Abstract
The title compound, C16H14N6O, was prepared by the condensation of 4-(trifluoromethyl)phenol and sodium pyrazol-1-ide in a yield of 58%. The dihedral angles formed by the planes of the pyrazole rings are 50.7 (2), 71.2 (3) and 95.8 (2)°. The molecules are associated into dimers by pairs of intermolecular O—H⋯N hydrogen bonds involving the hydroxy groups and pyrazole N atoms. In addition, π–π stacking between the phenol rings of these inversion-related dimers is observed, with a ring centroid-to-centroid distance of 3.9247 (10) Å.
Related literature
For the preparation and coordination chemistry of tris(pyrazolyl)borates and tris(pyrazolyl)methanes, see: Trofimenko (1966 ▶, 1970 ▶, 1999 ▶); Pettinari & Pettinari (2005 ▶); Reger et al. (2000 ▶). For the chemistry of tris(pyrazolyl)methane derivatives, see: Humphrey et al. (1999 ▶). For similar structures, see: Liddle & Gardinier (2007 ▶).
Experimental
Crystal data
C16H14N6O
M r = 306.33
Triclinic,
a = 8.5065 (17) Å
b = 8.6829 (17) Å
c = 10.815 (2) Å
α = 96.97 (3)°
β = 91.51 (2)°
γ = 109.40 (3)°
V = 746.0 (3) Å3
Z = 2
Mo Kα radiation
μ = 0.09 mm−1
T = 153 K
0.30 × 0.28 × 0.20 mm
Data collection
Nonius KappaCCD diffractometer
Absorption correction: Gaussian (XPREP in SHELXTL; Sheldrick, 2008 ▶) T min = 0.973, T max = 0.983
4225 measured reflections
2609 independent reflections
1975 reflections with I > 2σ(I)
R int = 0.025
Refinement
R[F 2 > 2σ(F 2)] = 0.043
wR(F 2) = 0.099
S = 1.07
2609 reflections
209 parameters
H-atom parameters constrained
Δρmax = 0.18 e Å−3
Δρmin = −0.27 e Å−3
Data collection: COLLECT (Nonius, 1998 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO-SMN (Otwinowski & Minor, 1997 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: XL in SHELXTL/PC (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and POV-RAY (Persistence of Vision Team, 2004 ▶); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008 ▶) and WinGX (Farrugia, 1999 ▶).
Supplementary Material
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811043042/pk2340sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811043042/pk2340Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811043042/pk2340Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| O1—H1A⋯N4i | 0.82 | 2.02 | 2.836 (2) | 173 |
Symmetry code: (i)
.
Acknowledgments
The authors gratefully acknowledge the Robert A. Welch Foundation (grant No. F-1631), the National Science Foundation (grant Nos. CHE-0741973 and CHE-0847763), the Advanced Research Program of the Texas Higher Education Coordinating Board (grant No. 01916-090-2010) and the University of Texas at Austin for financial support of this research.
supplementary crystallographic information
Comment
Since seminal reports on tris(pyrazolyl)borates and tris(pyrazolyl)methanes (Trofimenko, 1966, 1970), variations on these ligands have been widely studied. Currently, there are great research efforts to study ligands of this type that are functionalized at the back boron or methine positions. The synthesis and coordination chemistry of aryltris(pyrazolyl)borates have also been well investigated, which has allowed significant advances in iron(II) spin-crossover chemistry. However, the chemistry of analogous tris(pyrazolyl)methane derivatives is almost unknown. Herein, we demonstrate the preparation of a new tris(pyrazolyl)methane derivative, 4-[tris(1H-pyrazol-1-yl)methyl]phenol, using a one-pot synthesis method with 4-(trifluoromethyl)phenol and freshly prepared sodium pyrazol-1-ide to give the desired product in good yield.
The solid state structure of 4-[tris(1H-pyrazol-1-yl)methyl]phenol can be seen in Fig. 1. There are two molecules in the unit cell. The molecules are associated into dimers by pairs of intermolecular O—H···N hydrogen bonds involving the hydroxyl groups and pyrazole N atoms. In addition, π–π stacking between the phenol rings of these inversion-related (-x + 2, -y + 2, -z) dimers is observed with a ring centroid-to-centroid distance of 3.9247 (10) Å.
Experimental
The title compound was prepared by refluxing 4-(trifluoromethyl)phenol (0.162 g, 1.0 mmol) and freshly prepared sodium pyrazol-1-ide (0.361 g, 4.0 mmol) in tetrahydrofuran (20 ml) for 12 h under a nitrogen atomsphere. The desired product was purified by column chromatography on silica gel using CH2Cl2 as the eluent with a yield of 58%. Single crystals suitable for X-ray diffraction were obtained via slow evaporation from a methanol solution.
Refinement
All H atoms were positioned geometrically and refined using a riding model, with C—H = 0.95 Å, and O—H = 0.82 Å. Uiso(H) values were set to 1.2Ueq(C) or 1.5Ueq(O).
Figures
Fig. 1.
Ellipsoid plot of C16H14N6O showing selected atoms at 30% probability level.
Fig. 2.
A packing diagram of C16H14N6O.
Crystal data
| C16H14N6O | Z = 2 |
| Mr = 306.33 | F(000) = 320 |
| Triclinic, P1 | Dx = 1.364 Mg m−3 |
| Hall symbol: -P 1 | Melting point: 443 K |
| a = 8.5065 (17) Å | Mo Kα radiation, λ = 0.71073 Å |
| b = 8.6829 (17) Å | Cell parameters from 2208 reflections |
| c = 10.815 (2) Å | θ = 2.9–27.5° |
| α = 96.97 (3)° | µ = 0.09 mm−1 |
| β = 91.51 (2)° | T = 153 K |
| γ = 109.40 (3)° | Block, colourless |
| V = 746.0 (3) Å3 | 0.30 × 0.28 × 0.20 mm |
Data collection
| Nonius KappaCCD diffractometer | 2609 independent reflections |
| Radiation source: fine-focus sealed tube | 1975 reflections with I > 2σ(I) |
| graphite | Rint = 0.025 |
| ω scans | θmax = 25.0°, θmin = 2.9° |
| Absorption correction: gaussian (XPREP in SHELXTL; Sheldrick, 2008) | h = −10→10 |
| Tmin = 0.973, Tmax = 0.983 | k = −10→10 |
| 4225 measured reflections | l = −12→11 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.043 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.099 | H-atom parameters constrained |
| S = 1.07 | w = 1/[σ2(Fo2) + (0.038P)2 + 0.1787P] where P = (Fo2 + 2Fc2)/3 |
| 2609 reflections | (Δ/σ)max < 0.001 |
| 209 parameters | Δρmax = 0.18 e Å−3 |
| 0 restraints | Δρmin = −0.27 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| O1 | 1.00800 (16) | 1.32161 (15) | 0.03852 (13) | 0.0266 (3) | |
| H1A | 0.9790 | 1.2970 | −0.0362 | 0.054 (8)* | |
| N1 | 0.74972 (17) | 0.78542 (18) | 0.40566 (13) | 0.0180 (4) | |
| N2 | 0.69159 (19) | 0.65739 (19) | 0.47332 (15) | 0.0244 (4) | |
| N3 | 0.98104 (17) | 0.72693 (18) | 0.31464 (14) | 0.0181 (4) | |
| N4 | 1.08607 (18) | 0.73336 (19) | 0.22092 (15) | 0.0237 (4) | |
| N5 | 0.70790 (17) | 0.60541 (17) | 0.21695 (14) | 0.0173 (4) | |
| N6 | 0.54566 (18) | 0.59411 (18) | 0.19620 (14) | 0.0216 (4) | |
| C1 | 0.9528 (2) | 1.1846 (2) | 0.09625 (17) | 0.0197 (4) | |
| C2 | 0.8251 (2) | 1.0424 (2) | 0.04486 (17) | 0.0213 (4) | |
| H2A | 0.7695 | 1.0394 | −0.0311 | 0.026* | |
| C3 | 0.7802 (2) | 0.9051 (2) | 0.10623 (16) | 0.0191 (4) | |
| H3A | 0.6944 | 0.8103 | 0.0711 | 0.023* | |
| C4 | 0.8613 (2) | 0.9069 (2) | 0.21937 (16) | 0.0165 (4) | |
| C5 | 0.9873 (2) | 1.0523 (2) | 0.27129 (17) | 0.0206 (4) | |
| H5A | 1.0427 | 1.0560 | 0.3475 | 0.025* | |
| C6 | 1.0305 (2) | 1.1896 (2) | 0.21160 (17) | 0.0213 (4) | |
| H6A | 1.1121 | 1.2863 | 0.2487 | 0.026* | |
| C7 | 0.8240 (2) | 0.7575 (2) | 0.28833 (16) | 0.0173 (4) | |
| C8 | 0.6124 (2) | 0.7133 (2) | 0.56240 (18) | 0.0250 (5) | |
| H8A | 0.5599 | 0.6528 | 0.6241 | 0.030* | |
| C9 | 0.6169 (2) | 0.8729 (2) | 0.55301 (18) | 0.0263 (5) | |
| H9A | 0.5710 | 0.9371 | 0.6055 | 0.032* | |
| C10 | 0.7026 (2) | 0.9154 (2) | 0.45071 (17) | 0.0208 (4) | |
| H10A | 0.7246 | 1.0141 | 0.4180 | 0.025* | |
| C11 | 1.2086 (2) | 0.6894 (2) | 0.2675 (2) | 0.0268 (5) | |
| H11A | 1.2999 | 0.6832 | 0.2244 | 0.032* | |
| C12 | 1.1831 (2) | 0.6538 (2) | 0.3889 (2) | 0.0281 (5) | |
| H12A | 1.2517 | 0.6210 | 0.4405 | 0.034* | |
| C13 | 1.0367 (2) | 0.6771 (2) | 0.41634 (18) | 0.0225 (5) | |
| H13A | 0.9846 | 0.6617 | 0.4906 | 0.027* | |
| C14 | 0.4724 (2) | 0.4422 (2) | 0.13858 (17) | 0.0220 (4) | |
| H14A | 0.3599 | 0.3985 | 0.1111 | 0.026* | |
| C15 | 0.5835 (2) | 0.3552 (2) | 0.12394 (19) | 0.0284 (5) | |
| H15A | 0.5602 | 0.2468 | 0.0870 | 0.034* | |
| C16 | 0.7341 (2) | 0.4636 (2) | 0.17562 (18) | 0.0238 (5) | |
| H16A | 0.8347 | 0.4434 | 0.1811 | 0.029* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.0374 (8) | 0.0219 (8) | 0.0236 (9) | 0.0116 (6) | 0.0085 (6) | 0.0092 (6) |
| N1 | 0.0197 (8) | 0.0170 (8) | 0.0171 (8) | 0.0049 (7) | 0.0029 (7) | 0.0049 (7) |
| N2 | 0.0284 (9) | 0.0226 (9) | 0.0218 (9) | 0.0056 (7) | 0.0055 (7) | 0.0093 (7) |
| N3 | 0.0155 (8) | 0.0185 (9) | 0.0209 (9) | 0.0065 (6) | 0.0013 (7) | 0.0034 (7) |
| N4 | 0.0187 (8) | 0.0256 (9) | 0.0297 (10) | 0.0101 (7) | 0.0072 (7) | 0.0066 (8) |
| N5 | 0.0149 (8) | 0.0167 (9) | 0.0207 (9) | 0.0063 (6) | 0.0007 (6) | 0.0017 (7) |
| N6 | 0.0152 (8) | 0.0231 (9) | 0.0255 (9) | 0.0057 (7) | 0.0005 (7) | 0.0023 (7) |
| C1 | 0.0231 (10) | 0.0180 (11) | 0.0234 (11) | 0.0126 (8) | 0.0098 (8) | 0.0056 (8) |
| C2 | 0.0241 (10) | 0.0261 (11) | 0.0178 (10) | 0.0133 (9) | 0.0009 (8) | 0.0044 (9) |
| C3 | 0.0184 (10) | 0.0202 (11) | 0.0183 (10) | 0.0067 (8) | 0.0003 (8) | 0.0001 (8) |
| C4 | 0.0156 (9) | 0.0167 (10) | 0.0189 (10) | 0.0077 (8) | 0.0041 (8) | 0.0025 (8) |
| C5 | 0.0181 (10) | 0.0235 (11) | 0.0199 (11) | 0.0070 (8) | −0.0014 (8) | 0.0020 (8) |
| C6 | 0.0210 (10) | 0.0167 (10) | 0.0235 (11) | 0.0032 (8) | 0.0030 (8) | 0.0011 (8) |
| C7 | 0.0145 (9) | 0.0186 (10) | 0.0188 (10) | 0.0061 (8) | 0.0008 (8) | 0.0017 (8) |
| C8 | 0.0210 (10) | 0.0329 (12) | 0.0185 (11) | 0.0049 (9) | 0.0037 (8) | 0.0048 (9) |
| C9 | 0.0228 (11) | 0.0321 (12) | 0.0248 (11) | 0.0120 (9) | 0.0039 (9) | −0.0010 (9) |
| C10 | 0.0206 (10) | 0.0201 (10) | 0.0241 (11) | 0.0106 (8) | −0.0002 (8) | 0.0013 (8) |
| C11 | 0.0181 (10) | 0.0227 (11) | 0.0415 (14) | 0.0090 (9) | 0.0027 (9) | 0.0056 (10) |
| C12 | 0.0228 (11) | 0.0230 (11) | 0.0400 (14) | 0.0101 (9) | −0.0097 (9) | 0.0057 (10) |
| C13 | 0.0255 (11) | 0.0191 (11) | 0.0223 (11) | 0.0066 (8) | −0.0046 (8) | 0.0046 (8) |
| C14 | 0.0190 (10) | 0.0220 (11) | 0.0199 (11) | 0.0005 (8) | 0.0004 (8) | 0.0023 (8) |
| C15 | 0.0305 (12) | 0.0193 (11) | 0.0309 (12) | 0.0053 (9) | 0.0004 (9) | −0.0042 (9) |
| C16 | 0.0253 (11) | 0.0198 (11) | 0.0297 (12) | 0.0128 (9) | 0.0023 (9) | 0.0012 (9) |
Geometric parameters (Å, °)
| O1—C1 | 1.360 (2) | C4—C5 | 1.399 (3) |
| O1—H1A | 0.8200 | C4—C7 | 1.521 (3) |
| N1—C10 | 1.360 (2) | C5—C6 | 1.371 (3) |
| N1—N2 | 1.366 (2) | C5—H5A | 0.9300 |
| N1—C7 | 1.462 (2) | C6—H6A | 0.9300 |
| N2—C8 | 1.325 (2) | C8—C9 | 1.390 (3) |
| N3—C13 | 1.358 (2) | C8—H8A | 0.9300 |
| N3—N4 | 1.363 (2) | C9—C10 | 1.362 (3) |
| N3—C7 | 1.473 (2) | C9—H9A | 0.9300 |
| N4—C11 | 1.330 (2) | C10—H10A | 0.9300 |
| N5—C16 | 1.349 (2) | C11—C12 | 1.391 (3) |
| N5—N6 | 1.361 (2) | C11—H11A | 0.9300 |
| N5—C7 | 1.470 (2) | C12—C13 | 1.361 (3) |
| N6—C14 | 1.323 (2) | C12—H12A | 0.9300 |
| C1—C6 | 1.385 (3) | C13—H13A | 0.9300 |
| C1—C2 | 1.387 (3) | C14—C15 | 1.393 (3) |
| C2—C3 | 1.382 (3) | C14—H14A | 0.9300 |
| C2—H2A | 0.9300 | C15—C16 | 1.369 (3) |
| C3—C4 | 1.385 (2) | C15—H15A | 0.9300 |
| C3—H3A | 0.9300 | C16—H16A | 0.9300 |
| C1—O1—H1A | 109.5 | N1—C7—N3 | 109.47 (14) |
| C10—N1—N2 | 111.56 (15) | N5—C7—N3 | 107.01 (14) |
| C10—N1—C7 | 128.86 (15) | N1—C7—C4 | 110.73 (14) |
| N2—N1—C7 | 118.61 (14) | N5—C7—C4 | 113.65 (14) |
| C8—N2—N1 | 104.13 (15) | N3—C7—C4 | 108.88 (14) |
| C13—N3—N4 | 111.24 (14) | N2—C8—C9 | 112.15 (18) |
| C13—N3—C7 | 130.58 (16) | N2—C8—H8A | 123.9 |
| N4—N3—C7 | 117.89 (14) | C9—C8—H8A | 123.9 |
| C11—N4—N3 | 104.65 (15) | C10—C9—C8 | 105.46 (18) |
| C16—N5—N6 | 112.33 (15) | C10—C9—H9A | 127.3 |
| C16—N5—C7 | 129.11 (15) | C8—C9—H9A | 127.3 |
| N6—N5—C7 | 118.30 (14) | N1—C10—C9 | 106.65 (17) |
| C14—N6—N5 | 103.95 (14) | N1—C10—H10A | 126.7 |
| O1—C1—C6 | 117.37 (17) | C9—C10—H10A | 126.7 |
| O1—C1—C2 | 123.26 (17) | N4—C11—C12 | 111.55 (17) |
| C6—C1—C2 | 119.36 (17) | N4—C11—H11A | 124.2 |
| C3—C2—C1 | 120.19 (17) | C12—C11—H11A | 124.2 |
| C3—C2—H2A | 119.9 | C13—C12—C11 | 105.54 (17) |
| C1—C2—H2A | 119.9 | C13—C12—H12A | 127.2 |
| C2—C3—C4 | 120.83 (17) | C11—C12—H12A | 127.2 |
| C2—C3—H3A | 119.6 | N3—C13—C12 | 107.00 (18) |
| C4—C3—H3A | 119.6 | N3—C13—H13A | 126.5 |
| C3—C4—C5 | 118.31 (17) | C12—C13—H13A | 126.5 |
| C3—C4—C7 | 123.42 (16) | N6—C14—C15 | 112.14 (17) |
| C5—C4—C7 | 118.25 (16) | N6—C14—H14A | 123.9 |
| C6—C5—C4 | 121.01 (17) | C15—C14—H14A | 123.9 |
| C6—C5—H5A | 119.5 | C16—C15—C14 | 105.15 (17) |
| C4—C5—H5A | 119.5 | C16—C15—H15A | 127.4 |
| C5—C6—C1 | 120.22 (17) | C14—C15—H15A | 127.4 |
| C5—C6—H6A | 119.9 | N5—C16—C15 | 106.41 (17) |
| C1—C6—H6A | 119.9 | N5—C16—H16A | 126.8 |
| N1—C7—N5 | 106.98 (14) | C15—C16—H16A | 126.8 |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| O1—H1A···N4i | 0.82 | 2.02 | 2.836 (2) | 173. |
Symmetry codes: (i) −x+2, −y+2, −z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: PK2340).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811043042/pk2340sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811043042/pk2340Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811043042/pk2340Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


