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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Oct 5;67(Pt 11):o2826–o2827. doi: 10.1107/S1600536811039717

(1S,2R,3R,8R,10S)-3-Chloro-2,8-dihy­droxy-3,7-dimethyl-11-methyl­idene-13-oxabicyclo­[8.3.0]tridec-6-en-12-one

Mohamed Moumou a, Ahmed Benharref a, Jean-Claude Daran b, Ahmed Elhakmaoui c,*, Mohamed Akssira c, Moha Berraho a
PMCID: PMC3247566  PMID: 22219871

Abstract

The title compound, C15H21ClO4, was synthesized from 9α-hy­droxy­parthenolide (9α-hy­droxy-4,8-dimethyl-12-methylen-3,14-dioxatricyclo­[9.3.0.02,4]tetra­dec-7-en-13-one), which was isolated from the chloro­form extract of the aerial parts of Anvillea radiata. The mol­ecule is built up from fused five- and ten-membered rings. The five-membered lactone ring has an envelope conformation with the flap atom, C(H)-C-C(H), displaced by 0.2325 (15) Å from the mean plane through the remaining four atoms, whereas the ten-membered ring displays an approximate chair–chair conformation. The dihedral angle between the two rings is 66.4 (2)°. In the crystal, mol­ecules are linked into chains propagating along the a axis by O—H⋯O hydrogen bonds.

Related literature

For the isolation and biological activity of 9α-hy­droxy­parthenolide, see: El Hassany et al. (2004). For the reactivity of this sesquiterpene, see: Castaneda-Acosta et al. (1993); Neukirch et al. (2003); Hwang et al. (2006); Neelakantan et al. (2009). For conformational analysis, see: Cremer & Pople (1975)graphic file with name e-67-o2826-scheme1.jpg

Experimental

Crystal data

  • C15H21ClO4

  • M r = 300.77

  • Orthorhombic, Inline graphic

  • a = 8.0224 (2) Å

  • b = 12.1532 (2) Å

  • c = 15.4147 (4) Å

  • V = 1502.90 (6) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.26 mm−1

  • T = 180 K

  • 0.35 × 0.27 × 0.17 mm

Data collection

  • Agilent Xcalibur Eos Gemini ultra diffractometer

  • Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010) T min = 0.889, T max = 1.000

  • 8982 measured reflections

  • 3053 independent reflections

  • 2944 reflections with I > 2σ(I)

  • R int = 0.019

Refinement

  • R[F 2 > 2σ(F 2)] = 0.027

  • wR(F 2) = 0.070

  • S = 1.04

  • 3053 reflections

  • 185 parameters

  • H-atom parameters constrained

  • Δρmax = 0.21 e Å−3

  • Δρmin = −0.21 e Å−3

  • Absolute structure: Flack (1983), 614 Friedel pairs

  • Flack parameter: −0.06 (5)

Data collection: CrysAlis PRO (Agilent, 2010); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: WinGX (Farrugia, 1999).

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811039717/im2319sup1.cif

e-67-o2826-sup1.cif (18.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811039717/im2319Isup2.hkl

e-67-o2826-Isup2.hkl (146.8KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811039717/im2319Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O3—H3⋯O4i 0.82 1.96 2.763 (1) 167
O4—H4⋯O3ii 0.82 2.17 2.980 (1) 171

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

The authors thank the Unit of Support for Technical and Scientific Research (UATRS, CNRST) for financial support.

supplementary crystallographic information

Comment

Our work lies within the framework of the evaluation of medicinal plants and in particular, Anvillea radiata. The main constituent of the chloroform extract of the aerial parts of Anvillea radiata is 9α-hydroxyparthenolide (El Hassany et al., 2004). The reactivity of this sesquiterpene lactone and its derivatives has been the subject of several studies (Castaneda-Acosta et al., 1993; Neukirch et al., 2003; Hwang et al., 2006; Neelakantan et al., 2009), in order to prepare products with a high added value that can be used in the pharmacological industry. In the same context, we have treated 9α-hydroxyparthenolide with 5% of titanium tetrachloride (TiCl4)and obtained (1S, 2R, 3R, 8R, 10S)-3-chloro-2,8- dihydroxy-3,7-dimethyl-11-methylene-13-oxabicyclo[8.3.0]tridec-6-en-12-one with a yield of 52%. The structure of this new product was determined by its single-crystal X-ray structure. The molecule contains two fused rings which exhibit different conformations. The molecular structure of the title compound, Fig.1, shows the lactone ring to adopt an envelope conformation, as indicated by Cremer & Pople (1975) puckering parameters QT = 0.147 (2) Å and φ2 = 58.1 (5)°. The ten-membered ring displays an approximate chair-chair conformation.In the crystal structure, molecules are linked into chains (Fig. 2) running along the a axis by intermolecular O—H···O hydrogen bonds (Table 1). Owing to the presence of Cl atom, the absolute configuration could be fully confirmed, by refining the Flack parameter (Flack, 1983) as C1(S), C2(R), C3(R), C8(R)and C10(S).

Experimental

To a solution of 9α-hydroxyparthenolide (500 mg, 1.89 mmol) in 20 ml dichloromethane are added in small portions and carefully a catalytic amount (5%) of titanium tetrachloride (TiCl4). The reaction mixture was kept at room temperature and stirred for 3 h. Afterwards it was hydrolysed with 20 ml of water and extracted three times with dichloromethane (20 mL). The organic phases are combined, dried over anhydrous Na2SO4 and then evaporated under reduced pressure. The resulting residue is purified by chromatography on silica gel with hexane /ethyl acetate (30/70) as eluent. This allowed us to isolate in pure 291 mg (0,98 mmol, 52%) of (1S, 2R, 3R, 8R, 10S)-3-chloro-2,8-dihydroxy-3,7-dimethyl-11-methylene- 13-oxabicyclo[8.3.0]tridec-6-en-12-one. The title compound was recrystallized from ethyl acetate to produce crystals suitable for X-ray diffraction.

Refinement

All H atoms were fixed geometrically and treated as riding with C—H = 0.96 Å (methyl), 0.97 Å (methylene), 0.98 Å (methine) and O–H = 0.82 Å with Uiso(H) = 1.2Ueq(methylene, methine) or Uiso(H) = 1.5Ueq (methyl, OH).

Figures

Fig. 1.

Fig. 1.

: Molecular structure of the title compound with the atom-labelling scheme. Displacement ellipsoids are drawn at the 30% probability level. H atoms are represented as small spheres of arbitrary radii.

Fig. 2.

Fig. 2.

: Packing view showing the C–H···O hydrogen bonds as dashed lines. H atoms not involved in hydrogen bonding have been omitted for clarity.

Crystal data

C15H21ClO4 F(000) = 640
Mr = 300.77 Dx = 1.329 Mg m3
Orthorhombic, P212121 Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2ab Cell parameters from 8982 reflections
a = 8.0224 (2) Å θ = 3.6–26.4°
b = 12.1532 (2) Å µ = 0.26 mm1
c = 15.4147 (4) Å T = 180 K
V = 1502.90 (6) Å3 Prism, colourless
Z = 4 0.35 × 0.27 × 0.17 mm

Data collection

Agilent Xcalibur Eos Gemini ultra diffractometer 3053 independent reflections
Radiation source: Enhance (Mo) X-ray Source 2944 reflections with I > 2σ(I)
graphite Rint = 0.019
Detector resolution: 16.1978 pixels mm-1 θmax = 26.4°, θmin = 3.6°
ω scans h = −10→9
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010) k = −15→15
Tmin = 0.889, Tmax = 1.000 l = −18→19
8982 measured reflections

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.027 H-atom parameters constrained
wR(F2) = 0.070 w = 1/[σ2(Fo2) + (0.0362P)2 + 0.3492P] where P = (Fo2 + 2Fc2)/3
S = 1.04 (Δ/σ)max = 0.001
3053 reflections Δρmax = 0.21 e Å3
185 parameters Δρmin = −0.21 e Å3
0 restraints Absolute structure: Flack (1983), 614 Friedel pairs
Primary atom site location: structure-invariant direct methods Flack parameter: −0.06 (5)

Special details

Experimental. Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. CrysAlisPro (Agilent, 2010)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cl 0.47204 (6) 0.42068 (3) 0.58743 (3) 0.03475 (11)
C1 0.60869 (16) 0.59828 (11) 0.36912 (9) 0.0169 (3)
H1 0.6725 0.5379 0.3432 0.020*
C2 0.55399 (17) 0.56590 (10) 0.46192 (9) 0.0169 (3)
H2 0.6465 0.5833 0.5011 0.020*
C3 0.51598 (18) 0.44248 (11) 0.47165 (9) 0.0193 (3)
C4 0.66321 (18) 0.36766 (11) 0.44947 (11) 0.0226 (3)
H4A 0.6774 0.3691 0.3870 0.027*
H4B 0.6322 0.2931 0.4651 0.027*
C5 0.83398 (18) 0.39143 (12) 0.49062 (11) 0.0271 (3)
H5A 0.8208 0.3935 0.5532 0.033*
H5B 0.9085 0.3310 0.4770 0.033*
C6 0.91472 (16) 0.49718 (12) 0.46184 (10) 0.0211 (3)
H6 0.9289 0.5519 0.5034 0.025*
C7 0.96724 (17) 0.51863 (11) 0.38212 (10) 0.0201 (3)
C8 1.01946 (18) 0.63373 (12) 0.35599 (10) 0.0213 (3)
H8 1.1106 0.6281 0.3139 0.026*
C9 0.87577 (18) 0.69698 (12) 0.31401 (10) 0.0231 (3)
H9A 0.8484 0.6619 0.2593 0.028*
H9B 0.9135 0.7711 0.3012 0.028*
C10 0.71583 (16) 0.70436 (11) 0.36933 (10) 0.0181 (3)
H10 0.7458 0.7230 0.4292 0.022*
C11 0.59596 (18) 0.78895 (13) 0.33507 (10) 0.0228 (3)
C12 0.44945 (19) 0.73049 (13) 0.29884 (11) 0.0264 (3)
C13 0.6075 (2) 0.89766 (13) 0.33538 (12) 0.0329 (4)
H13A 0.5217 0.9401 0.3123 0.039*
H13B 0.7013 0.9316 0.3587 0.039*
C14 0.9722 (2) 0.43627 (13) 0.30957 (11) 0.0296 (3)
H14A 0.9579 0.3636 0.3327 0.044*
H14B 1.0777 0.4409 0.2804 0.044*
H14C 0.8842 0.4517 0.2692 0.044*
C15 0.36070 (18) 0.40750 (12) 0.42250 (11) 0.0267 (3)
H15A 0.3759 0.4215 0.3617 0.040*
H15B 0.2666 0.4485 0.4433 0.040*
H15C 0.3415 0.3304 0.4314 0.040*
O1 0.33335 (15) 0.76689 (11) 0.25906 (9) 0.0408 (3)
O2 0.46321 (13) 0.62157 (8) 0.31574 (7) 0.0235 (2)
O3 0.41528 (12) 0.63183 (8) 0.48730 (7) 0.0219 (2)
H3 0.4483 0.6844 0.5159 0.033*
O4 1.07598 (12) 0.69787 (8) 0.42835 (8) 0.0261 (2)
H4 1.1646 0.6730 0.4461 0.039*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cl 0.0427 (2) 0.03388 (19) 0.0276 (2) 0.00420 (18) 0.00966 (18) 0.00940 (16)
C1 0.0124 (6) 0.0175 (6) 0.0206 (7) 0.0001 (5) −0.0032 (5) 0.0002 (5)
C2 0.0130 (6) 0.0169 (6) 0.0208 (7) 0.0019 (5) 0.0001 (5) −0.0004 (5)
C3 0.0188 (7) 0.0195 (6) 0.0195 (7) 0.0008 (5) 0.0027 (6) 0.0042 (5)
C4 0.0204 (7) 0.0152 (6) 0.0322 (8) 0.0012 (5) 0.0019 (6) 0.0009 (6)
C5 0.0201 (7) 0.0237 (8) 0.0374 (9) 0.0051 (6) −0.0026 (7) 0.0084 (6)
C6 0.0134 (6) 0.0208 (6) 0.0290 (8) 0.0032 (5) −0.0038 (6) −0.0013 (6)
C7 0.0109 (6) 0.0205 (6) 0.0289 (8) 0.0014 (5) −0.0007 (6) −0.0065 (6)
C8 0.0150 (7) 0.0231 (7) 0.0257 (7) −0.0018 (5) 0.0029 (6) −0.0057 (6)
C9 0.0200 (7) 0.0253 (7) 0.0240 (8) −0.0045 (6) 0.0034 (6) 0.0022 (6)
C10 0.0155 (6) 0.0179 (6) 0.0208 (7) −0.0011 (5) −0.0002 (6) 0.0018 (6)
C11 0.0201 (7) 0.0255 (7) 0.0228 (8) 0.0007 (6) 0.0026 (6) 0.0061 (6)
C12 0.0217 (7) 0.0308 (8) 0.0267 (8) −0.0005 (6) 0.0007 (7) 0.0100 (6)
C13 0.0331 (9) 0.0247 (8) 0.0408 (10) 0.0031 (7) 0.0023 (8) 0.0073 (7)
C14 0.0240 (8) 0.0288 (8) 0.0361 (9) −0.0018 (6) 0.0042 (7) −0.0135 (7)
C15 0.0191 (7) 0.0201 (7) 0.0410 (9) −0.0039 (6) −0.0041 (7) 0.0039 (7)
O1 0.0255 (6) 0.0461 (7) 0.0507 (8) 0.0016 (5) −0.0121 (6) 0.0243 (6)
O2 0.0193 (5) 0.0256 (5) 0.0255 (5) −0.0039 (4) −0.0078 (5) 0.0052 (4)
O3 0.0156 (5) 0.0193 (5) 0.0308 (6) 0.0022 (4) 0.0021 (4) −0.0050 (4)
O4 0.0169 (5) 0.0233 (5) 0.0380 (7) 0.0005 (4) −0.0052 (4) −0.0100 (5)

Geometric parameters (Å, °)

Cl—C3 1.8384 (15) C8—C9 1.529 (2)
C1—O2 1.4557 (16) C8—H8 0.9800
C1—C2 1.5471 (19) C9—C10 1.5433 (19)
C1—C10 1.5495 (18) C9—H9A 0.9700
C1—H1 0.9800 C9—H9B 0.9700
C2—O3 1.4260 (16) C10—C11 1.504 (2)
C2—C3 1.5380 (18) C10—H10 0.9800
C2—H2 0.9800 C11—C13 1.324 (2)
C3—C15 1.519 (2) C11—C12 1.483 (2)
C3—C4 1.5292 (19) C12—O1 1.1997 (19)
C4—C5 1.537 (2) C12—O2 1.3536 (18)
C4—H4A 0.9700 C13—H13A 0.9300
C4—H4B 0.9700 C13—H13B 0.9300
C5—C6 1.506 (2) C14—H14A 0.9600
C5—H5A 0.9700 C14—H14B 0.9600
C5—H5B 0.9700 C14—H14C 0.9600
C6—C7 1.325 (2) C15—H15A 0.9600
C6—H6 0.9300 C15—H15B 0.9600
C7—C14 1.5014 (19) C15—H15C 0.9600
C7—C8 1.5148 (19) O3—H3 0.8200
C8—O4 1.4343 (17) O4—H4 0.8200
O2—C1—C2 110.16 (11) O4—C8—H8 108.5
O2—C1—C10 106.51 (10) C7—C8—H8 108.5
C2—C1—C10 111.53 (11) C9—C8—H8 108.5
O2—C1—H1 109.5 C8—C9—C10 114.96 (12)
C2—C1—H1 109.5 C8—C9—H9A 108.5
C10—C1—H1 109.5 C10—C9—H9A 108.5
O3—C2—C3 111.50 (11) C8—C9—H9B 108.5
O3—C2—C1 109.40 (11) C10—C9—H9B 108.5
C3—C2—C1 113.23 (11) H9A—C9—H9B 107.5
O3—C2—H2 107.5 C11—C10—C9 112.17 (12)
C3—C2—H2 107.5 C11—C10—C1 102.32 (11)
C1—C2—H2 107.5 C9—C10—C1 114.31 (12)
C15—C3—C4 110.83 (12) C11—C10—H10 109.3
C15—C3—C2 112.77 (11) C9—C10—H10 109.3
C4—C3—C2 113.89 (11) C1—C10—H10 109.3
C15—C3—Cl 106.66 (10) C13—C11—C12 122.32 (15)
C4—C3—Cl 106.23 (10) C13—C11—C10 129.51 (15)
C2—C3—Cl 105.86 (9) C12—C11—C10 108.16 (13)
C3—C4—C5 118.97 (12) O1—C12—O2 121.48 (15)
C3—C4—H4A 107.6 O1—C12—C11 129.15 (15)
C5—C4—H4A 107.6 O2—C12—C11 109.36 (13)
C3—C4—H4B 107.6 C11—C13—H13A 120.0
C5—C4—H4B 107.6 C11—C13—H13B 120.0
H4A—C4—H4B 107.0 H13A—C13—H13B 120.0
C6—C5—C4 114.97 (12) C7—C14—H14A 109.5
C6—C5—H5A 108.5 C7—C14—H14B 109.5
C4—C5—H5A 108.5 H14A—C14—H14B 109.5
C6—C5—H5B 108.5 C7—C14—H14C 109.5
C4—C5—H5B 108.5 H14A—C14—H14C 109.5
H5A—C5—H5B 107.5 H14B—C14—H14C 109.5
C7—C6—C5 125.30 (14) C3—C15—H15A 109.5
C7—C6—H6 117.3 C3—C15—H15B 109.5
C5—C6—H6 117.3 H15A—C15—H15B 109.5
C6—C7—C14 124.62 (13) C3—C15—H15C 109.5
C6—C7—C8 121.08 (13) H15A—C15—H15C 109.5
C14—C7—C8 114.22 (12) H15B—C15—H15C 109.5
O4—C8—C7 112.49 (12) C12—O2—C1 111.36 (11)
O4—C8—C9 107.12 (11) C2—O3—H3 109.5
C7—C8—C9 111.61 (12) C8—O4—H4 109.5

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O3—H3···O4i 0.82 1.96 2.763 (1) 167
O4—H4···O3ii 0.82 2.17 2.980 (1) 171

Symmetry codes: (i) x−1/2, −y+3/2, −z+1; (ii) x+1, y, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: IM2319).

References

  1. Agilent (2010). CrysAlis PRO Agilent Technologies, Yarnton, England.
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  3. Cremer, D. & Pople, J. A. (1975). J. Am. Chem. Soc. 97, 1354–1358.
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  5. Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811039717/im2319sup1.cif

e-67-o2826-sup1.cif (18.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811039717/im2319Isup2.hkl

e-67-o2826-Isup2.hkl (146.8KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811039717/im2319Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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