Abstract
The title molecule, C12H10N2O3, is twisted, the dihedral angle between the rings being 61.16 (13)°. The nitro group is approximately coplanar with the pyridine ring to which it is attached [O—N—C—C torsion angle = −178.1 (3)°]. Supramolecular chains along [010] and mediated by C—H⋯O and π–π [centroid(pyridyl)–(benzene) distance = 3.8259 (18) Å] contacts feature in the crystal packing.
Related literature
For the structure of a related nitro-pyridine derivative, see: Nasir et al. (2010 ▶).
Experimental
Crystal data
C12H10N2O3
M r = 230.22
Orthorhombic,
a = 7.2818 (18) Å
b = 11.977 (2) Å
c = 25.362 (5) Å
V = 2211.9 (8) Å3
Z = 8
Mo Kα radiation
μ = 0.10 mm−1
T = 293 K
0.20 × 0.18 × 0.07 mm
Data collection
Bruker SMART APEX diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.670, T max = 0.746
15887 measured reflections
1951 independent reflections
1089 reflections with I > 2σ(I)
R int = 0.074
Refinement
R[F 2 > 2σ(F 2)] = 0.047
wR(F 2) = 0.147
S = 1.02
1951 reflections
156 parameters
H-atom parameters constrained
Δρmax = 0.15 e Å−3
Δρmin = −0.13 e Å−3
Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶).
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811044047/hg5116sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811044047/hg5116Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811044047/hg5116Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
---|---|---|---|---|
C5—H5⋯O(3)i | 0.93 | 2.43 | 3.135 (3) | 132 |
Symmetry code: (i) .
Acknowledgments
We thank the University of Malaya (grant No. RG027/ 09AFR) for supporting this study.
supplementary crystallographic information
Comment
The synthesis and crystal structure determination of the title compound, (I), was determined in connection with studies of related species (Nasir et al., 2010). In (I), the dihedral angle formed between the pyridyl and benzene rings is 61.16 (13)°, indicating significant twisting in the molecule. The nitro group is co-planar with the pyridyl ring to which it is connected as seen in the value of the O2—N2—C4—C3 torsion angle of -178.1 (3)°.
The most prominent features in the crystal packing are the formation of C—H···O, Table 1, and π–π interactions. The latter occur between the pyridyl and benzene rings with the separation between the ring centroids being 3.8259 (18) Å for symmetry operation 3/2 - x, 1/2 + y, z. These interactions lead to supramolecular chains along the b axis, Fig. 2, which pack as shown in Fig. 3.
Experimental
p-Cresol (2.16 g, 20 mmol) and sodium hydroxide (0.80 g, 20 mmol) were dissolved in water (50 ml) and to the solution was added 2-chloro-5-nitropyridine (3.17 g, 20 mmol) dissolved in THF (50 ml). The mixture was heated for 5 h. Water was added and the organic phase extracted with chloroform. The chloroform solution was dried over sodium sulfate; slow evaporation led to the formation of colourless crystals.
Refinement
Hydrogen atoms were placed at calculated positions (C—H 0.93–0.96 Å) and were treated as riding on their parent carbon atoms, with U(H) set to 1.2–1.5Ueq(C).
Figures
Fig. 1.
The molecular structure of (I) showing the atom-labelling scheme and displacement ellipsoids at the 35% probability level.
Fig. 2.
Supramolecular chain along [010] in (I) sustained by C—H···O and π–π interactions, shown as orange and purple dashed lines, respectively.
Fig. 3.
Unit-cell contents for (I) shown in projection down the b axis highlighting the packing of supramolecular chains.
Crystal data
C12H10N2O3 | F(000) = 960 |
Mr = 230.22 | Dx = 1.383 Mg m−3 |
Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ac 2ab | Cell parameters from 1038 reflections |
a = 7.2818 (18) Å | θ = 3.2–19.7° |
b = 11.977 (2) Å | µ = 0.10 mm−1 |
c = 25.362 (5) Å | T = 293 K |
V = 2211.9 (8) Å3 | Block, colourless |
Z = 8 | 0.20 × 0.18 × 0.07 mm |
Data collection
Bruker SMART APEX diffractometer | 1951 independent reflections |
Radiation source: fine-focus sealed tube | 1089 reflections with I > 2σ(I) |
graphite | Rint = 0.074 |
ω scans | θmax = 25.0°, θmin = 1.6° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −8→8 |
Tmin = 0.670, Tmax = 0.746 | k = −14→14 |
15887 measured reflections | l = −30→30 |
Refinement
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.047 | H-atom parameters constrained |
wR(F2) = 0.147 | w = 1/[σ2(Fo2) + (0.0643P)2 + 0.2807P] where P = (Fo2 + 2Fc2)/3 |
S = 1.02 | (Δ/σ)max = 0.001 |
1951 reflections | Δρmax = 0.15 e Å−3 |
156 parameters | Δρmin = −0.13 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0060 (13) |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
x | y | z | Uiso*/Ueq | ||
O1 | 0.5542 (3) | 0.41426 (14) | 0.32750 (7) | 0.0725 (6) | |
O2 | 0.8217 (3) | 0.59307 (19) | 0.54024 (9) | 0.1039 (8) | |
O3 | 0.7135 (4) | 0.74378 (19) | 0.50863 (8) | 0.1135 (9) | |
N1 | 0.6779 (3) | 0.41528 (17) | 0.41124 (9) | 0.0699 (7) | |
N2 | 0.7486 (4) | 0.6456 (2) | 0.50490 (10) | 0.0758 (7) | |
C1 | 0.6005 (4) | 0.4707 (2) | 0.37191 (11) | 0.0595 (7) | |
C2 | 0.5682 (3) | 0.5841 (2) | 0.37215 (10) | 0.0613 (7) | |
H2 | 0.5145 | 0.6191 | 0.3433 | 0.074* | |
C3 | 0.6168 (4) | 0.6439 (2) | 0.41563 (10) | 0.0648 (7) | |
H3 | 0.5978 | 0.7206 | 0.4173 | 0.078* | |
C4 | 0.6950 (4) | 0.5868 (2) | 0.45701 (10) | 0.0576 (7) | |
C5 | 0.7247 (4) | 0.4751 (2) | 0.45359 (11) | 0.0675 (8) | |
H5 | 0.7798 | 0.4389 | 0.4819 | 0.081* | |
C6 | 0.5381 (4) | 0.2976 (2) | 0.32825 (10) | 0.0588 (7) | |
C7 | 0.6205 (4) | 0.2394 (2) | 0.28825 (9) | 0.0625 (7) | |
H7 | 0.6943 | 0.2759 | 0.2638 | 0.075* | |
C8 | 0.5920 (4) | 0.1252 (2) | 0.28494 (10) | 0.0639 (7) | |
H8 | 0.6459 | 0.0857 | 0.2574 | 0.077* | |
C9 | 0.4864 (4) | 0.0685 (2) | 0.32118 (10) | 0.0601 (7) | |
C10 | 0.4088 (4) | 0.1301 (2) | 0.36136 (11) | 0.0675 (8) | |
H10 | 0.3393 | 0.0936 | 0.3868 | 0.081* | |
C11 | 0.4313 (4) | 0.2442 (2) | 0.36485 (10) | 0.0685 (8) | |
H11 | 0.3747 | 0.2844 | 0.3917 | 0.082* | |
C12 | 0.4559 (4) | −0.0556 (2) | 0.31771 (12) | 0.0854 (9) | |
H12A | 0.4765 | −0.0888 | 0.3517 | 0.128* | |
H12B | 0.5397 | −0.0871 | 0.2926 | 0.128* | |
H12C | 0.3320 | −0.0700 | 0.3067 | 0.128* |
Atomic displacement parameters (Å2)
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0976 (16) | 0.0589 (12) | 0.0612 (11) | 0.0000 (10) | −0.0111 (11) | 0.0016 (9) |
O2 | 0.142 (2) | 0.0885 (16) | 0.0806 (14) | 0.0159 (14) | −0.0259 (15) | −0.0119 (13) |
O3 | 0.210 (3) | 0.0523 (12) | 0.0784 (14) | −0.0020 (15) | 0.0069 (16) | −0.0057 (11) |
N1 | 0.0881 (17) | 0.0516 (13) | 0.0699 (14) | 0.0073 (11) | −0.0110 (14) | −0.0033 (12) |
N2 | 0.104 (2) | 0.0597 (16) | 0.0639 (15) | −0.0023 (14) | 0.0124 (14) | −0.0004 (13) |
C1 | 0.0622 (17) | 0.0557 (16) | 0.0607 (16) | 0.0015 (13) | 0.0020 (14) | 0.0036 (14) |
C2 | 0.0640 (18) | 0.0586 (17) | 0.0615 (16) | 0.0076 (13) | 0.0040 (14) | 0.0104 (14) |
C3 | 0.0754 (19) | 0.0496 (15) | 0.0695 (17) | 0.0059 (14) | 0.0120 (16) | 0.0042 (14) |
C4 | 0.0645 (17) | 0.0508 (16) | 0.0574 (15) | −0.0002 (13) | 0.0085 (14) | −0.0002 (13) |
C5 | 0.081 (2) | 0.0566 (17) | 0.0650 (17) | 0.0056 (15) | −0.0076 (15) | 0.0019 (14) |
C6 | 0.0642 (18) | 0.0568 (17) | 0.0555 (16) | 0.0006 (13) | −0.0087 (14) | −0.0002 (13) |
C7 | 0.0632 (17) | 0.0729 (18) | 0.0513 (15) | −0.0010 (14) | −0.0007 (13) | 0.0029 (14) |
C8 | 0.0646 (17) | 0.0730 (19) | 0.0541 (15) | 0.0055 (15) | −0.0050 (14) | −0.0100 (14) |
C9 | 0.0536 (16) | 0.0654 (18) | 0.0614 (16) | −0.0024 (14) | −0.0105 (14) | −0.0089 (14) |
C10 | 0.0596 (17) | 0.075 (2) | 0.0683 (18) | −0.0082 (14) | 0.0032 (15) | 0.0007 (15) |
C11 | 0.0697 (19) | 0.0705 (19) | 0.0651 (17) | 0.0041 (15) | 0.0042 (15) | −0.0086 (15) |
C12 | 0.088 (2) | 0.071 (2) | 0.098 (2) | −0.0109 (16) | −0.0140 (19) | −0.0137 (17) |
Geometric parameters (Å, °)
O1—C1 | 1.356 (3) | C6—C11 | 1.369 (3) |
O1—C6 | 1.403 (3) | C6—C7 | 1.369 (3) |
O2—N2 | 1.217 (3) | C7—C8 | 1.386 (4) |
O3—N2 | 1.208 (3) | C7—H7 | 0.9300 |
N1—C1 | 1.324 (3) | C8—C9 | 1.377 (3) |
N1—C5 | 1.336 (3) | C8—H8 | 0.9300 |
N2—C4 | 1.457 (3) | C9—C10 | 1.379 (3) |
C1—C2 | 1.379 (3) | C9—C12 | 1.505 (3) |
C2—C3 | 1.361 (3) | C10—C11 | 1.380 (3) |
C2—H2 | 0.9300 | C10—H10 | 0.9300 |
C3—C4 | 1.376 (3) | C11—H11 | 0.9300 |
C3—H3 | 0.9300 | C12—H12A | 0.9600 |
C4—C5 | 1.358 (3) | C12—H12B | 0.9600 |
C5—H5 | 0.9300 | C12—H12C | 0.9600 |
C1—O1—C6 | 120.4 (2) | C7—C6—O1 | 117.4 (2) |
C1—N1—C5 | 116.4 (2) | C6—C7—C8 | 118.8 (3) |
O3—N2—O2 | 122.5 (3) | C6—C7—H7 | 120.6 |
O3—N2—C4 | 118.6 (3) | C8—C7—H7 | 120.6 |
O2—N2—C4 | 118.8 (2) | C9—C8—C7 | 122.0 (2) |
N1—C1—O1 | 118.8 (2) | C9—C8—H8 | 119.0 |
N1—C1—C2 | 124.3 (3) | C7—C8—H8 | 119.0 |
O1—C1—C2 | 116.9 (2) | C8—C9—C10 | 117.3 (2) |
C3—C2—C1 | 118.5 (2) | C8—C9—C12 | 122.0 (2) |
C3—C2—H2 | 120.7 | C10—C9—C12 | 120.7 (3) |
C1—C2—H2 | 120.7 | C9—C10—C11 | 121.9 (3) |
C2—C3—C4 | 117.7 (2) | C9—C10—H10 | 119.0 |
C2—C3—H3 | 121.2 | C11—C10—H10 | 119.0 |
C4—C3—H3 | 121.2 | C6—C11—C10 | 119.1 (3) |
C5—C4—C3 | 120.4 (3) | C6—C11—H11 | 120.4 |
C5—C4—N2 | 119.1 (3) | C10—C11—H11 | 120.4 |
C3—C4—N2 | 120.5 (2) | C9—C12—H12A | 109.5 |
N1—C5—C4 | 122.7 (3) | C9—C12—H12B | 109.5 |
N1—C5—H5 | 118.7 | H12A—C12—H12B | 109.5 |
C4—C5—H5 | 118.7 | C9—C12—H12C | 109.5 |
C11—C6—C7 | 120.9 (2) | H12A—C12—H12C | 109.5 |
C11—C6—O1 | 121.5 (2) | H12B—C12—H12C | 109.5 |
C5—N1—C1—O1 | 178.5 (2) | C3—C4—C5—N1 | −1.2 (4) |
C5—N1—C1—C2 | 0.7 (4) | N2—C4—C5—N1 | 179.4 (2) |
C6—O1—C1—N1 | 18.3 (4) | C1—O1—C6—C11 | 52.0 (3) |
C6—O1—C1—C2 | −163.8 (2) | C1—O1—C6—C7 | −133.5 (2) |
N1—C1—C2—C3 | −0.7 (4) | C11—C6—C7—C8 | 0.9 (4) |
O1—C1—C2—C3 | −178.6 (2) | O1—C6—C7—C8 | −173.7 (2) |
C1—C2—C3—C4 | −0.2 (4) | C6—C7—C8—C9 | −1.2 (4) |
C2—C3—C4—C5 | 1.1 (4) | C7—C8—C9—C10 | 0.0 (4) |
C2—C3—C4—N2 | −179.4 (2) | C7—C8—C9—C12 | −179.8 (2) |
O3—N2—C4—C5 | −176.4 (3) | C8—C9—C10—C11 | 1.6 (4) |
O2—N2—C4—C5 | 1.3 (4) | C12—C9—C10—C11 | −178.6 (3) |
O3—N2—C4—C3 | 4.1 (4) | C7—C6—C11—C10 | 0.7 (4) |
O2—N2—C4—C3 | −178.1 (3) | O1—C6—C11—C10 | 175.0 (2) |
C1—N1—C5—C4 | 0.2 (4) | C9—C10—C11—C6 | −1.9 (4) |
Hydrogen-bond geometry (Å, °)
D—H···A | D—H | H···A | D···A | D—H···A |
C5—H5···O(3)i | 0.93 | 2.43 | 3.135 (3) | 132 |
Symmetry codes: (i) −x+3/2, y−1/2, z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HG5116).
References
- Brandenburg, K. (2006). DIAMOND Crystal Impact GbR, Bonn, Germany.
- Bruker (2009). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
- Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
- Nasir, S. B., Abdullah, Z., Fairuz, Z. A., Ng, S. W. & Tiekink, E. R. T. (2010). Acta Cryst. E66, o2428. [DOI] [PMC free article] [PubMed]
- Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811044047/hg5116sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811044047/hg5116Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811044047/hg5116Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report