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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Oct 29;67(Pt 11):o3045. doi: 10.1107/S1600536811043042

4-[Tris(1H-pyrazol-1-yl)meth­yl]phenol

Xiao-Yan Chen a, Xiaoping Yang a, Bradley J Holliday a,*
PMCID: PMC3247439  PMID: 22220057

Abstract

The title compound, C16H14N6O, was prepared by the condensation of 4-(trifluoro­meth­yl)phenol and sodium pyrazol-1-ide in a yield of 58%. The dihedral angles formed by the planes of the pyrazole rings are 50.7 (2), 71.2 (3) and 95.8 (2)°. The mol­ecules are associated into dimers by pairs of inter­molecular O—H⋯N hydrogen bonds involving the hy­droxy groups and pyrazole N atoms. In addition, π–π stacking between the phenol rings of these inversion-related dimers is observed, with a ring centroid-to-centroid distance of 3.9247 (10) Å.

Related literature

For the preparation and coordination chemistry of tris(pyrazol­yl)borates and tris­(pyrazol­yl)methanes, see: Trofimenko (1966, 1970, 1999); Pettinari & Pettinari (2005); Reger et al. (2000). For the chemistry of tris­(pyrazol­yl)methane derivatives, see: Humphrey et al. (1999). For similar structures, see: Liddle & Gardinier (2007).graphic file with name e-67-o3045-scheme1.jpg

Experimental

Crystal data

  • C16H14N6O

  • M r = 306.33

  • Triclinic, Inline graphic

  • a = 8.5065 (17) Å

  • b = 8.6829 (17) Å

  • c = 10.815 (2) Å

  • α = 96.97 (3)°

  • β = 91.51 (2)°

  • γ = 109.40 (3)°

  • V = 746.0 (3) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.09 mm−1

  • T = 153 K

  • 0.30 × 0.28 × 0.20 mm

Data collection

  • Nonius KappaCCD diffractometer

  • Absorption correction: Gaussian (XPREP in SHELXTL; Sheldrick, 2008) T min = 0.973, T max = 0.983

  • 4225 measured reflections

  • 2609 independent reflections

  • 1975 reflections with I > 2σ(I)

  • R int = 0.025

Refinement

  • R[F 2 > 2σ(F 2)] = 0.043

  • wR(F 2) = 0.099

  • S = 1.07

  • 2609 reflections

  • 209 parameters

  • H-atom parameters constrained

  • Δρmax = 0.18 e Å−3

  • Δρmin = −0.27 e Å−3

Data collection: COLLECT (Nonius, 1998); cell refinement: SCALEPACK (Otwinowski & Minor, 1997); data reduction: DENZO-SMN (Otwinowski & Minor, 1997); program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: XL in SHELXTL/PC (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and POV-RAY (Persistence of Vision Team, 2004); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and WinGX (Farrugia, 1999).

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811043042/pk2340sup1.cif

e-67-o3045-sup1.cif (21.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811043042/pk2340Isup2.hkl

e-67-o3045-Isup2.hkl (128.1KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811043042/pk2340Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H1A⋯N4i 0.82 2.02 2.836 (2) 173

Symmetry code: (i) Inline graphic.

Acknowledgments

The authors gratefully acknowledge the Robert A. Welch Foundation (grant No. F-1631), the National Science Foundation (grant Nos. CHE-0741973 and CHE-0847763), the Advanced Research Program of the Texas Higher Education Coordinating Board (grant No. 01916-090-2010) and the University of Texas at Austin for financial support of this research.

supplementary crystallographic information

Comment

Since seminal reports on tris(pyrazolyl)borates and tris(pyrazolyl)methanes (Trofimenko, 1966, 1970), variations on these ligands have been widely studied. Currently, there are great research efforts to study ligands of this type that are functionalized at the back boron or methine positions. The synthesis and coordination chemistry of aryltris(pyrazolyl)borates have also been well investigated, which has allowed significant advances in iron(II) spin-crossover chemistry. However, the chemistry of analogous tris(pyrazolyl)methane derivatives is almost unknown. Herein, we demonstrate the preparation of a new tris(pyrazolyl)methane derivative, 4-[tris(1H-pyrazol-1-yl)methyl]phenol, using a one-pot synthesis method with 4-(trifluoromethyl)phenol and freshly prepared sodium pyrazol-1-ide to give the desired product in good yield.

The solid state structure of 4-[tris(1H-pyrazol-1-yl)methyl]phenol can be seen in Fig. 1. There are two molecules in the unit cell. The molecules are associated into dimers by pairs of intermolecular O—H···N hydrogen bonds involving the hydroxyl groups and pyrazole N atoms. In addition, π–π stacking between the phenol rings of these inversion-related (-x + 2, -y + 2, -z) dimers is observed with a ring centroid-to-centroid distance of 3.9247 (10) Å.

Experimental

The title compound was prepared by refluxing 4-(trifluoromethyl)phenol (0.162 g, 1.0 mmol) and freshly prepared sodium pyrazol-1-ide (0.361 g, 4.0 mmol) in tetrahydrofuran (20 ml) for 12 h under a nitrogen atomsphere. The desired product was purified by column chromatography on silica gel using CH2Cl2 as the eluent with a yield of 58%. Single crystals suitable for X-ray diffraction were obtained via slow evaporation from a methanol solution.

Refinement

All H atoms were positioned geometrically and refined using a riding model, with C—H = 0.95 Å, and O—H = 0.82 Å. Uiso(H) values were set to 1.2Ueq(C) or 1.5Ueq(O).

Figures

Fig. 1.

Fig. 1.

Ellipsoid plot of C16H14N6O showing selected atoms at 30% probability level.

Fig. 2.

Fig. 2.

A packing diagram of C16H14N6O.

Crystal data

C16H14N6O Z = 2
Mr = 306.33 F(000) = 320
Triclinic, P1 Dx = 1.364 Mg m3
Hall symbol: -P 1 Melting point: 443 K
a = 8.5065 (17) Å Mo Kα radiation, λ = 0.71073 Å
b = 8.6829 (17) Å Cell parameters from 2208 reflections
c = 10.815 (2) Å θ = 2.9–27.5°
α = 96.97 (3)° µ = 0.09 mm1
β = 91.51 (2)° T = 153 K
γ = 109.40 (3)° Block, colourless
V = 746.0 (3) Å3 0.30 × 0.28 × 0.20 mm

Data collection

Nonius KappaCCD diffractometer 2609 independent reflections
Radiation source: fine-focus sealed tube 1975 reflections with I > 2σ(I)
graphite Rint = 0.025
ω scans θmax = 25.0°, θmin = 2.9°
Absorption correction: gaussian (XPREP in SHELXTL; Sheldrick, 2008) h = −10→10
Tmin = 0.973, Tmax = 0.983 k = −10→10
4225 measured reflections l = −12→11

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.099 H-atom parameters constrained
S = 1.07 w = 1/[σ2(Fo2) + (0.038P)2 + 0.1787P] where P = (Fo2 + 2Fc2)/3
2609 reflections (Δ/σ)max < 0.001
209 parameters Δρmax = 0.18 e Å3
0 restraints Δρmin = −0.27 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 1.00800 (16) 1.32161 (15) 0.03852 (13) 0.0266 (3)
H1A 0.9790 1.2970 −0.0362 0.054 (8)*
N1 0.74972 (17) 0.78542 (18) 0.40566 (13) 0.0180 (4)
N2 0.69159 (19) 0.65739 (19) 0.47332 (15) 0.0244 (4)
N3 0.98104 (17) 0.72693 (18) 0.31464 (14) 0.0181 (4)
N4 1.08607 (18) 0.73336 (19) 0.22092 (15) 0.0237 (4)
N5 0.70790 (17) 0.60541 (17) 0.21695 (14) 0.0173 (4)
N6 0.54566 (18) 0.59411 (18) 0.19620 (14) 0.0216 (4)
C1 0.9528 (2) 1.1846 (2) 0.09625 (17) 0.0197 (4)
C2 0.8251 (2) 1.0424 (2) 0.04486 (17) 0.0213 (4)
H2A 0.7695 1.0394 −0.0311 0.026*
C3 0.7802 (2) 0.9051 (2) 0.10623 (16) 0.0191 (4)
H3A 0.6944 0.8103 0.0711 0.023*
C4 0.8613 (2) 0.9069 (2) 0.21937 (16) 0.0165 (4)
C5 0.9873 (2) 1.0523 (2) 0.27129 (17) 0.0206 (4)
H5A 1.0427 1.0560 0.3475 0.025*
C6 1.0305 (2) 1.1896 (2) 0.21160 (17) 0.0213 (4)
H6A 1.1121 1.2863 0.2487 0.026*
C7 0.8240 (2) 0.7575 (2) 0.28833 (16) 0.0173 (4)
C8 0.6124 (2) 0.7133 (2) 0.56240 (18) 0.0250 (5)
H8A 0.5599 0.6528 0.6241 0.030*
C9 0.6169 (2) 0.8729 (2) 0.55301 (18) 0.0263 (5)
H9A 0.5710 0.9371 0.6055 0.032*
C10 0.7026 (2) 0.9154 (2) 0.45071 (17) 0.0208 (4)
H10A 0.7246 1.0141 0.4180 0.025*
C11 1.2086 (2) 0.6894 (2) 0.2675 (2) 0.0268 (5)
H11A 1.2999 0.6832 0.2244 0.032*
C12 1.1831 (2) 0.6538 (2) 0.3889 (2) 0.0281 (5)
H12A 1.2517 0.6210 0.4405 0.034*
C13 1.0367 (2) 0.6771 (2) 0.41634 (18) 0.0225 (5)
H13A 0.9846 0.6617 0.4906 0.027*
C14 0.4724 (2) 0.4422 (2) 0.13858 (17) 0.0220 (4)
H14A 0.3599 0.3985 0.1111 0.026*
C15 0.5835 (2) 0.3552 (2) 0.12394 (19) 0.0284 (5)
H15A 0.5602 0.2468 0.0870 0.034*
C16 0.7341 (2) 0.4636 (2) 0.17562 (18) 0.0238 (5)
H16A 0.8347 0.4434 0.1811 0.029*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0374 (8) 0.0219 (8) 0.0236 (9) 0.0116 (6) 0.0085 (6) 0.0092 (6)
N1 0.0197 (8) 0.0170 (8) 0.0171 (8) 0.0049 (7) 0.0029 (7) 0.0049 (7)
N2 0.0284 (9) 0.0226 (9) 0.0218 (9) 0.0056 (7) 0.0055 (7) 0.0093 (7)
N3 0.0155 (8) 0.0185 (9) 0.0209 (9) 0.0065 (6) 0.0013 (7) 0.0034 (7)
N4 0.0187 (8) 0.0256 (9) 0.0297 (10) 0.0101 (7) 0.0072 (7) 0.0066 (8)
N5 0.0149 (8) 0.0167 (9) 0.0207 (9) 0.0063 (6) 0.0007 (6) 0.0017 (7)
N6 0.0152 (8) 0.0231 (9) 0.0255 (9) 0.0057 (7) 0.0005 (7) 0.0023 (7)
C1 0.0231 (10) 0.0180 (11) 0.0234 (11) 0.0126 (8) 0.0098 (8) 0.0056 (8)
C2 0.0241 (10) 0.0261 (11) 0.0178 (10) 0.0133 (9) 0.0009 (8) 0.0044 (9)
C3 0.0184 (10) 0.0202 (11) 0.0183 (10) 0.0067 (8) 0.0003 (8) 0.0001 (8)
C4 0.0156 (9) 0.0167 (10) 0.0189 (10) 0.0077 (8) 0.0041 (8) 0.0025 (8)
C5 0.0181 (10) 0.0235 (11) 0.0199 (11) 0.0070 (8) −0.0014 (8) 0.0020 (8)
C6 0.0210 (10) 0.0167 (10) 0.0235 (11) 0.0032 (8) 0.0030 (8) 0.0011 (8)
C7 0.0145 (9) 0.0186 (10) 0.0188 (10) 0.0061 (8) 0.0008 (8) 0.0017 (8)
C8 0.0210 (10) 0.0329 (12) 0.0185 (11) 0.0049 (9) 0.0037 (8) 0.0048 (9)
C9 0.0228 (11) 0.0321 (12) 0.0248 (11) 0.0120 (9) 0.0039 (9) −0.0010 (9)
C10 0.0206 (10) 0.0201 (10) 0.0241 (11) 0.0106 (8) −0.0002 (8) 0.0013 (8)
C11 0.0181 (10) 0.0227 (11) 0.0415 (14) 0.0090 (9) 0.0027 (9) 0.0056 (10)
C12 0.0228 (11) 0.0230 (11) 0.0400 (14) 0.0101 (9) −0.0097 (9) 0.0057 (10)
C13 0.0255 (11) 0.0191 (11) 0.0223 (11) 0.0066 (8) −0.0046 (8) 0.0046 (8)
C14 0.0190 (10) 0.0220 (11) 0.0199 (11) 0.0005 (8) 0.0004 (8) 0.0023 (8)
C15 0.0305 (12) 0.0193 (11) 0.0309 (12) 0.0053 (9) 0.0004 (9) −0.0042 (9)
C16 0.0253 (11) 0.0198 (11) 0.0297 (12) 0.0128 (9) 0.0023 (9) 0.0012 (9)

Geometric parameters (Å, °)

O1—C1 1.360 (2) C4—C5 1.399 (3)
O1—H1A 0.8200 C4—C7 1.521 (3)
N1—C10 1.360 (2) C5—C6 1.371 (3)
N1—N2 1.366 (2) C5—H5A 0.9300
N1—C7 1.462 (2) C6—H6A 0.9300
N2—C8 1.325 (2) C8—C9 1.390 (3)
N3—C13 1.358 (2) C8—H8A 0.9300
N3—N4 1.363 (2) C9—C10 1.362 (3)
N3—C7 1.473 (2) C9—H9A 0.9300
N4—C11 1.330 (2) C10—H10A 0.9300
N5—C16 1.349 (2) C11—C12 1.391 (3)
N5—N6 1.361 (2) C11—H11A 0.9300
N5—C7 1.470 (2) C12—C13 1.361 (3)
N6—C14 1.323 (2) C12—H12A 0.9300
C1—C6 1.385 (3) C13—H13A 0.9300
C1—C2 1.387 (3) C14—C15 1.393 (3)
C2—C3 1.382 (3) C14—H14A 0.9300
C2—H2A 0.9300 C15—C16 1.369 (3)
C3—C4 1.385 (2) C15—H15A 0.9300
C3—H3A 0.9300 C16—H16A 0.9300
C1—O1—H1A 109.5 N1—C7—N3 109.47 (14)
C10—N1—N2 111.56 (15) N5—C7—N3 107.01 (14)
C10—N1—C7 128.86 (15) N1—C7—C4 110.73 (14)
N2—N1—C7 118.61 (14) N5—C7—C4 113.65 (14)
C8—N2—N1 104.13 (15) N3—C7—C4 108.88 (14)
C13—N3—N4 111.24 (14) N2—C8—C9 112.15 (18)
C13—N3—C7 130.58 (16) N2—C8—H8A 123.9
N4—N3—C7 117.89 (14) C9—C8—H8A 123.9
C11—N4—N3 104.65 (15) C10—C9—C8 105.46 (18)
C16—N5—N6 112.33 (15) C10—C9—H9A 127.3
C16—N5—C7 129.11 (15) C8—C9—H9A 127.3
N6—N5—C7 118.30 (14) N1—C10—C9 106.65 (17)
C14—N6—N5 103.95 (14) N1—C10—H10A 126.7
O1—C1—C6 117.37 (17) C9—C10—H10A 126.7
O1—C1—C2 123.26 (17) N4—C11—C12 111.55 (17)
C6—C1—C2 119.36 (17) N4—C11—H11A 124.2
C3—C2—C1 120.19 (17) C12—C11—H11A 124.2
C3—C2—H2A 119.9 C13—C12—C11 105.54 (17)
C1—C2—H2A 119.9 C13—C12—H12A 127.2
C2—C3—C4 120.83 (17) C11—C12—H12A 127.2
C2—C3—H3A 119.6 N3—C13—C12 107.00 (18)
C4—C3—H3A 119.6 N3—C13—H13A 126.5
C3—C4—C5 118.31 (17) C12—C13—H13A 126.5
C3—C4—C7 123.42 (16) N6—C14—C15 112.14 (17)
C5—C4—C7 118.25 (16) N6—C14—H14A 123.9
C6—C5—C4 121.01 (17) C15—C14—H14A 123.9
C6—C5—H5A 119.5 C16—C15—C14 105.15 (17)
C4—C5—H5A 119.5 C16—C15—H15A 127.4
C5—C6—C1 120.22 (17) C14—C15—H15A 127.4
C5—C6—H6A 119.9 N5—C16—C15 106.41 (17)
C1—C6—H6A 119.9 N5—C16—H16A 126.8
N1—C7—N5 106.98 (14) C15—C16—H16A 126.8

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O1—H1A···N4i 0.82 2.02 2.836 (2) 173.

Symmetry codes: (i) −x+2, −y+2, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: PK2340).

References

  1. Altomare, A., Burla, M. C., Camalli, M., Cascarano, G. L., Giacovazzo, C., Guagliardi, A., Moliterni, A. G. G., Polidori, G. & Spagna, R. (1999). J. Appl. Cryst. 32, 115–119.
  2. Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
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  4. Humphrey, E. R., Mann, K. L. V., Reeves, Z. R., Behrendt, A., Jeffery, J. C., Maher, J. P., McCleverty, J. A. & Ward, M. D. (1999). New J. Chem. 23, 417–423.
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  8. Persistence of Vision Team (2004). POV-RAY Persistence of Vision Raytracer Pty. Ltd, Victoria, Australia. http://www.povray.org/
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  10. Reger, D. L., Grattan, T. C., Brown, K. J., Little, C. A., Lamba, J. J. S., Rheingold, A. L. & Sommer, R. D. (2000). J. Organomet. Chem. 607, 120–128.
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  14. Trofimenko, S. (1999). Scorpionates: The Coordination Chemistry of Polypyrazolylborate Ligands London: Imperial College Press.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811043042/pk2340sup1.cif

e-67-o3045-sup1.cif (21.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811043042/pk2340Isup2.hkl

e-67-o3045-Isup2.hkl (128.1KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811043042/pk2340Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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