell refinement: SAINT (Siemens, 1996); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811042425/hg5107sup1.cif

e-67-o2998-sup1.cif (19.6KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811042425/hg5107Isup2.hkl

e-67-o2998-Isup2.hkl (101.9KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811042425/hg5107Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Acknowledgments

The authors are grateful to the National Science Foundation (BL, No. 21072019) for support of this work and Dr Maosen Yuan of Northwest A & F University for the data collection and structure determination.

supplementary crystallographic information

Comment

Indoline-2-one compounds have been widely explored as precursors for the synthesis of antitumor agent (Wang et al., 2011). In the course of exploring new antitumor medicine, we obtained a intermediate compound C29H25NO (I), the synthesis and structure of which are reported here.

The title compound contain four ring planes, three benzene rings and one indoline-2-one ring. The interplanar dihedral angle between the indolin-2-one ring plane and the three benzene ring planes are 62.78 (9)°, 31.69 (9)° and 80.94 (9)\ respectively.

The molecules of (I) crystallize in the space group P21 which is different from that of 3-(1,2-diphenylethylidene)indolin-2-one (P-1) (Katritzky et al. 1997).

Experimental

Indolin-2-one (0.50 g, 3.76 mmol) was dissolved in THF (20 mL) and KOH (0.80 g, 14.3 mmol) was slowly added. After heating the stirred mixture at reflux temperature for 30 min, a solution of 1-(chloromethyl)benzene (2.00 g, 15.9 mmol) in THF was slowly added and the refluxing continued for 2 h. The mixture was then cooled to 333 K and poured into water (200 mL) and was extracted with chloroform and dried over Na2SO4. After removing the solvent, the crude product was purified by column chromatography on silica gel, affording the title compound (yield: 0.23 g, 15%). The compound was then dissolved in THF, and colorless crystals were formed on slow evaporation at room temperature over one week.

Refinement

All H atoms were placed in geometrically calculated positions and refined using a riding model with C—H = 0.93 Å and with Uiso(H) = 1.2Ueq(C).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound with the atom numbering scheme. Displacement ellipsoids are drawn at the 30% probability level.

Fig. 2.

Fig. 2.

The molecular packing of (I) viewed along the b axis.

Crystal data

C29H25NO F(000) = 428
Mr = 403.50 Dx = 1.214 Mg m3
Monoclinic, P21 Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2yb Cell parameters from 2492 reflections
a = 8.3387 (9) Å θ = 2.9–26.3°
b = 9.6266 (10) Å µ = 0.07 mm1
c = 13.9398 (14) Å T = 296 K
β = 99.442 (2)° Block, yellow
V = 1103.8 (2) Å3 0.30 × 0.20 × 0.20 mm
Z = 2

Data collection

Bruker SMART APEX CCD area-detector diffractometer 2073 independent reflections
Radiation source: fine-focus sealed tube 1731 reflections with I > 2σ(I)
graphite Rint = 0.028
phi and ω scans θmax = 25.1°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −9→7
Tmin = 0.979, Tmax = 0.986 k = −11→11
4797 measured reflections l = −16→16

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.033 H-atom parameters constrained
wR(F2) = 0.076 w = 1/[σ2(Fo2) + (0.0404P)2] where P = (Fo2 + 2Fc2)/3
S = 1.05 (Δ/σ)max < 0.001
2073 reflections Δρmax = 0.10 e Å3
281 parameters Δρmin = −0.11 e Å3
1 restraint Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methods Extinction coefficient: 0.085 (5)

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.3706 (2) −0.1015 (2) 0.38221 (12) 0.0693 (5)
N1 0.5070 (2) −0.1315 (2) 0.25382 (12) 0.0454 (5)
C24 0.3103 (3) −0.1520 (2) 0.09974 (16) 0.0446 (6)
C8 0.6583 (2) −0.0925 (2) 0.23014 (14) 0.0415 (5)
C3 0.7426 (3) −0.0128 (2) 0.30485 (14) 0.0393 (5)
C16 0.7158 (3) −0.0745 (3) 0.48023 (15) 0.0519 (6)
H16A 0.6343 −0.0772 0.5225 0.062*
H16B 0.7383 −0.1698 0.4640 0.062*
C10 0.4948 (3) 0.2266 (2) 0.32102 (16) 0.0464 (6)
C15 0.3277 (3) 0.2368 (3) 0.31634 (18) 0.0558 (7)
H15 0.2784 0.1947 0.3640 0.067*
C4 0.8954 (3) 0.0370 (3) 0.29641 (17) 0.0503 (6)
H4 0.9531 0.0917 0.3452 0.060*
C2 0.6413 (3) 0.0012 (2) 0.38491 (15) 0.0437 (6)
C1 0.4884 (3) −0.0807 (3) 0.34282 (16) 0.0468 (6)
C25 0.3007 (3) −0.0100 (3) 0.08741 (17) 0.0524 (6)
H25 0.3496 0.0480 0.1371 0.063*
C17 0.8693 (3) −0.0135 (2) 0.53710 (15) 0.0488 (6)
C23 0.3890 (3) −0.2184 (3) 0.19369 (17) 0.0574 (7)
H23A 0.3046 −0.2437 0.2308 0.069*
H23B 0.4424 −0.3033 0.1787 0.069*
C18 1.0215 (3) −0.0589 (3) 0.52212 (17) 0.0612 (7)
H18 1.0286 −0.1267 0.4755 0.073*
C9 0.5968 (3) 0.1523 (3) 0.40544 (16) 0.0504 (6)
H9A 0.5382 0.1527 0.4601 0.060*
H9B 0.6965 0.2043 0.4247 0.060*
C22 0.8643 (3) 0.0867 (3) 0.60759 (16) 0.0566 (7)
H22 0.7641 0.1195 0.6188 0.068*
C6 0.8748 (3) −0.0747 (3) 0.14105 (18) 0.0610 (7)
H6 0.9211 −0.0958 0.0865 0.073*
C29 0.2389 (3) −0.2353 (3) 0.02380 (18) 0.0629 (7)
H29 0.2455 −0.3314 0.0302 0.075*
C26 0.2199 (3) 0.0472 (3) 0.0027 (2) 0.0668 (8)
H26 0.2133 0.1432 −0.0042 0.080*
C7 0.7211 (3) −0.1231 (3) 0.14706 (16) 0.0547 (6)
H7 0.6619 −0.1745 0.0969 0.066*
C11 0.5633 (3) 0.2891 (3) 0.24806 (17) 0.0578 (7)
H11 0.6752 0.2844 0.2500 0.069*
C21 1.0043 (4) 0.1389 (3) 0.66143 (19) 0.0682 (8)
H21 0.9976 0.2061 0.7085 0.082*
C12 0.4683 (3) 0.3586 (3) 0.1721 (2) 0.0697 (8)
H12 0.5161 0.3982 0.1229 0.084*
C20 1.1531 (4) 0.0928 (3) 0.6464 (2) 0.0698 (8)
H20 1.2474 0.1271 0.6838 0.084*
C5 0.9610 (3) 0.0040 (3) 0.21408 (18) 0.0580 (7)
H5 1.0644 0.0355 0.2083 0.070*
C28 0.1581 (3) −0.1783 (4) −0.0613 (2) 0.0754 (9)
H28 0.1100 −0.2359 −0.1114 0.090*
C14 0.2335 (3) 0.3088 (3) 0.2416 (2) 0.0639 (7)
H14 0.1220 0.3166 0.2403 0.077*
C13 0.3036 (3) 0.3686 (3) 0.1697 (2) 0.0684 (8)
H13 0.2396 0.4160 0.1192 0.082*
C19 1.1621 (3) −0.0052 (3) 0.5751 (2) 0.0710 (8)
H19 1.2629 −0.0350 0.5628 0.085*
C27 0.1485 (3) −0.0374 (4) −0.0721 (2) 0.0730 (9)
H27 0.0942 0.0012 −0.1296 0.088*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0624 (10) 0.0862 (14) 0.0635 (10) −0.0224 (10) 0.0228 (9) −0.0056 (11)
N1 0.0469 (11) 0.0475 (12) 0.0406 (10) −0.0077 (9) 0.0037 (8) −0.0046 (9)
C24 0.0411 (12) 0.0487 (15) 0.0428 (13) −0.0069 (11) 0.0039 (10) −0.0058 (11)
C8 0.0445 (12) 0.0402 (13) 0.0387 (11) 0.0010 (11) 0.0037 (10) 0.0007 (11)
C3 0.0425 (12) 0.0363 (12) 0.0375 (11) 0.0003 (10) 0.0016 (9) 0.0013 (10)
C16 0.0670 (15) 0.0468 (14) 0.0406 (12) −0.0041 (13) 0.0048 (11) 0.0017 (12)
C10 0.0506 (14) 0.0403 (13) 0.0462 (13) 0.0024 (11) 0.0014 (11) −0.0099 (11)
C15 0.0539 (15) 0.0581 (16) 0.0539 (14) −0.0019 (13) 0.0041 (12) −0.0131 (14)
C4 0.0485 (14) 0.0491 (15) 0.0516 (14) −0.0032 (11) 0.0027 (11) 0.0018 (12)
C2 0.0498 (13) 0.0458 (14) 0.0346 (11) −0.0052 (11) 0.0048 (10) −0.0015 (11)
C1 0.0499 (13) 0.0468 (14) 0.0434 (12) −0.0058 (12) 0.0067 (11) 0.0027 (12)
C25 0.0567 (15) 0.0540 (16) 0.0462 (14) −0.0064 (12) 0.0073 (11) −0.0014 (13)
C17 0.0633 (15) 0.0434 (14) 0.0367 (11) 0.0057 (12) −0.0003 (11) 0.0033 (11)
C23 0.0633 (16) 0.0510 (16) 0.0540 (14) −0.0171 (13) −0.0019 (12) −0.0020 (13)
C18 0.0718 (17) 0.0545 (16) 0.0521 (15) 0.0139 (14) −0.0049 (13) −0.0046 (13)
C9 0.0571 (14) 0.0504 (15) 0.0425 (13) 0.0005 (12) 0.0047 (11) −0.0086 (12)
C22 0.0729 (17) 0.0547 (16) 0.0402 (13) 0.0072 (13) 0.0035 (12) −0.0010 (13)
C6 0.0639 (16) 0.0716 (18) 0.0511 (13) 0.0114 (15) 0.0203 (13) −0.0025 (14)
C29 0.0678 (17) 0.0570 (17) 0.0587 (16) −0.0054 (14) −0.0047 (13) −0.0108 (14)
C26 0.0690 (17) 0.0654 (18) 0.0652 (18) −0.0027 (15) 0.0081 (14) 0.0138 (15)
C7 0.0608 (15) 0.0583 (16) 0.0446 (12) 0.0040 (13) 0.0075 (11) −0.0074 (13)
C11 0.0532 (15) 0.0559 (16) 0.0630 (16) −0.0005 (13) 0.0061 (13) 0.0048 (14)
C21 0.095 (2) 0.0543 (16) 0.0498 (15) −0.0009 (16) −0.0057 (15) −0.0088 (14)
C12 0.0756 (19) 0.0597 (17) 0.0717 (17) 0.0039 (15) 0.0063 (15) 0.0158 (15)
C20 0.0749 (19) 0.0567 (18) 0.0686 (18) −0.0057 (15) −0.0152 (15) 0.0032 (16)
C5 0.0512 (14) 0.0616 (17) 0.0641 (16) 0.0033 (13) 0.0176 (13) 0.0075 (14)
C28 0.077 (2) 0.089 (2) 0.0528 (17) −0.0057 (18) −0.0112 (14) −0.0182 (17)
C14 0.0502 (15) 0.0652 (17) 0.0713 (17) 0.0067 (14) −0.0049 (13) −0.0105 (15)
C13 0.0723 (19) 0.0517 (16) 0.0732 (18) 0.0061 (15) −0.0120 (15) 0.0052 (16)
C19 0.0628 (17) 0.0706 (19) 0.0736 (17) 0.0133 (15) −0.0062 (14) 0.0036 (17)
C27 0.0704 (19) 0.097 (3) 0.0476 (15) 0.0017 (17) −0.0012 (13) 0.0128 (17)

Geometric parameters (Å, °)

O1—C1 1.218 (3) C18—C19 1.380 (4)
N1—C1 1.366 (3) C18—H18 0.9300
N1—C8 1.407 (3) C9—H9A 0.9700
N1—C23 1.449 (3) C9—H9B 0.9700
C24—C25 1.379 (3) C22—C21 1.375 (3)
C24—C29 1.383 (3) C22—H22 0.9300
C24—C23 1.507 (3) C6—C5 1.374 (4)
C8—C7 1.379 (3) C6—C7 1.380 (3)
C8—C3 1.388 (3) C6—H6 0.9300
C3—C4 1.384 (3) C29—C28 1.379 (4)
C3—C2 1.512 (3) C29—H29 0.9300
C16—C17 1.510 (3) C26—C27 1.379 (4)
C16—C2 1.553 (3) C26—H26 0.9300
C16—H16A 0.9700 C7—H7 0.9300
C16—H16B 0.9700 C11—C12 1.386 (3)
C10—C11 1.383 (3) C11—H11 0.9300
C10—C15 1.388 (3) C21—C20 1.366 (4)
C10—C9 1.514 (3) C21—H21 0.9300
C15—C14 1.384 (3) C12—C13 1.372 (4)
C15—H15 0.9300 C12—H12 0.9300
C4—C5 1.387 (3) C20—C19 1.381 (4)
C4—H4 0.9300 C20—H20 0.9300
C2—C1 1.532 (3) C5—H5 0.9300
C2—C9 1.539 (3) C28—C27 1.365 (4)
C25—C26 1.375 (3) C28—H28 0.9300
C25—H25 0.9300 C14—C13 1.367 (4)
C17—C22 1.383 (3) C14—H14 0.9300
C17—C18 1.389 (3) C13—H13 0.9300
C23—H23A 0.9700 C19—H19 0.9300
C23—H23B 0.9700 C27—H27 0.9300
C1—N1—C8 110.93 (17) C10—C9—C2 115.07 (18)
C1—N1—C23 124.39 (19) C10—C9—H9A 108.5
C8—N1—C23 124.65 (19) C2—C9—H9A 108.5
C25—C24—C29 118.1 (2) C10—C9—H9B 108.5
C25—C24—C23 122.5 (2) C2—C9—H9B 108.5
C29—C24—C23 119.4 (2) H9A—C9—H9B 107.5
C7—C8—C3 122.2 (2) C21—C22—C17 121.4 (3)
C7—C8—N1 128.2 (2) C21—C22—H22 119.3
C3—C8—N1 109.58 (17) C17—C22—H22 119.3
C4—C3—C8 119.18 (19) C5—C6—C7 121.3 (2)
C4—C3—C2 131.7 (2) C5—C6—H6 119.3
C8—C3—C2 109.10 (17) C7—C6—H6 119.3
C17—C16—C2 116.90 (19) C28—C29—C24 121.1 (3)
C17—C16—H16A 108.1 C28—C29—H29 119.5
C2—C16—H16A 108.1 C24—C29—H29 119.5
C17—C16—H16B 108.1 C25—C26—C27 120.2 (3)
C2—C16—H16B 108.1 C25—C26—H26 119.9
H16A—C16—H16B 107.3 C27—C26—H26 119.9
C11—C10—C15 117.9 (2) C8—C7—C6 117.6 (2)
C11—C10—C9 122.0 (2) C8—C7—H7 121.2
C15—C10—C9 120.1 (2) C6—C7—H7 121.2
C14—C15—C10 120.8 (3) C10—C11—C12 121.2 (2)
C14—C15—H15 119.6 C10—C11—H11 119.4
C10—C15—H15 119.6 C12—C11—H11 119.4
C3—C4—C5 119.0 (2) C20—C21—C22 120.6 (3)
C3—C4—H4 120.5 C20—C21—H21 119.7
C5—C4—H4 120.5 C22—C21—H21 119.7
C3—C2—C1 101.66 (17) C13—C12—C11 119.8 (3)
C3—C2—C9 113.73 (18) C13—C12—H12 120.1
C1—C2—C9 110.30 (19) C11—C12—H12 120.1
C3—C2—C16 113.32 (18) C21—C20—C19 119.4 (3)
C1—C2—C16 106.07 (17) C21—C20—H20 120.3
C9—C2—C16 111.05 (18) C19—C20—H20 120.3
O1—C1—N1 124.8 (2) C6—C5—C4 120.7 (2)
O1—C1—C2 126.4 (2) C6—C5—H5 119.7
N1—C1—C2 108.73 (19) C4—C5—H5 119.7
C26—C25—C24 120.9 (2) C27—C28—C29 120.2 (3)
C26—C25—H25 119.5 C27—C28—H28 119.9
C24—C25—H25 119.5 C29—C28—H28 119.9
C22—C17—C18 117.4 (2) C13—C14—C15 120.3 (2)
C22—C17—C16 121.5 (2) C13—C14—H14 119.8
C18—C17—C16 121.0 (2) C15—C14—H14 119.8
N1—C23—C24 114.57 (19) C14—C13—C12 119.9 (3)
N1—C23—H23A 108.6 C14—C13—H13 120.0
C24—C23—H23A 108.6 C12—C13—H13 120.0
N1—C23—H23B 108.6 C20—C19—C18 119.9 (3)
C24—C23—H23B 108.6 C20—C19—H19 120.0
H23A—C23—H23B 107.6 C18—C19—H19 120.0
C19—C18—C17 121.3 (3) C28—C27—C26 119.5 (3)
C19—C18—H18 119.4 C28—C27—H27 120.2
C17—C18—H18 119.4 C26—C27—H27 120.2

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HG5107).

References

  1. Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
  2. Katritzky, A. R., Feng, D. M., Qi, M., Lang, H. Y. & Steel, P. J. (1997). Bull. Soc. Chim. Belg. 106, 419–423.
  3. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  4. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  5. Siemens (1996). SMART and SAINT Siemens Analytical X-ray Instruments Inc., Madison, Wisconsin, USA.
  6. Wang, S. B., Zhao, Y. F., Zhang, G. G., Lv, Y. X., Zhang, N. & Gong, P. (2011). Eur. J. Med. Chem. 8, 3509–3518. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811042425/hg5107sup1.cif

e-67-o2998-sup1.cif (19.6KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811042425/hg5107Isup2.hkl

e-67-o2998-Isup2.hkl (101.9KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811042425/hg5107Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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