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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Oct 29;67(Pt 11):o3113. doi: 10.1107/S1600536811043716

3-(3-Fluoro­phenyl­sulfin­yl)-2,4,6-trimethyl-1-benzofuran

Pil Ja Seo a, Hong Dae Choi a, Byeng Wha Son b, Uk Lee b,*
PMCID: PMC3247498  PMID: 22220116

Abstract

In the title compound, C17H15FO2S, the 3-fluoro­phenyl ring makes a dihedral angle of 78.38 (4)° with the mean plane of the benzofuran fragment. In the crystal, mol­ecules are linked by weak C—H⋯O and C—H⋯π inter­actions. The crystal structure also exhibits a slipped π–π inter­action between the furan and benzene rings of neighbouring mol­ecules [centroid–centroid distances = 3.628 (2) Å, inter­planar distance = 3.417 (2) Å and slippage = 1.219 (2) Å].

Related literature

For the pharmacological activity of benzofuran compounds, see: Aslam et al. (2009); Galal et al. (2009); Khan et al. (2005). For natural products with benzofuran rings, see: Akgul & Anil (2003); Soekamto et al. (2003). For the crystal structures of related compounds, see: Choi et al. (2010a ,b ). graphic file with name e-67-o3113-scheme1.jpg

Experimental

Crystal data

  • C17H15FO2S

  • M r = 302.35

  • Triclinic, Inline graphic

  • a = 6.8561 (2) Å

  • b = 8.0705 (2) Å

  • c = 13.9069 (3) Å

  • α = 103.719 (1)°

  • β = 91.280 (1)°

  • γ = 106.973 (1)°

  • V = 711.50 (3) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.24 mm−1

  • T = 173 K

  • 0.36 × 0.20 × 0.17 mm

Data collection

  • Bruker SMART APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2009) T min = 0.919, T max = 0.960

  • 12726 measured reflections

  • 3257 independent reflections

  • 2971 reflections with I > 2σ(I)

  • R int = 0.023

Refinement

  • R[F 2 > 2σ(F 2)] = 0.035

  • wR(F 2) = 0.098

  • S = 1.06

  • 3257 reflections

  • 193 parameters

  • H-atom parameters constrained

  • Δρmax = 0.31 e Å−3

  • Δρmin = −0.29 e Å−3

Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 1998); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811043716/mw2033sup1.cif

e-67-o3113-sup1.cif (24.1KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811043716/mw2033Isup2.hkl

e-67-o3113-Isup2.hkl (159.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811043716/mw2033Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

Cg2 is the centroid of the C2–C7 benzene ring.

D—H⋯A D—H H⋯A DA D—H⋯A
C11—H11B⋯O2i 0.98 2.30 3.2727 (18) 172
C10—H10ACg2ii 0.98 2.74 3.655 (2) 155

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

supplementary crystallographic information

Comment

Substituted benzofuran derivatives have drawn much attention due to their valuable pharmacological properties such as antibacterial and antifungal, antitumor and antiviral, and antimicrobial activities (Aslam et al., 2009, Galal et al., 2009, Khan et al., 2005). These benzofuran derivatives occur in a wide range of natural products (Akgul & Anil, 2003; Soekamto et al., 2003). As a part of our ongoing study of benzofuran derivatives containing either 3-(4-fluorophenylsulfinyl) (Choi et al., 2010a) or 3-(4-chlorophenylsufinyl) (Choi et al., 2010b) substituents, we report herein the crystal structure of the title compound.

In the title molecule (Fig. 1), the benzofuran unit is essentially planar, with a mean deviation of 0.019 (1) ° from the least-squares plane defined by the nine constituent atoms. The dihedral angle between the 3-fluorophenyl ring and the mean plane of the benzofuran fragment is 78.38 (4)°. The crystal packing (Fig. 2) is stabilized by weak intermolecular C–H···O and C–H···π interactions (Table 1) as well as by a weak slipped π–π interaction between the furan and benzene rings of adjacent molecules with a Cg1···Cg2iii distance of 3.628 (2) Å and an interplanar distance of 3.417 (2) Å resulting in a slippage of 1.219 (2) Å (Cg1 and Cg2 are the centroids of the C1/C2/C7/O1/C8 furan ring and the C2-C7 benzene ring, respectively).

Experimental

77% 3-chloroperoxybenzoic acid (291 mg, 1.3 mmol) was added in small portions to a stirred solution of 3-(3-fluorophenylsulfanyl)-2,4,6-trimethyl 1-benzofuran (343 mg, 1.2 mmol) in dichloromethane (40 mL) at 273 K. After being stirred at room temperature for 4h, the mixture was washed with saturated sodium bicarbonate solution and the organic layer was separated, dried over magnesium sulfate, filtered and concentrated at reduced pressure. The residue was purified by column chromatography (hexane-ethyl acetate, 2:1 v/v) to afford the title compound as a colorless solid [yield 76%, m.p. 406-407 K; Rf = 0.55 (hexane-ethyl acetate, 4:1 v/v)]. Single crystals suitable for X-ray diffraction were prepared by slow evaporation of a solution of the title compound in benzene at room temperature.

Refinement

All H atoms were positioned geometrically and included as riding contributions with C–H = 0.95 Å for aryl and 0.98 Å for methyl H atoms. Uiso(H) =1.2Ueq(C) for aryl and 1.5Ueq(C) for methyl H atoms.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound with the atom numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are presented as small spheres of arbitrary radius.

Fig. 2.

Fig. 2.

A view of the C–H···O, C–H···π and π–π interactions (dottedlines) in the crystal structure of the title compound. H atoms non-participating in hydrogen-bonding were omitted for clarity. [Symmetry codes: (i) x + 1 , y, z; (ii) - x + 1, - y + 1, - z + 1; (iii) -x + 1, - y + 2, - z + 1.]

Crystal data

C17H15FO2S Z = 2
Mr = 302.35 F(000) = 316
Triclinic, P1 Dx = 1.411 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 6.8561 (2) Å Cell parameters from 7579 reflections
b = 8.0705 (2) Å θ = 2.7–27.5°
c = 13.9069 (3) Å µ = 0.24 mm1
α = 103.719 (1)° T = 173 K
β = 91.280 (1)° Block, colourless
γ = 106.973 (1)° 0.36 × 0.20 × 0.17 mm
V = 711.50 (3) Å3

Data collection

Bruker SMART APEXII CCD diffractometer 3257 independent reflections
Radiation source: rotating anode 2971 reflections with I > 2σ(I)
graphite multilayer Rint = 0.023
Detector resolution: 10.0 pixels mm-1 θmax = 27.5°, θmin = 1.5°
φ and ω scans h = −8→8
Absorption correction: multi-scan (SADABS; Bruker, 2009) k = −10→10
Tmin = 0.919, Tmax = 0.960 l = −16→18
12726 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035 Hydrogen site location: difference Fourier map
wR(F2) = 0.098 H-atom parameters constrained
S = 1.06 w = 1/[σ2(Fo2) + (0.0509P)2 + 0.2693P] where P = (Fo2 + 2Fc2)/3
3257 reflections (Δ/σ)max = 0.001
193 parameters Δρmax = 0.31 e Å3
0 restraints Δρmin = −0.29 e Å3

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
S1 0.41807 (5) 0.81791 (4) 0.16087 (2) 0.02634 (11)
F1 0.65786 (15) 0.26222 (13) 0.09940 (8) 0.0430 (2)
O1 0.81464 (14) 0.96033 (13) 0.39233 (7) 0.0267 (2)
O2 0.21185 (17) 0.84474 (15) 0.16213 (8) 0.0370 (3)
C1 0.5371 (2) 0.86225 (17) 0.28116 (10) 0.0233 (3)
C2 0.4752 (2) 0.79696 (17) 0.36835 (9) 0.0225 (3)
C3 0.2935 (2) 0.70147 (17) 0.40006 (10) 0.0249 (3)
C4 0.3090 (2) 0.67041 (18) 0.49378 (10) 0.0272 (3)
H4 0.1881 0.6052 0.5167 0.033*
C5 0.4919 (2) 0.72936 (18) 0.55638 (10) 0.0275 (3)
C6 0.6698 (2) 0.82929 (18) 0.52602 (10) 0.0276 (3)
H6 0.7961 0.8739 0.5670 0.033*
C7 0.6540 (2) 0.86042 (17) 0.43328 (10) 0.0240 (3)
C8 0.7386 (2) 0.95919 (17) 0.30056 (10) 0.0250 (3)
C9 0.0898 (2) 0.6369 (2) 0.33833 (12) 0.0338 (3)
H9A 0.0765 0.5220 0.2909 0.051*
H9B 0.0813 0.7251 0.3019 0.051*
H9C −0.0209 0.6216 0.3819 0.051*
C10 0.4951 (2) 0.6840 (2) 0.65539 (11) 0.0337 (3)
H10A 0.5080 0.5635 0.6458 0.051*
H10B 0.3676 0.6880 0.6849 0.051*
H10C 0.6119 0.7710 0.6998 0.051*
C11 0.8879 (2) 1.0612 (2) 0.24364 (12) 0.0327 (3)
H11A 0.8162 1.0663 0.1831 0.049*
H11B 0.9924 1.0016 0.2255 0.049*
H11C 0.9535 1.1832 0.2847 0.049*
C12 0.3746 (2) 0.57927 (18) 0.12654 (9) 0.0239 (3)
C13 0.1800 (2) 0.4675 (2) 0.08789 (11) 0.0309 (3)
H13 0.0697 0.5155 0.0843 0.037*
C14 0.1480 (2) 0.2839 (2) 0.05441 (12) 0.0365 (3)
H14 0.0148 0.2062 0.0282 0.044*
C15 0.3083 (2) 0.2136 (2) 0.05897 (11) 0.0342 (3)
H15 0.2871 0.0883 0.0368 0.041*
C16 0.4994 (2) 0.33028 (19) 0.09652 (10) 0.0291 (3)
C17 0.5392 (2) 0.51277 (18) 0.13067 (10) 0.0257 (3)
H17 0.6733 0.5897 0.1559 0.031*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.03275 (19) 0.02625 (19) 0.02560 (18) 0.01438 (14) 0.00475 (13) 0.01027 (13)
F1 0.0476 (5) 0.0378 (5) 0.0512 (6) 0.0265 (4) 0.0033 (4) 0.0091 (4)
O1 0.0243 (5) 0.0270 (5) 0.0291 (5) 0.0065 (4) 0.0055 (4) 0.0090 (4)
O2 0.0390 (6) 0.0406 (6) 0.0410 (6) 0.0246 (5) 0.0023 (5) 0.0131 (5)
C1 0.0275 (6) 0.0211 (6) 0.0243 (6) 0.0105 (5) 0.0065 (5) 0.0072 (5)
C2 0.0275 (6) 0.0191 (6) 0.0230 (6) 0.0103 (5) 0.0058 (5) 0.0053 (5)
C3 0.0268 (6) 0.0205 (6) 0.0282 (6) 0.0084 (5) 0.0064 (5) 0.0059 (5)
C4 0.0308 (7) 0.0228 (6) 0.0296 (7) 0.0083 (5) 0.0102 (5) 0.0087 (5)
C5 0.0380 (7) 0.0230 (6) 0.0245 (6) 0.0132 (6) 0.0081 (5) 0.0065 (5)
C6 0.0309 (7) 0.0260 (7) 0.0256 (6) 0.0098 (5) 0.0022 (5) 0.0049 (5)
C7 0.0260 (6) 0.0198 (6) 0.0266 (6) 0.0076 (5) 0.0069 (5) 0.0056 (5)
C8 0.0288 (6) 0.0222 (6) 0.0275 (6) 0.0116 (5) 0.0081 (5) 0.0077 (5)
C9 0.0266 (7) 0.0377 (8) 0.0364 (8) 0.0053 (6) 0.0041 (6) 0.0140 (6)
C10 0.0457 (8) 0.0340 (8) 0.0269 (7) 0.0167 (6) 0.0083 (6) 0.0119 (6)
C11 0.0302 (7) 0.0338 (8) 0.0402 (8) 0.0117 (6) 0.0134 (6) 0.0179 (6)
C12 0.0294 (6) 0.0253 (6) 0.0199 (6) 0.0108 (5) 0.0045 (5) 0.0082 (5)
C13 0.0278 (7) 0.0373 (8) 0.0286 (7) 0.0108 (6) 0.0026 (5) 0.0096 (6)
C14 0.0326 (7) 0.0347 (8) 0.0353 (8) 0.0009 (6) 0.0028 (6) 0.0075 (6)
C15 0.0463 (9) 0.0246 (7) 0.0302 (7) 0.0073 (6) 0.0076 (6) 0.0081 (6)
C16 0.0370 (7) 0.0313 (7) 0.0257 (6) 0.0176 (6) 0.0061 (5) 0.0105 (6)
C17 0.0280 (6) 0.0276 (7) 0.0230 (6) 0.0103 (5) 0.0025 (5) 0.0072 (5)

Geometric parameters (Å, °)

S1—O2 1.4914 (11) C9—H9A 0.9800
S1—C1 1.7542 (14) C9—H9B 0.9800
S1—C12 1.8023 (14) C9—H9C 0.9800
F1—C16 1.3567 (16) C10—H10A 0.9800
O1—C8 1.3648 (16) C10—H10B 0.9800
O1—C7 1.3839 (15) C10—H10C 0.9800
C1—C8 1.3584 (19) C11—H11A 0.9800
C1—C2 1.4573 (17) C11—H11B 0.9800
C2—C7 1.3947 (19) C11—H11C 0.9800
C2—C3 1.4019 (18) C12—C13 1.385 (2)
C3—C4 1.3918 (19) C12—C17 1.3897 (18)
C3—C9 1.5059 (19) C13—C14 1.392 (2)
C4—C5 1.401 (2) C13—H13 0.9500
C4—H4 0.9500 C14—C15 1.383 (2)
C5—C6 1.388 (2) C14—H14 0.9500
C5—C10 1.5075 (18) C15—C16 1.375 (2)
C6—C7 1.3790 (19) C15—H15 0.9500
C6—H6 0.9500 C16—C17 1.377 (2)
C8—C11 1.4851 (18) C17—H17 0.9500
O2—S1—C1 112.14 (6) H9A—C9—H9C 109.5
O2—S1—C12 106.48 (7) H9B—C9—H9C 109.5
C1—S1—C12 97.57 (6) C5—C10—H10A 109.5
C8—O1—C7 106.56 (10) C5—C10—H10B 109.5
C8—C1—C2 107.30 (12) H10A—C10—H10B 109.5
C8—C1—S1 118.53 (10) C5—C10—H10C 109.5
C2—C1—S1 133.60 (10) H10A—C10—H10C 109.5
C7—C2—C3 118.64 (12) H10B—C10—H10C 109.5
C7—C2—C1 104.16 (11) C8—C11—H11A 109.5
C3—C2—C1 137.13 (12) C8—C11—H11B 109.5
C4—C3—C2 116.41 (12) H11A—C11—H11B 109.5
C4—C3—C9 120.70 (12) C8—C11—H11C 109.5
C2—C3—C9 122.88 (12) H11A—C11—H11C 109.5
C3—C4—C5 124.05 (12) H11B—C11—H11C 109.5
C3—C4—H4 118.0 C13—C12—C17 121.50 (13)
C5—C4—H4 118.0 C13—C12—S1 118.67 (10)
C6—C5—C4 119.25 (12) C17—C12—S1 119.56 (10)
C6—C5—C10 120.47 (13) C12—C13—C14 119.16 (13)
C4—C5—C10 120.28 (13) C12—C13—H13 120.4
C7—C6—C5 116.58 (13) C14—C13—H13 120.4
C7—C6—H6 121.7 C15—C14—C13 120.62 (14)
C5—C6—H6 121.7 C15—C14—H14 119.7
C6—C7—O1 124.21 (12) C13—C14—H14 119.7
C6—C7—C2 124.97 (12) C16—C15—C14 118.08 (14)
O1—C7—C2 110.81 (11) C16—C15—H15 121.0
C1—C8—O1 111.15 (11) C14—C15—H15 121.0
C1—C8—C11 133.60 (13) F1—C16—C15 118.27 (13)
O1—C8—C11 115.25 (12) F1—C16—C17 118.10 (13)
C3—C9—H9A 109.5 C15—C16—C17 123.62 (13)
C3—C9—H9B 109.5 C16—C17—C12 117.01 (13)
H9A—C9—H9B 109.5 C16—C17—H17 121.5
C3—C9—H9C 109.5 C12—C17—H17 121.5
O2—S1—C1—C8 −136.09 (11) C1—C2—C7—C6 −179.12 (12)
C12—S1—C1—C8 112.63 (11) C3—C2—C7—O1 −176.35 (11)
O2—S1—C1—C2 53.83 (14) C1—C2—C7—O1 1.16 (14)
C12—S1—C1—C2 −57.46 (13) C2—C1—C8—O1 1.05 (15)
C8—C1—C2—C7 −1.32 (14) S1—C1—C8—O1 −171.44 (8)
S1—C1—C2—C7 169.56 (11) C2—C1—C8—C11 −178.84 (14)
C8—C1—C2—C3 175.47 (15) S1—C1—C8—C11 8.7 (2)
S1—C1—C2—C3 −13.7 (2) C7—O1—C8—C1 −0.33 (14)
C7—C2—C3—C4 −2.87 (18) C7—O1—C8—C11 179.58 (11)
C1—C2—C3—C4 −179.32 (14) O2—S1—C12—C13 13.52 (12)
C7—C2—C3—C9 176.19 (13) C1—S1—C12—C13 129.35 (11)
C1—C2—C3—C9 −0.3 (2) O2—S1—C12—C17 −172.39 (10)
C2—C3—C4—C5 0.5 (2) C1—S1—C12—C17 −56.55 (11)
C9—C3—C4—C5 −178.63 (13) C17—C12—C13—C14 1.4 (2)
C3—C4—C5—C6 1.8 (2) S1—C12—C13—C14 175.37 (11)
C3—C4—C5—C10 −177.97 (12) C12—C13—C14—C15 −0.4 (2)
C4—C5—C6—C7 −1.44 (19) C13—C14—C15—C16 −0.6 (2)
C10—C5—C6—C7 178.32 (12) C14—C15—C16—F1 −178.79 (12)
C5—C6—C7—O1 178.58 (12) C14—C15—C16—C17 0.7 (2)
C5—C6—C7—C2 −1.1 (2) F1—C16—C17—C12 179.73 (11)
C8—O1—C7—C6 179.71 (12) C15—C16—C17—C12 0.3 (2)
C8—O1—C7—C2 −0.57 (14) C13—C12—C17—C16 −1.32 (19)
C3—C2—C7—C6 3.4 (2) S1—C12—C17—C16 −175.24 (10)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C11—H11B···O2i 0.98 2.30 3.2727 (18) 172.
C10—H10A···Cg2ii 0.98 2.74 3.655 (2) 155.

Symmetry codes: (i) x+1, y, z; (ii) −x+1, −y+1, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: MW2033).

References

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  3. Brandenburg, K. (1998). DIAMOND Crystal Impact GbR, Bonn, Germany.
  4. Bruker (2009). APEX2, SADABS and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  5. Choi, H. D., Seo, P. J., Son, B. W. & Lee, U. (2010a). Acta Cryst. E66, o586. [DOI] [PMC free article] [PubMed]
  6. Choi, H. D., Seo, P. J., Son, B. W. & Lee, U. (2010b). Acta Cryst. E66, o2702. [DOI] [PMC free article] [PubMed]
  7. Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
  8. Galal, S. A., Abd El-All, A. S., Abdallah, M. M. & El-Diwani, H. I. (2009). Bioorg. Med. Chem. Lett 19, 2420–2428. [DOI] [PubMed]
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  11. Soekamto, N. H., Achmad, S. A., Ghisalberti, E. L., Hakim, E. H. & Syah, Y. M. (2003). Phytochemistry, 64, 831–834. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811043716/mw2033sup1.cif

e-67-o3113-sup1.cif (24.1KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811043716/mw2033Isup2.hkl

e-67-o3113-Isup2.hkl (159.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811043716/mw2033Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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