Skip to main content
Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Oct 29;67(Pt 11):o3087. doi: 10.1107/S1600536811043935

4-[1-(4-Hy­droxy-3-meth­oxy­benz­yl)-1H-benzimidazol-2-yl]-2-meth­oxy­phenol

Zuo-an Xiao a,*, Tao Gao a, Fa-jun Huang a, Ting-ting Jiang a
PMCID: PMC3247474  PMID: 22220092

Abstract

In the title mol­ecule, C22H20N2O4, the dihedral angles between the benzimidazole ring system and the benzene rings are 44.26 (2) and 82.91 (2)°. Intra­molecular O—H⋯O hydrogen bonds occur. In the crystal, O—H⋯N and O—H⋯O hydrogen bonds connect the mol­ecules into a two-dimension network parallel to (10Inline graphic) and weak inter­molecular C—H⋯O hydrogen bonds complete the formation of a three-dimensional network.

Related literature

For the biological appications of benzimidazole compounds, see: Santoro et al. (2000); Sundberg et al. (1977). For related structures, see: Li et al. (2005); Liu et al. (2003); Xi et al. (2006).graphic file with name e-67-o3087-scheme1.jpg

Experimental

Crystal data

  • C22H20N2O4

  • M r = 376.40

  • Monoclinic, Inline graphic

  • a = 7.9717 (9) Å

  • b = 16.4327 (19) Å

  • c = 14.3560 (16) Å

  • β = 95.133 (2)°

  • V = 1873.0 (4) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.09 mm−1

  • T = 298 K

  • 0.20 × 0.20 × 0.20 mm

Data collection

  • Bruker SMART CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.966, T max = 0.983

  • 14067 measured reflections

  • 4625 independent reflections

  • 3718 reflections with I > 2σ(I)

  • R int = 0.064

Refinement

  • R[F 2 > 2σ(F 2)] = 0.058

  • wR(F 2) = 0.154

  • S = 1.06

  • 4625 reflections

  • 261 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.30 e Å−3

  • Δρmin = −0.23 e Å−3

Data collection: SMART (Bruker, 2001); cell refinement: SAINT (Bruker, 2001); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811043935/lh5356sup1.cif

e-67-o3087-sup1.cif (18.9KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811043935/lh5356Isup2.hkl

e-67-o3087-Isup2.hkl (226.6KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811043935/lh5356Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O4—H4A⋯O3 0.89 (2) 2.25 (2) 2.6598 (18) 108.0 (18)
O1—H1A⋯O2 0.85 (3) 2.22 (3) 2.6631 (18) 113 (2)
O4—H4A⋯N2i 0.89 (2) 1.90 (2) 2.7671 (18) 165 (2)
O1—H1A⋯O4ii 0.85 (3) 2.07 (3) 2.7934 (17) 143 (2)
C15—H15B⋯O4iii 0.97 2.59 3.402 (2) 141

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

The authors are grateful to the Science Technology Research Programme of the Education Office of Hubei Province (grant No. Q20092503) for financial support.

supplementary crystallographic information

Comment

Benzimidazole is a common species in biological and biochemical structures (Sundberg et al., 1977; Santoro et al., 2000). Many benzimidazole derivatives have already been reported (e.g. Liu et al., 2003; Li et al., 2005; Xi et al., 2006) and the preparation of the title compound, (I), is part of our effort to contribute to this research. Herein we report the crystal structure of (I).

In the molecule (Fig. 1) the dihedral angles between the benzimidazole ring system and the benzene rings are [C8-C13] 44.26 (2)° and [C16-C21] 82.91 (2)°. All bond lengths and bond angles are as expected. In the crystal, (Fig.2) molecules are linked by O—H···N and O—H···O and weak C—H···O hydrogen bonds to form a three-dimensional network.

Experimental

3-Methoxy-4-hydroxyphenyl formaldehyde (10 mmol) and 1,2-diaminobenzene(5 mmol) were mixed in hot water (333 K), the resulting mixture was stirred and refluxed for 3 h at 333 K. The solution was filtered, and the resulting yellow precipitate was recystallized from methanol to obtain pure product. Yellow crystals suitable for an X-ray diffraction study were obtained by slow evaporation of methanol and dimethyl sulfoxide (1:1 v/v) for two months.

Refinement

All H atoms were placed in idealized positions [CH(methylene)= 0.97 Å, CH(methyl)= 0.96 Å and C—H(aromatic)= 0.93 Å] and included in the refinement in a riding-motion approximation, with Uiso(H)=1.5Ueq (methyl C) and Uiso(H)=1.2Ueq (methylene and aromatic C). Hydrogen atoms bonded to oxygen atoms were located in a difference map and refined freely with Uiso(H)= 1.5Ueq(O).

Figures

Fig. 1.

Fig. 1.

The molecular structure with displacement ellipsoids drawn at the 50% probability level.

Fig. 2.

Fig. 2.

Part of the crystal structure with hydrogen bonds shown as dashed lines.

Crystal data

C22H20N2O4 F(000) = 792
Mr = 376.40 Dx = 1.335 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 5118 reflections
a = 7.9717 (9) Å θ = 2.5–27.7°
b = 16.4327 (19) Å µ = 0.09 mm1
c = 14.3560 (16) Å T = 298 K
β = 95.133 (2)° Block, yellow
V = 1873.0 (4) Å3 0.20 × 0.20 × 0.20 mm
Z = 4

Data collection

Bruker SMART CCD diffractometer 4625 independent reflections
Radiation source: fine-focus sealed tube 3718 reflections with I > 2σ(I)
graphite Rint = 0.064
φ and ω scans θmax = 28.3°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −10→9
Tmin = 0.966, Tmax = 0.983 k = −21→21
14067 measured reflections l = −17→19

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.058 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.154 H atoms treated by a mixture of independent and constrained refinement
S = 1.06 w = 1/[σ2(Fo2) + (0.0713P)2 + 0.3997P] where P = (Fo2 + 2Fc2)/3
4625 reflections (Δ/σ)max = 0.001
261 parameters Δρmax = 0.30 e Å3
0 restraints Δρmin = −0.23 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 0.6594 (2) 0.37261 (10) 0.41671 (11) 0.0434 (4)
C2 0.4947 (2) 0.34793 (10) 0.39288 (11) 0.0402 (4)
C3 0.3707 (3) 0.40430 (12) 0.36173 (13) 0.0558 (5)
H3 0.2600 0.3884 0.3457 0.067*
C4 0.4192 (4) 0.48403 (13) 0.35583 (16) 0.0709 (7)
H4 0.3397 0.5228 0.3348 0.085*
C5 0.5838 (4) 0.50832 (13) 0.38041 (17) 0.0763 (7)
H5 0.6112 0.5631 0.3757 0.092*
C6 0.7085 (3) 0.45372 (12) 0.41172 (15) 0.0635 (6)
H6 0.8186 0.4702 0.4285 0.076*
C7 0.63537 (19) 0.23907 (9) 0.43023 (10) 0.0346 (3)
C8 0.67801 (19) 0.15292 (9) 0.44647 (10) 0.0358 (3)
C9 0.6102 (2) 0.09509 (10) 0.38356 (11) 0.0414 (4)
H9 0.5444 0.1114 0.3301 0.050*
C10 0.6401 (2) 0.01332 (10) 0.40007 (12) 0.0448 (4)
H10 0.5953 −0.0251 0.3572 0.054*
C11 0.7358 (2) −0.01188 (10) 0.47960 (11) 0.0398 (4)
C12 0.8042 (2) 0.04607 (10) 0.54392 (11) 0.0378 (4)
C13 0.7768 (2) 0.12775 (10) 0.52693 (11) 0.0380 (4)
H13 0.8239 0.1662 0.5690 0.046*
C14 0.9622 (3) 0.06781 (14) 0.69039 (15) 0.0690 (6)
H14A 1.0387 0.1045 0.6640 0.104*
H14B 1.0213 0.0374 0.7402 0.104*
H14C 0.8729 0.0983 0.7145 0.104*
C15 0.9316 (2) 0.29712 (12) 0.45926 (12) 0.0464 (4)
H15A 0.9819 0.3390 0.4232 0.056*
H15B 0.9686 0.2449 0.4371 0.056*
C16 0.9974 (2) 0.30661 (9) 0.56100 (11) 0.0378 (4)
C17 1.1623 (2) 0.28316 (10) 0.58622 (11) 0.0388 (4)
H17 1.2285 0.2639 0.5409 0.047*
C18 1.2289 (2) 0.28829 (10) 0.67832 (11) 0.0378 (3)
C19 1.1305 (2) 0.31602 (9) 0.74762 (11) 0.0366 (3)
C20 0.9677 (2) 0.34072 (12) 0.72206 (12) 0.0474 (4)
H20 0.9015 0.3604 0.7672 0.057*
C21 0.9017 (2) 0.33641 (12) 0.62925 (13) 0.0480 (4)
H21 0.7920 0.3538 0.6128 0.058*
C22 1.4913 (2) 0.22847 (16) 0.65140 (15) 0.0648 (6)
H22A 1.4335 0.1811 0.6261 0.097*
H22B 1.5945 0.2124 0.6861 0.097*
H22C 1.5159 0.2640 0.6013 0.097*
N1 0.74880 (17) 0.30206 (8) 0.44092 (10) 0.0397 (3)
N2 0.48213 (17) 0.26436 (8) 0.40272 (9) 0.0383 (3)
O1 0.76267 (19) −0.09254 (7) 0.49438 (9) 0.0544 (4)
H1A 0.804 (3) −0.1004 (16) 0.550 (2) 0.082*
O2 0.89395 (17) 0.01375 (7) 0.62064 (9) 0.0531 (3)
O3 1.38974 (16) 0.26905 (11) 0.71051 (9) 0.0636 (4)
O4 1.19250 (16) 0.31888 (8) 0.83918 (8) 0.0454 (3)
H4A 1.291 (3) 0.2940 (14) 0.8496 (17) 0.068*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.0577 (10) 0.0391 (9) 0.0322 (8) 0.0003 (7) −0.0019 (7) −0.0008 (6)
C2 0.0504 (9) 0.0387 (8) 0.0303 (7) 0.0052 (7) −0.0021 (6) −0.0002 (6)
C3 0.0647 (12) 0.0525 (11) 0.0487 (10) 0.0180 (9) −0.0039 (9) 0.0068 (8)
C4 0.1036 (19) 0.0459 (11) 0.0609 (13) 0.0260 (12) −0.0050 (12) 0.0066 (9)
C5 0.128 (2) 0.0345 (10) 0.0656 (14) 0.0008 (12) 0.0037 (14) 0.0063 (9)
C6 0.0835 (15) 0.0465 (11) 0.0597 (12) −0.0137 (10) 0.0017 (11) −0.0027 (9)
C7 0.0386 (8) 0.0384 (8) 0.0260 (7) 0.0014 (6) −0.0018 (6) −0.0012 (6)
C8 0.0375 (8) 0.0373 (8) 0.0319 (7) 0.0048 (6) −0.0003 (6) 0.0000 (6)
C9 0.0462 (9) 0.0437 (9) 0.0324 (8) 0.0032 (7) −0.0064 (6) 0.0004 (6)
C10 0.0551 (10) 0.0415 (9) 0.0362 (8) −0.0009 (7) −0.0046 (7) −0.0055 (7)
C11 0.0469 (9) 0.0351 (8) 0.0375 (8) 0.0044 (7) 0.0043 (7) 0.0005 (6)
C12 0.0388 (8) 0.0420 (8) 0.0317 (8) 0.0055 (6) −0.0017 (6) 0.0027 (6)
C13 0.0409 (9) 0.0385 (8) 0.0337 (8) 0.0038 (6) −0.0030 (6) −0.0031 (6)
C14 0.0909 (16) 0.0644 (13) 0.0461 (11) 0.0108 (11) −0.0258 (11) 0.0005 (9)
C15 0.0391 (9) 0.0624 (11) 0.0371 (9) −0.0039 (7) 0.0004 (7) −0.0058 (8)
C16 0.0365 (8) 0.0377 (8) 0.0382 (8) −0.0044 (6) −0.0021 (6) −0.0050 (6)
C17 0.0375 (8) 0.0442 (9) 0.0349 (8) −0.0002 (7) 0.0043 (6) −0.0060 (6)
C18 0.0344 (8) 0.0421 (8) 0.0365 (8) 0.0009 (6) 0.0006 (6) −0.0033 (6)
C19 0.0401 (8) 0.0342 (8) 0.0353 (8) −0.0015 (6) 0.0018 (6) −0.0065 (6)
C20 0.0415 (9) 0.0594 (11) 0.0414 (9) 0.0091 (8) 0.0049 (7) −0.0131 (8)
C21 0.0344 (8) 0.0615 (11) 0.0469 (10) 0.0080 (8) −0.0029 (7) −0.0096 (8)
C22 0.0434 (11) 0.0933 (16) 0.0573 (12) 0.0176 (10) 0.0016 (9) −0.0170 (11)
N1 0.0397 (7) 0.0421 (7) 0.0359 (7) −0.0014 (5) −0.0052 (5) −0.0024 (5)
N2 0.0401 (7) 0.0391 (7) 0.0341 (7) 0.0040 (5) −0.0048 (5) 0.0033 (5)
O1 0.0800 (10) 0.0352 (6) 0.0460 (7) 0.0036 (6) −0.0051 (7) 0.0024 (5)
O2 0.0673 (8) 0.0450 (7) 0.0432 (7) 0.0066 (6) −0.0160 (6) 0.0057 (5)
O3 0.0439 (7) 0.1088 (12) 0.0369 (7) 0.0244 (7) −0.0025 (5) −0.0126 (7)
O4 0.0447 (7) 0.0573 (8) 0.0335 (6) 0.0082 (5) 0.0000 (5) −0.0089 (5)

Geometric parameters (Å, °)

C1—C2 1.388 (2) C14—O2 1.411 (2)
C1—N1 1.389 (2) C14—H14A 0.9600
C1—C6 1.393 (3) C14—H14B 0.9600
C2—N2 1.385 (2) C14—H14C 0.9600
C2—C3 1.398 (2) C15—N1 1.460 (2)
C3—C4 1.371 (3) C15—C16 1.515 (2)
C3—H3 0.9300 C15—H15A 0.9700
C4—C5 1.386 (4) C15—H15B 0.9700
C4—H4 0.9300 C16—C21 1.384 (2)
C5—C6 1.384 (3) C16—C17 1.386 (2)
C5—H5 0.9300 C17—C18 1.383 (2)
C6—H6 0.9300 C17—H17 0.9300
C7—N2 1.3171 (19) C18—O3 1.361 (2)
C7—N1 1.374 (2) C18—C19 1.397 (2)
C7—C8 1.470 (2) C19—O4 1.3630 (19)
C8—C9 1.387 (2) C19—C20 1.378 (2)
C8—C13 1.401 (2) C20—C21 1.390 (2)
C9—C10 1.381 (2) C20—H20 0.9300
C9—H9 0.9300 C21—H21 0.9300
C10—C11 1.379 (2) C22—O3 1.394 (2)
C10—H10 0.9300 C22—H22A 0.9600
C11—O1 1.3564 (19) C22—H22B 0.9600
C11—C12 1.402 (2) C22—H22C 0.9600
C12—O2 1.3659 (18) O1—H1A 0.85 (3)
C12—C13 1.378 (2) O4—H4A 0.89 (2)
C13—H13 0.9300
C2—C1—N1 105.72 (14) O2—C14—H14C 109.5
C2—C1—C6 122.08 (17) H14A—C14—H14C 109.5
N1—C1—C6 132.19 (18) H14B—C14—H14C 109.5
N2—C2—C1 109.87 (14) N1—C15—C16 114.96 (14)
N2—C2—C3 129.36 (17) N1—C15—H15A 108.5
C1—C2—C3 120.74 (17) C16—C15—H15A 108.5
C4—C3—C2 117.3 (2) N1—C15—H15B 108.5
C4—C3—H3 121.4 C16—C15—H15B 108.5
C2—C3—H3 121.4 H15A—C15—H15B 107.5
C3—C4—C5 121.7 (2) C21—C16—C17 118.88 (15)
C3—C4—H4 119.2 C21—C16—C15 123.63 (15)
C5—C4—H4 119.2 C17—C16—C15 117.49 (15)
C6—C5—C4 122.1 (2) C18—C17—C16 120.46 (15)
C6—C5—H5 118.9 C18—C17—H17 119.8
C4—C5—H5 118.9 C16—C17—H17 119.8
C5—C6—C1 116.1 (2) O3—C18—C17 125.46 (15)
C5—C6—H6 121.9 O3—C18—C19 113.94 (14)
C1—C6—H6 121.9 C17—C18—C19 120.59 (14)
N2—C7—N1 112.29 (14) O4—C19—C20 119.87 (15)
N2—C7—C8 123.14 (14) O4—C19—C18 121.33 (14)
N1—C7—C8 124.57 (14) C20—C19—C18 118.80 (15)
C9—C8—C13 119.48 (15) C19—C20—C21 120.45 (16)
C9—C8—C7 119.06 (13) C19—C20—H20 119.8
C13—C8—C7 121.35 (14) C21—C20—H20 119.8
C10—C9—C8 120.24 (14) C16—C21—C20 120.77 (15)
C10—C9—H9 119.9 C16—C21—H21 119.6
C8—C9—H9 119.9 C20—C21—H21 119.6
C11—C10—C9 120.55 (15) O3—C22—H22A 109.5
C11—C10—H10 119.7 O3—C22—H22B 109.5
C9—C10—H10 119.7 H22A—C22—H22B 109.5
O1—C11—C10 119.40 (15) O3—C22—H22C 109.5
O1—C11—C12 120.92 (14) H22A—C22—H22C 109.5
C10—C11—C12 119.67 (15) H22B—C22—H22C 109.5
O2—C12—C13 125.79 (14) C7—N1—C1 106.44 (13)
O2—C12—C11 114.31 (14) C7—N1—C15 127.93 (14)
C13—C12—C11 119.90 (14) C1—N1—C15 124.98 (14)
C12—C13—C8 120.15 (14) C7—N2—C2 105.67 (13)
C12—C13—H13 119.9 C11—O1—H1A 109.8 (18)
C8—C13—H13 119.9 C12—O2—C14 117.93 (14)
O2—C14—H14A 109.5 C18—O3—C22 119.05 (14)
O2—C14—H14B 109.5 C19—O4—H4A 112.7 (16)
H14A—C14—H14B 109.5

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O4—H4A···O3 0.89 (2) 2.25 (2) 2.6598 (18) 108.0 (18)
O1—H1A···O2 0.85 (3) 2.22 (3) 2.6631 (18) 113 (2)
O4—H4A···N2i 0.89 (2) 1.90 (2) 2.7671 (18) 165 (2)
O1—H1A···O4ii 0.85 (3) 2.07 (3) 2.7934 (17) 143 (2)
C15—H15B···O4iii 0.97 2.59 3.402 (2) 141.

Symmetry codes: (i) x+1, −y+1/2, z+1/2; (ii) −x+2, y−1/2, −z+3/2; (iii) x, −y+1/2, z−1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LH5356).

References

  1. Bruker (2001). SAINT and SMART Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Li, J., Meng, X.-G. & Liao, Z.-R. (2005). Acta Cryst. E61, o3421–o3423.
  3. Liu, Y.-C., Ma, J.-F., Hu, N.-H. & Jia, H.-Q. (2003). Acta Cryst. E59, m361–m363.
  4. Santoro, S. W., Joyce, G. F., Sakthivel, K., Gramatikova, S. & Barbas, C. F. (2000). J. Am. Chem. Soc. 122, 2433–2439. [DOI] [PubMed]
  5. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  6. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  7. Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]
  8. Sundberg, R. J., Yilmaz, I. & Mente, D. C. (1977). Inorg. Chem. 16, 1470–1476.
  9. Xi, Y., Jiang, M., Li, J., Wang, C., Yan, J.-F. & Zhang, F.-X. (2006). Acta Chim. Sin. 64, 1183–1188.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811043935/lh5356sup1.cif

e-67-o3087-sup1.cif (18.9KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811043935/lh5356Isup2.hkl

e-67-o3087-Isup2.hkl (226.6KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811043935/lh5356Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

RESOURCES