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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Oct 22;67(Pt 11):o3017. doi: 10.1107/S1600536811042681

(E)-N′-(2-Chloro­benzyl­idene)-3,5-di­hydroxy­benzohydrazide dihydrate

Ling Yuan a,c, Yi Nan b, Jing-Yuan Li c, Xiu-Lan Huang c,*
PMCID: PMC3247416  PMID: 22220034

Abstract

In the Schiff base mol­ecule of the title compound, C14H11ClN2O3·2H2O, the benzene rings form a dihedral angle of 20.6 (1)°. The water molecules of crystallization are involved in the formation of a three-dimensional hydrogen-bonding network via O—H⋯O and N—H⋯O hydrogen bonds.

Related literature

For general background to Schiff base compounds, see: Brückner et al. (2000); Harrop et al.(2003); Zhang et al. (2008). For related structures, see: Diao et al. (2007); Jiang et al. (2008); Huang et al. (2008); Deng et al. (2009).graphic file with name e-67-o3017-scheme1.jpg

Experimental

Crystal data

  • C14H11ClN2O3·2H2O

  • M r = 326.73

  • Monoclinic, Inline graphic

  • a = 8.023 (2) Å

  • b = 11.852 (4) Å

  • c = 16.318 (5) Å

  • β = 100.387 (4)°

  • V = 1526.1 (8) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.28 mm−1

  • T = 296 K

  • 0.44 × 0.12 × 0.07 mm

Data collection

  • Bruker APEXII CCD diffractometer

  • 12729 measured reflections

  • 3522 independent reflections

  • 2286 reflections with I > 2σ(I)

  • R int = 0.040

Refinement

  • R[F 2 > 2σ(F 2)] = 0.051

  • wR(F 2) = 0.140

  • S = 1.03

  • 3522 reflections

  • 199 parameters

  • H-atom parameters constrained

  • Δρmax = 0.32 e Å−3

  • Δρmin = −0.33 e Å−3

Data collection: APEX2 (Bruker, 2005); cell refinement: APEX2; data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811042681/cv5172sup1.cif

e-67-o3017-sup1.cif (18KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811042681/cv5172Isup2.hkl

e-67-o3017-Isup2.hkl (172.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811042681/cv5172Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O2—H2B⋯O5 0.82 1.87 2.674 (3) 168
O3—H3A⋯O1i 0.82 1.85 2.665 (2) 169
N2—H2A⋯O2ii 0.86 2.36 3.196 (3) 164
O4—H4B⋯O1 0.85 2.12 2.960 (4) 171
O5—H5A⋯O4iii 0.85 1.99 2.816 (4) 163
O5—H5B⋯O3iv 0.85 2.14 2.902 (3) 150

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic.

Acknowledgments

This project was supported by the National Natural Science Foundation of China (grant No. 81102893) and 2011 Ningxia Science and Technology Key Projects (grant No. 2011-25) and 2009 Ningxia Science and Technology Key Projects (grant No. 232).

supplementary crystallographic information

Comment

Schiff base compounds are known to exhibit antibacterial and antitumor properties (Brückner et al., 2000; Harrop et al., 2003; Zhang et al., 2008). In order to expand this filed, we report here the structure of the title compound (I).

In (I) (Fig. 1), all bond lengths and angles are normal and comparable with those found in the related compounds (Diao et al., 2007; Deng et al., 2009; Huang et al., 2008, Jiang et al., 2008). In the Shiff base molecule, two benzene rings form a dihedral angle of 20.6 (1)°.

In the crystal structure, intermolecular O—H···O and N—H···O hydrogen bonds (Table 1) consolidate the crystal packing.

Experimental

2-Chlorobenzaldehyde (0.1 mmol, 14.1 mg) and 3,5-dihydroxybenzhydrazide (0.1 mmol, 16.8 mg) were dissolved in a methanol solution (10 ml). The mixture was stirred at room temperature for 1 h and filtered. After keeping the filtrate in air for three days, yellow crystals were formed.

Refinement

H atoms were placed in calculated positions (C—H 0.93 Å; N—H 0.86 Å; O—H 0.82 Å) and were included in the refinement in the riding model approximation, with Uiso(H)=) =1.2-1.5Ueq of the parent atom.

Figures

Fig. 1.

Fig. 1.

The molecular structure of (I) showing the atomic numbering and 30% probability displacement ellipsoids.

Crystal data

C14H11ClN2O3·2H2O F(000) = 680
Mr = 326.73 Dx = 1.422 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P2ybc Cell parameters from 4061 reflections
a = 8.023 (2) Å θ = 2.5–27.1°
b = 11.852 (4) Å µ = 0.28 mm1
c = 16.318 (5) Å T = 296 K
β = 100.387 (4)° Stick, yellow
V = 1526.1 (8) Å3 0.44 × 0.12 × 0.07 mm
Z = 4

Data collection

Bruker APEXII CCD diffractometer 2286 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube Rint = 0.040
graphite θmax = 27.6°, θmin = 2.1°
φ and ω scans h = −10→10
12729 measured reflections k = −15→15
3522 independent reflections l = −20→21

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.140 H-atom parameters constrained
S = 1.03 w = 1/[σ2(Fo2) + (0.044P)2 + 1.2P] where P = (Fo2 + 2Fc2)/3
3522 reflections (Δ/σ)max < 0.001
199 parameters Δρmax = 0.32 e Å3
0 restraints Δρmin = −0.33 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cl1 0.07549 (13) 0.73732 (7) 0.46696 (6) 0.0836 (3)
O1 0.4482 (3) 0.20583 (16) 0.45642 (10) 0.0555 (5)
O2 0.7564 (2) 0.07180 (15) 0.22642 (10) 0.0508 (5)
H2B 0.7932 0.0426 0.2716 0.076*
O3 0.3480 (3) 0.33745 (18) 0.10033 (10) 0.0615 (6)
H3A 0.3864 0.3177 0.0593 0.092*
N1 0.3161 (2) 0.41028 (17) 0.48357 (10) 0.0374 (4)
N2 0.3589 (2) 0.37857 (17) 0.40850 (10) 0.0368 (4)
H2A 0.3450 0.4252 0.3674 0.044*
C1 0.1081 (3) 0.6554 (2) 0.55602 (17) 0.0472 (6)
C2 0.0554 (4) 0.6968 (3) 0.6271 (2) 0.0621 (8)
H2 0.0022 0.7666 0.6257 0.074*
C3 0.0818 (4) 0.6351 (3) 0.6986 (2) 0.0678 (9)
H3 0.0483 0.6635 0.7462 0.081*
C4 0.1571 (4) 0.5318 (3) 0.70062 (18) 0.0687 (9)
H4 0.1738 0.4897 0.7495 0.082*
C5 0.2090 (4) 0.4891 (3) 0.63044 (16) 0.0550 (7)
H5 0.2596 0.4184 0.6326 0.066*
C6 0.1866 (3) 0.5505 (2) 0.55659 (14) 0.0382 (5)
C7 0.2396 (3) 0.5047 (2) 0.48164 (14) 0.0371 (5)
H7 0.2171 0.5453 0.4321 0.044*
C8 0.4220 (3) 0.2757 (2) 0.39941 (12) 0.0353 (5)
C9 0.4635 (3) 0.25014 (19) 0.31552 (12) 0.0326 (5)
C10 0.5859 (3) 0.16929 (19) 0.31167 (12) 0.0347 (5)
H10 0.6357 0.1302 0.3592 0.042*
C11 0.6334 (3) 0.14750 (19) 0.23525 (13) 0.0351 (5)
C12 0.5573 (3) 0.2046 (2) 0.16457 (12) 0.0387 (5)
H12 0.5916 0.1910 0.1140 0.046*
C13 0.4305 (3) 0.2818 (2) 0.16880 (12) 0.0387 (5)
C14 0.3828 (3) 0.3059 (2) 0.24457 (13) 0.0393 (5)
H14 0.2981 0.3585 0.2477 0.047*
O4 0.2697 (4) −0.0135 (3) 0.4316 (2) 0.1159 (11)
H4A 0.3177 −0.0688 0.4595 0.174*
H4B 0.3266 0.0473 0.4339 0.174*
O5 0.9176 (3) −0.00817 (18) 0.37266 (13) 0.0690 (6)
H5A 1.0182 −0.0070 0.4001 0.104*
H5B 0.8554 −0.0465 0.3993 0.104*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cl1 0.1051 (7) 0.0521 (5) 0.0969 (7) 0.0157 (5) 0.0274 (6) 0.0134 (4)
O1 0.0881 (14) 0.0572 (11) 0.0272 (8) 0.0154 (10) 0.0261 (9) 0.0084 (8)
O2 0.0624 (12) 0.0562 (11) 0.0360 (9) 0.0213 (9) 0.0146 (8) −0.0016 (8)
O3 0.0820 (14) 0.0817 (14) 0.0224 (8) 0.0345 (12) 0.0139 (8) 0.0076 (8)
N1 0.0404 (11) 0.0505 (12) 0.0244 (8) 0.0010 (9) 0.0141 (8) −0.0046 (8)
N2 0.0438 (11) 0.0479 (11) 0.0217 (8) 0.0006 (9) 0.0140 (8) −0.0011 (8)
C1 0.0379 (14) 0.0438 (14) 0.0619 (16) −0.0085 (11) 0.0146 (12) −0.0153 (12)
C2 0.0455 (16) 0.0534 (17) 0.093 (2) −0.0089 (13) 0.0284 (16) −0.0352 (17)
C3 0.0585 (19) 0.087 (2) 0.067 (2) −0.0154 (17) 0.0349 (16) −0.0362 (18)
C4 0.071 (2) 0.097 (3) 0.0449 (15) 0.0004 (19) 0.0279 (14) −0.0074 (16)
C5 0.0568 (17) 0.0714 (19) 0.0414 (14) 0.0092 (14) 0.0212 (12) −0.0046 (13)
C6 0.0311 (12) 0.0477 (13) 0.0384 (12) −0.0053 (10) 0.0131 (9) −0.0095 (10)
C7 0.0366 (12) 0.0455 (13) 0.0311 (11) −0.0054 (11) 0.0114 (9) −0.0022 (9)
C8 0.0394 (12) 0.0451 (13) 0.0240 (10) 0.0002 (10) 0.0129 (9) −0.0016 (9)
C9 0.0368 (12) 0.0419 (12) 0.0209 (9) −0.0035 (10) 0.0103 (8) −0.0017 (8)
C10 0.0403 (13) 0.0412 (12) 0.0235 (9) 0.0004 (10) 0.0081 (9) 0.0006 (9)
C11 0.0406 (13) 0.0376 (12) 0.0290 (10) −0.0009 (10) 0.0112 (9) −0.0055 (9)
C12 0.0497 (14) 0.0474 (13) 0.0220 (9) 0.0015 (11) 0.0146 (9) −0.0062 (9)
C13 0.0464 (13) 0.0481 (13) 0.0222 (10) 0.0042 (11) 0.0076 (9) 0.0001 (9)
C14 0.0464 (14) 0.0480 (13) 0.0257 (10) 0.0100 (11) 0.0124 (9) −0.0005 (9)
O4 0.099 (2) 0.098 (2) 0.138 (3) −0.0265 (18) −0.0111 (19) 0.0009 (19)
O5 0.0685 (14) 0.0749 (14) 0.0616 (12) 0.0020 (11) 0.0063 (10) 0.0216 (11)

Geometric parameters (Å, °)

Cl1—C1 1.728 (3) C5—C6 1.391 (4)
O1—C8 1.235 (3) C5—H5 0.9300
O2—C11 1.361 (3) C6—C7 1.469 (3)
O2—H2B 0.8200 C7—H7 0.9300
O3—C13 1.362 (3) C8—C9 1.497 (3)
O3—H3A 0.8200 C9—C10 1.382 (3)
N1—C7 1.274 (3) C9—C14 1.388 (3)
N1—N2 1.383 (2) C10—C11 1.392 (3)
N2—C8 1.338 (3) C10—H10 0.9300
N2—H2A 0.8600 C11—C12 1.381 (3)
C1—C6 1.392 (4) C12—C13 1.379 (3)
C1—C2 1.393 (4) C12—H12 0.9300
C2—C3 1.361 (5) C13—C14 1.388 (3)
C2—H2 0.9300 C14—H14 0.9300
C3—C4 1.363 (5) O4—H4A 0.8500
C3—H3 0.9300 O4—H4B 0.8500
C4—C5 1.383 (4) O5—H5A 0.8500
C4—H4 0.9300 O5—H5B 0.8500
C11—O2—H2B 109.5 N1—C7—H7 119.5
C13—O3—H3A 109.5 C6—C7—H7 119.5
C7—N1—N2 114.36 (19) O1—C8—N2 122.96 (18)
C8—N2—N1 120.34 (18) O1—C8—C9 121.1 (2)
C8—N2—H2A 119.8 N2—C8—C9 115.90 (19)
N1—N2—H2A 119.8 C10—C9—C14 121.39 (18)
C6—C1—C2 120.9 (3) C10—C9—C8 117.35 (19)
C6—C1—Cl1 120.46 (19) C14—C9—C8 121.3 (2)
C2—C1—Cl1 118.6 (2) C9—C10—C11 118.7 (2)
C3—C2—C1 120.1 (3) C9—C10—H10 120.6
C3—C2—H2 120.0 C11—C10—H10 120.6
C1—C2—H2 120.0 O2—C11—C12 117.05 (18)
C2—C3—C4 120.2 (3) O2—C11—C10 122.6 (2)
C2—C3—H3 119.9 C12—C11—C10 120.4 (2)
C4—C3—H3 119.9 C13—C12—C11 120.16 (18)
C3—C4—C5 120.4 (3) C13—C12—H12 119.9
C3—C4—H4 119.8 C11—C12—H12 119.9
C5—C4—H4 119.8 O3—C13—C12 122.25 (18)
C4—C5—C6 121.0 (3) O3—C13—C14 117.4 (2)
C4—C5—H5 119.5 C12—C13—C14 120.3 (2)
C6—C5—H5 119.5 C9—C14—C13 118.9 (2)
C5—C6—C1 117.4 (2) C9—C14—H14 120.6
C5—C6—C7 121.1 (2) C13—C14—H14 120.6
C1—C6—C7 121.5 (2) H4A—O4—H4B 116.3
N1—C7—C6 120.9 (2) H5A—O5—H5B 109.2
C7—N1—N2—C8 −172.3 (2) O1—C8—C9—C10 −24.0 (3)
C6—C1—C2—C3 0.6 (4) N2—C8—C9—C10 154.7 (2)
Cl1—C1—C2—C3 −178.9 (2) O1—C8—C9—C14 156.3 (2)
C1—C2—C3—C4 −1.1 (5) N2—C8—C9—C14 −25.0 (3)
C2—C3—C4—C5 0.6 (5) C14—C9—C10—C11 2.8 (3)
C3—C4—C5—C6 0.4 (5) C8—C9—C10—C11 −176.9 (2)
C4—C5—C6—C1 −0.9 (4) C9—C10—C11—O2 178.0 (2)
C4—C5—C6—C7 −179.2 (3) C9—C10—C11—C12 −1.0 (3)
C2—C1—C6—C5 0.4 (4) O2—C11—C12—C13 179.4 (2)
Cl1—C1—C6—C5 179.9 (2) C10—C11—C12—C13 −1.6 (4)
C2—C1—C6—C7 178.7 (2) C11—C12—C13—O3 −177.8 (2)
Cl1—C1—C6—C7 −1.7 (3) C11—C12—C13—C14 2.4 (4)
N2—N1—C7—C6 −179.62 (19) C10—C9—C14—C13 −2.0 (4)
C5—C6—C7—N1 −3.9 (4) C8—C9—C14—C13 177.7 (2)
C1—C6—C7—N1 177.8 (2) O3—C13—C14—C9 179.6 (2)
N1—N2—C8—O1 −1.5 (4) C12—C13—C14—C9 −0.6 (4)
N1—N2—C8—C9 179.82 (19)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O2—H2B···O5 0.82 1.87 2.674 (3) 168.
O3—H3A···O1i 0.82 1.85 2.665 (2) 169.
N2—H2A···O2ii 0.86 2.36 3.196 (3) 164.
O4—H4B···O1 0.85 2.12 2.960 (4) 171.
O5—H5A···O4iii 0.85 1.99 2.816 (4) 163.
O5—H5B···O3iv 0.85 2.14 2.902 (3) 150.

Symmetry codes: (i) x, −y+1/2, z−1/2; (ii) −x+1, y+1/2, −z+1/2; (iii) x+1, y, z; (iv) −x+1, y−1/2, −z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: CV5172).

References

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  2. Bruker (2005). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Deng, S., Han, L., Huang, S., Zhang, H., Diao, Y. & Liu, K. (2009). Acta Cryst. E65, o721. [DOI] [PMC free article] [PubMed]
  4. Diao, Y.-P., Zhang, J.-K., Xie, S.-Q. & Kang, T.-G. (2007). Acta Cryst. E63, o4908.
  5. Harrop, T. C., Olmstead, M. M. & Mascharak, P. K. (2003). Chem. Commun. pp. 410–411. [DOI] [PubMed]
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  9. Zhang, H.-Q., Li, J.-Z., Zhang, Y. & Zhang, D. (2008). Chin. J. Inorg. Chem. 24, 990–993.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811042681/cv5172sup1.cif

e-67-o3017-sup1.cif (18KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811042681/cv5172Isup2.hkl

e-67-o3017-Isup2.hkl (172.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811042681/cv5172Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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