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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Oct 29;67(Pt 11):o3033. doi: 10.1107/S160053681104284X

Ethyl 3-benzoyl­indolizine-1-carboxyl­ate

Wei-Jin Gu a, Jin Zhuang a, Yu-Liang Jiang a, Bing-Xiang Wang a,*
PMCID: PMC3247427  PMID: 22220045

Abstract

The title compound, C18H15NO3, consists of an indolizine ring system and an aromatic ring. The two ring systems are not coplanar, the dihedral angle between the two being 54.26 (7)°. In the crystal, inversion dimers are formed by weak C—H⋯O interactions. These dimeric groups are further extended to form a regular two-dimensional structure by additional weak C—H⋯O inter­actions.

Related literature

For background information on indolizine and its derivatives, see: Tukulula et al. (2010); James et al. (2008); Teklu et al. (2005); Shen et al. (2008, 2006). For the synthesis of the title compound, see: Wang et al. (2000).graphic file with name e-67-o3033-scheme1.jpg

Experimental

Crystal data

  • C18H15NO3

  • M r = 293.31

  • Monoclinic, Inline graphic

  • a = 10.030 (2) Å

  • b = 19.223 (3) Å

  • c = 7.9652 (17) Å

  • β = 103.073 (3)°

  • V = 1495.9 (5) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.09 mm−1

  • T = 291 K

  • 0.24 × 0.20 × 0.18 mm

Data collection

  • Bruker SMART APEX CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2000) T min = 0.979, T max = 0.984

  • 8910 measured reflections

  • 2604 independent reflections

  • 1604 reflections with I > 2σ(I)

  • R int = 0.057

Refinement

  • R[F 2 > 2σ(F 2)] = 0.048

  • wR(F 2) = 0.129

  • S = 1.00

  • 2604 reflections

  • 201 parameters

  • H-atom parameters constrained

  • Δρmax = 0.18 e Å−3

  • Δρmin = −0.15 e Å−3

Data collection: SMART (Bruker, 2000); cell refinement: SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681104284X/im2326sup1.cif

e-67-o3033-sup1.cif (20KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681104284X/im2326Isup2.hkl

e-67-o3033-Isup2.hkl (127.9KB, hkl)

Supplementary material file. DOI: 10.1107/S160053681104284X/im2326Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C1—H1⋯O1i 0.93 2.45 3.163 (3) 134
C14—H14⋯O3ii 0.93 2.58 3.455 (3) 157

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

We thank the Natural Science Foundation of Jiangsu Province of China (grant No. BK2008435) and the Priority Academic Program Development of Jiangsu Higher Education Institutions for financial support.

supplementary crystallographic information

Comment

Indolizine and it's derivatives have been comprehensively applied in biology and medicine due to their particular structures (Tukulula et al., 2010; James et al., 2008; Teklu et al., 2005). They can also be used as organic fluorescence probes (Shen et al., 2008; Shen et al., 2006). In our continuing studies in organic fluorescence probes, we synthesized the ethyl-3-benzoylindolizine-1-carboxylate (I).

The crystal structure of the title compound, C18H15NO3, reveals that all bond lengths and angles have normal values (Table 1 and 2). In the asymmetric unit there is one title compound molecule. The molecular structure consists of one indolizine ring A (C1—C8/N) and an aromatic ring B(C10—C15) (Fig. 1). Rings A and ring B are not coplanar with the dihedral angle between them being 54.26 (7) °.

In the crystal packing there are weak C1—H1···O1i (i: 1 - x,-y,2 - z) interactions between neighbouring molecules forming dimeric groups (Fig. 2). These dimeric groups are further extended into a tegular 2-D structure via weak C14—H14···O3ii (ii: -x,-1/2 + y,0.5 - z) interactions (Fig. 2).

Experimental

Ethyl-3-benzoylindolizine-1-carboxylate was prepared by 1,3-dipolar cycloaddition according to a procedure described in the literature (Wang, et al., 2000). A suspension of N-(benzoylmethyl)pyridinium bromide (C5H5N+–CH2COC6H5 Br-) (10 mmol), ethyl acrylate (40 mmol), Et3N (20 ml) and CrO3 (20 mmol) in DMF (40 ml) was stirred at 90°C for 2 h (monitored by TLC). The mixture was then cooled to room temperature and poured into 5% aqueous HCl (200 mL). The mixture was extracted with CH2Cl2 (2 times 50 mL) and the combined extracts were washed with water (2 times 50 mL) and dried over Na2SO4. The solvent was removed to give a solid, which was purified by chromatography [silica gel, 20% ethyl acetate in light petroleum (b.p. 60–90°C)] to yield 1.90 g (68%) (I). Yellow crystals were obtained by recrystallization from ethyl acetate at room temperature.

H-NMR (CDCl3, 400 MHz) δ: 1.41 (t, 3H, CH3), 4.38 (q, 2H, CH2), 7.10 (t, 1H, H6), 7.44–7.84 (m, 7H, H7, H2 and PhH), 8.39 (d, 1H, H8), 9.98 (d, 1H, H5).

Refinement

The H atoms were placed in calculated positions and included as part of a riding model, with C—H = 0.93–0.97 Å, and with Uequiv values set at 1.2–1.5 Uequiv of the parent atoms.

Figures

Fig. 1.

Fig. 1.

A view of the title compound showing the atom-numbering scheme and displacement ellipsoids drawn at 30% probability level.

Fig. 2.

Fig. 2.

A view of the 2-D structure down c axis (i: 1 - x,-y,2 - z; ii: -x,-1/2 + y,0.5 - z).

Crystal data

C18H15NO3 F(000) = 616
Mr = 293.31 Dx = 1.302 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 1073 reflections
a = 10.030 (2) Å θ = 2.3–19.4°
b = 19.223 (3) Å µ = 0.09 mm1
c = 7.9652 (17) Å T = 291 K
β = 103.073 (3)° Block, yellow
V = 1495.9 (5) Å3 0.24 × 0.20 × 0.18 mm
Z = 4

Data collection

Bruker SMART APEX CCD diffractometer 2604 independent reflections
Radiation source: sealed tube 1604 reflections with I > 2σ(I)
graphite Rint = 0.057
phi and ω scans θmax = 25.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2000) h = −11→11
Tmin = 0.979, Tmax = 0.984 k = −22→20
8910 measured reflections l = −9→9

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.048 H-atom parameters constrained
wR(F2) = 0.129 w = 1/[σ2(Fo2) + (0.0588P)2] where P = (Fo2 + 2Fc2)/3
S = 1.00 (Δ/σ)max = 0.010
2604 reflections Δρmax = 0.18 e Å3
201 parameters Δρmin = −0.15 e Å3
0 restraints Extinction correction: SHELXL97, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methods Extinction coefficient: 0.015 (2)

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.Least-squares planes (x,y,z in crystal coordinates) and deviations from them (* indicates atom used to define plane)8.2801 (0.0047) x + 9.1394 (0.0112) y - 3.8457 (0.0039) z = 0.2003 (0.0031)* 0.0099 (0.0018) C1 * 0.0019 (0.0019) C2 * -0.0097 (0.0019) C3 * -0.0087 (0.0017) C4 * 0.0066 (0.0018) C5 * 0.0165 (0.0017) C6 * -0.0108 (0.0017) C7 * -0.0130 (0.0017) C8 * 0.0072 (0.0016) N1Rms deviation of fitted atoms = 0.0101- 0.9358 (0.0101) x - 10.1188 (0.0159) y + 6.7251 (0.0044) z = 4.3984 (0.0037)Angle to previous plane (with approximate e.s.d.) = 54.26 (0.07)* -0.0091 (0.0016) C10 * 0.0153 (0.0017) C11 * -0.0081 (0.0018) C12 * -0.0053 (0.0019) C13 * 0.0114 (0.0018) C14 * -0.0042 (0.0016) C15Rms deviation of fitted atoms = 0.0097

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 0.3367 (2) 0.08044 (12) 0.8614 (3) 0.0535 (7)
H1 0.4005 0.0494 0.9231 0.064*
C2 0.3057 (3) 0.13943 (12) 0.9370 (3) 0.0620 (7)
H2 0.3483 0.1490 1.0509 0.074*
C3 0.2092 (3) 0.18631 (13) 0.8436 (3) 0.0613 (7)
H3 0.1880 0.2267 0.8963 0.074*
C4 0.1464 (2) 0.17291 (11) 0.6764 (3) 0.0501 (6)
H4 0.0825 0.2041 0.6154 0.060*
C5 0.1782 (2) 0.11209 (10) 0.5963 (3) 0.0426 (6)
C6 0.1348 (2) 0.08293 (10) 0.4309 (3) 0.0445 (6)
C7 0.2020 (2) 0.02004 (11) 0.4333 (3) 0.0477 (6)
H7 0.1906 −0.0104 0.3403 0.057*
C8 0.2880 (2) 0.00854 (10) 0.5917 (3) 0.0449 (6)
C9 0.3887 (2) −0.04547 (11) 0.6464 (3) 0.0473 (6)
C10 0.3774 (2) −0.10994 (10) 0.5398 (3) 0.0411 (6)
C11 0.4968 (3) −0.13982 (12) 0.5151 (3) 0.0536 (7)
H11 0.5808 −0.1192 0.5626 0.064*
C12 0.4918 (3) −0.20014 (12) 0.4201 (4) 0.0670 (8)
H12 0.5722 −0.2191 0.4002 0.080*
C13 0.3690 (3) −0.23235 (13) 0.3550 (3) 0.0674 (8)
H13 0.3662 −0.2732 0.2917 0.081*
C14 0.2502 (3) −0.20418 (12) 0.3833 (3) 0.0611 (7)
H14 0.1671 −0.2265 0.3414 0.073*
C15 0.2542 (2) −0.14261 (11) 0.4742 (3) 0.0497 (6)
H15 0.1734 −0.1231 0.4912 0.060*
C16 0.0427 (2) 0.11668 (12) 0.2879 (3) 0.0496 (6)
C17 −0.0756 (3) 0.10378 (13) −0.0047 (3) 0.0640 (7)
H17A −0.0512 0.0856 −0.1073 0.077*
H17B −0.0680 0.1541 −0.0066 0.077*
C18 −0.2186 (3) 0.08400 (16) −0.0048 (4) 0.0880 (10)
H18A −0.2252 0.0343 0.0015 0.132*
H18B −0.2785 0.1003 −0.1089 0.132*
H18C −0.2446 0.1046 0.0928 0.132*
N1 0.27358 (18) 0.06663 (9) 0.6934 (2) 0.0438 (5)
O1 0.48475 (18) −0.03908 (9) 0.7719 (2) 0.0698 (5)
O2 0.01794 (18) 0.07657 (8) 0.1471 (2) 0.0672 (5)
O3 −0.00443 (17) 0.17415 (8) 0.2920 (2) 0.0662 (5)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.0636 (17) 0.0482 (14) 0.0423 (14) 0.0019 (12) −0.0016 (12) −0.0008 (11)
C2 0.080 (2) 0.0534 (15) 0.0490 (16) 0.0019 (14) 0.0082 (14) −0.0108 (13)
C3 0.0735 (19) 0.0484 (15) 0.0631 (18) 0.0056 (13) 0.0175 (15) −0.0091 (13)
C4 0.0506 (15) 0.0421 (13) 0.0576 (17) 0.0043 (11) 0.0123 (13) 0.0015 (12)
C5 0.0403 (14) 0.0374 (12) 0.0488 (14) 0.0011 (10) 0.0075 (12) 0.0033 (11)
C6 0.0471 (15) 0.0389 (12) 0.0440 (14) 0.0024 (11) 0.0033 (11) −0.0009 (11)
C7 0.0532 (16) 0.0408 (13) 0.0445 (15) −0.0015 (11) 0.0015 (12) −0.0058 (10)
C8 0.0510 (15) 0.0372 (12) 0.0431 (14) 0.0017 (11) 0.0035 (12) −0.0031 (10)
C9 0.0464 (15) 0.0434 (13) 0.0485 (15) 0.0003 (11) 0.0028 (13) 0.0015 (11)
C10 0.0458 (15) 0.0342 (12) 0.0406 (13) 0.0014 (11) 0.0040 (11) 0.0066 (10)
C11 0.0483 (16) 0.0473 (14) 0.0643 (17) 0.0002 (12) 0.0109 (13) 0.0001 (12)
C12 0.0695 (19) 0.0521 (16) 0.084 (2) 0.0083 (14) 0.0271 (16) −0.0052 (15)
C13 0.084 (2) 0.0468 (15) 0.0695 (19) −0.0001 (16) 0.0127 (17) −0.0128 (13)
C14 0.0613 (18) 0.0481 (15) 0.0678 (18) −0.0107 (13) 0.0020 (14) −0.0026 (13)
C15 0.0471 (16) 0.0444 (13) 0.0550 (16) 0.0025 (11) 0.0061 (13) 0.0017 (12)
C16 0.0505 (16) 0.0441 (14) 0.0505 (16) 0.0011 (12) 0.0037 (12) 0.0040 (12)
C17 0.069 (2) 0.0711 (17) 0.0429 (15) 0.0018 (15) −0.0064 (14) 0.0072 (13)
C18 0.072 (2) 0.113 (2) 0.074 (2) −0.0102 (18) 0.0051 (17) 0.0196 (18)
N1 0.0485 (12) 0.0381 (10) 0.0412 (11) −0.0003 (9) 0.0027 (9) −0.0013 (8)
O1 0.0645 (12) 0.0669 (12) 0.0635 (12) 0.0164 (9) −0.0162 (10) −0.0144 (9)
O2 0.0783 (13) 0.0639 (11) 0.0487 (11) 0.0165 (9) −0.0083 (9) −0.0023 (9)
O3 0.0722 (13) 0.0488 (10) 0.0679 (13) 0.0143 (9) −0.0041 (10) 0.0056 (9)

Geometric parameters (Å, °)

C1—C2 1.353 (3) C10—C11 1.382 (3)
C1—N1 1.370 (3) C11—C12 1.379 (3)
C1—H1 0.9300 C11—H11 0.9300
C2—C3 1.406 (3) C12—C13 1.372 (3)
C2—H2 0.9300 C12—H12 0.9300
C3—C4 1.363 (3) C13—C14 1.373 (3)
C3—H3 0.9300 C13—H13 0.9300
C4—C5 1.403 (3) C14—C15 1.383 (3)
C4—H4 0.9300 C14—H14 0.9300
C5—N1 1.393 (3) C15—H15 0.9300
C5—C6 1.407 (3) C16—O3 1.205 (3)
C6—C7 1.382 (3) C16—O2 1.337 (3)
C6—C16 1.448 (3) C17—O2 1.450 (3)
C7—C8 1.376 (3) C17—C18 1.484 (3)
C7—H7 0.9300 C17—H17A 0.9700
C8—N1 1.406 (2) C17—H17B 0.9700
C8—C9 1.445 (3) C18—H18A 0.9600
C9—O1 1.228 (3) C18—H18B 0.9600
C9—C10 1.492 (3) C18—H18C 0.9600
C10—C15 1.379 (3)
C2—C1—N1 119.7 (2) C10—C11—H11 119.9
C2—C1—H1 120.2 C13—C12—C11 120.4 (2)
N1—C1—H1 120.2 C13—C12—H12 119.8
C1—C2—C3 120.1 (2) C11—C12—H12 119.8
C1—C2—H2 119.9 C12—C13—C14 119.9 (2)
C3—C2—H2 119.9 C12—C13—H13 120.1
C4—C3—C2 120.4 (2) C14—C13—H13 120.1
C4—C3—H3 119.8 C13—C14—C15 120.0 (2)
C2—C3—H3 119.8 C13—C14—H14 120.0
C3—C4—C5 120.0 (2) C15—C14—H14 120.0
C3—C4—H4 120.0 C10—C15—C14 120.3 (2)
C5—C4—H4 120.0 C10—C15—H15 119.8
N1—C5—C4 117.9 (2) C14—C15—H15 119.8
N1—C5—C6 107.35 (18) O3—C16—O2 123.5 (2)
C4—C5—C6 134.7 (2) O3—C16—C6 125.0 (2)
C7—C6—C5 106.80 (19) O2—C16—C6 111.5 (2)
C7—C6—C16 128.7 (2) O2—C17—C18 110.6 (2)
C5—C6—C16 124.45 (19) O2—C17—H17A 109.5
C8—C7—C6 110.83 (19) C18—C17—H17A 109.5
C8—C7—H7 124.6 O2—C17—H17B 109.5
C6—C7—H7 124.6 C18—C17—H17B 109.5
C7—C8—N1 106.01 (18) H17A—C17—H17B 108.1
C7—C8—C9 129.9 (2) C17—C18—H18A 109.5
N1—C8—C9 123.6 (2) C17—C18—H18B 109.5
O1—C9—C8 122.7 (2) H18A—C18—H18B 109.5
O1—C9—C10 119.4 (2) C17—C18—H18C 109.5
C8—C9—C10 117.9 (2) H18A—C18—H18C 109.5
C15—C10—C11 119.2 (2) H18B—C18—H18C 109.5
C15—C10—C9 122.7 (2) C1—N1—C5 121.86 (18)
C11—C10—C9 118.0 (2) C1—N1—C8 129.14 (19)
C12—C11—C10 120.2 (2) C5—N1—C8 109.00 (18)
C12—C11—H11 119.9 C16—O2—C17 116.98 (18)
N1—C1—C2—C3 0.0 (4) C10—C11—C12—C13 −2.4 (4)
C1—C2—C3—C4 −0.2 (4) C11—C12—C13—C14 0.5 (4)
C2—C3—C4—C5 −0.1 (4) C12—C13—C14—C15 1.4 (4)
C3—C4—C5—N1 0.6 (3) C11—C10—C15—C14 −0.6 (3)
C3—C4—C5—C6 −179.7 (2) C9—C10—C15—C14 −176.8 (2)
N1—C5—C6—C7 1.5 (2) C13—C14—C15—C10 −1.3 (4)
C4—C5—C6—C7 −178.2 (2) C7—C6—C16—O3 −174.1 (2)
N1—C5—C6—C16 −175.5 (2) C5—C6—C16—O3 2.2 (4)
C4—C5—C6—C16 4.8 (4) C7—C6—C16—O2 4.5 (3)
C5—C6—C7—C8 −1.1 (3) C5—C6—C16—O2 −179.2 (2)
C16—C6—C7—C8 175.7 (2) C2—C1—N1—C5 0.5 (3)
C6—C7—C8—N1 0.3 (3) C2—C1—N1—C8 −178.6 (2)
C6—C7—C8—C9 −172.0 (2) C4—C5—N1—C1 −0.8 (3)
C7—C8—C9—O1 157.9 (2) C6—C5—N1—C1 179.45 (18)
N1—C8—C9—O1 −13.2 (4) C4—C5—N1—C8 178.43 (18)
C7—C8—C9—C10 −19.2 (4) C6—C5—N1—C8 −1.3 (2)
N1—C8—C9—C10 169.63 (18) C7—C8—N1—C1 179.8 (2)
O1—C9—C10—C15 139.8 (2) C9—C8—N1—C1 −7.3 (3)
C8—C9—C10—C15 −43.0 (3) C7—C8—N1—C5 0.6 (2)
O1—C9—C10—C11 −36.4 (3) C9—C8—N1—C5 173.6 (2)
C8—C9—C10—C11 140.8 (2) O3—C16—O2—C17 −2.7 (3)
C15—C10—C11—C12 2.5 (3) C6—C16—O2—C17 178.65 (19)
C9—C10—C11—C12 178.8 (2) C18—C17—O2—C16 −89.0 (3)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C1—H1···O1i 0.93 2.45 3.163 (3) 134
C14—H14···O3ii 0.93 2.58 3.455 (3) 157

Symmetry codes: (i) −x+1, −y, −z+2; (ii) −x, y−1/2, −z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: IM2326).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681104284X/im2326sup1.cif

e-67-o3033-sup1.cif (20KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681104284X/im2326Isup2.hkl

e-67-o3033-Isup2.hkl (127.9KB, hkl)

Supplementary material file. DOI: 10.1107/S160053681104284X/im2326Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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