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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Oct 5;67(Pt 11):o2846. doi: 10.1107/S1600536811039973

Ethyl 2-methyl-4-phenyl­pyrido[1,2-a]benzimidazole-3-carboxyl­ate

Yan Qing Ge a, Hai Yan Ge a, Xiao Qun Cao a,*
PMCID: PMC3247584  PMID: 22219889

Abstract

The title compound, C21H18N2O2, was synthesized using a novel tandem annulation reaction between (1H-benzimidazol-2-yl)(phen­yl)methanone and (E)-ethyl 4-bromo­but-2-enoate under mild conditions. The dihedral angles between the mean planes of the five-membered imidazole ring and the pyridine, benzene and phenyl rings are 0.45 (6), 1.69 (1) and 70.96 (8)°, respectively. In the crystal, mol­ecules are linked through inter­molecular C—H⋯N hydrogen bonds.

Related literature

For applications of nitro­gen-containing heterocyclic compounds in the agrochemical and pharmaceutical fields, see: Ge et al. (2009). For the synthesis of the title compound, see: Ge et al. (2011). For the structure of 2,7,8-trimethyl-3-eth­oxy­carbonyl-4- phenyl­pyrido[1,2-a]benzimidazole, see: Ge et al.(2011). Some pyrido[1,2-a]benzimidazole derivatives are of inter­est for their biological activity, such as anti­neoplastic activity and central GABA-A receptor modulators for the treatment of anxiety, see: Badawey & Kappe (1999). graphic file with name e-67-o2846-scheme1.jpg

Experimental

Crystal data

  • C21H18N2O2

  • M r = 330.37

  • Monoclinic, Inline graphic

  • a = 10.1176 (13) Å

  • b = 14.9136 (18) Å

  • c = 12.2648 (15) Å

  • β = 108.487 (2)°

  • V = 1755.1 (4) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.08 mm−1

  • T = 298 K

  • 0.26 × 0.22 × 0.19 mm

Data collection

  • Bruker SMART APEX CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.979, T max = 0.985

  • 8867 measured reflections

  • 3093 independent reflections

  • 2515 reflections with I > 2σ(I)

  • R int = 0.021

Refinement

  • R[F 2 > 2σ(F 2)] = 0.036

  • wR(F 2) = 0.096

  • S = 1.06

  • 3093 reflections

  • 227 parameters

  • H-atom parameters constrained

  • Δρmax = 0.18 e Å−3

  • Δρmin = −0.16 e Å−3

Data collection: SMART (Bruker, 2005); cell refinement: SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP in SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811039973/fj2449sup1.cif

e-67-o2846-sup1.cif (20.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811039973/fj2449Isup2.hkl

e-67-o2846-Isup2.hkl (151.8KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811039973/fj2449Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C17—H17⋯N2i 0.93 2.31 3.2092 (18) 164

Symmetry code: (i) Inline graphic.

Acknowledgments

This study was supported by the Natural Science Foundation of Shandong Province (Y2007C135).

supplementary crystallographic information

Comment

Synthesis of nitrogen-containing heterocyclic compounds has been a subject of great interest due to the wide application in agrochemical and pharmaceutical fields (Ge et al.; 2011). Some pyrido[1,2-a]benzimidazole derivatives have been of interest for their biological activities, such as antineoplastic activity and central GABA-A receptor modulators for the treatment of anxiety (Badawey et al.; 1999). We report here the crystal structure of the title compound, (I) (Fig. 1)

Experimental

To a 50 ml round-bottomed flask were added (1H-benzo[d]imidazol-2-yl)(phenyl)methanone (1.00 mmol), (E)-ethyl 4-bromobut-2-enoate (2.00 mmol), potassium carbonate (0.28 g, 2.05 mmol) and dry DMF (10 ml). The mixture was stirred at room temperature for 6 h. The solvent was removed under reduced pressure and an product was isolated by column chromatography on silica gel (yield 74%). Crystals of (I) suitable for X-ray diffraction were obtained by allowing a refluxed solution of the product in ethyl acetate to cool slowly to room temperature (without temperature control) and allowing the solvent to evaporate for 3 d

Refinement

All H atoms were placed in geometrically calculated positions and refined using a riding model with C—H = 0.97 Å (for CH2 groups) and 0.96 Å (for CH3 groups), their isotropic displacement parameters were set to 1.2 times (1.5 times for CH3 groups) the equivalent displacement parameter of their parent atoms.

Figures

Fig. 1.

Fig. 1.

The molecular structure of (I), showing displacement ellipsoids drawn at the 50% probability level.

Crystal data

C21H18N2O2 F(000) = 696
Mr = 330.37 Dx = 1.250 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 4793 reflections
a = 10.1176 (13) Å θ = 2.2–28.2°
b = 14.9136 (18) Å µ = 0.08 mm1
c = 12.2648 (15) Å T = 298 K
β = 108.487 (2)° BLOCK, yellow
V = 1755.1 (4) Å3 0.26 × 0.22 × 0.19 mm
Z = 4

Data collection

Bruker SMART APEX CCD diffractometer 3093 independent reflections
Radiation source: fine-focus sealed tube 2515 reflections with I > 2σ(I)
graphite Rint = 0.021
φ and ω scans θmax = 25.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −12→12
Tmin = 0.979, Tmax = 0.985 k = −10→17
8867 measured reflections l = −14→14

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.036 H-atom parameters constrained
wR(F2) = 0.096 w = 1/[σ2(Fo2) + (0.0406P)2 + 0.4084P] where P = (Fo2 + 2Fc2)/3
S = 1.06 (Δ/σ)max < 0.001
3093 reflections Δρmax = 0.18 e Å3
227 parameters Δρmin = −0.16 e Å3
0 restraints Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methods Extinction coefficient: 0.0077 (13)

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.10877 (12) 0.07612 (10) 0.79576 (12) 0.0806 (4)
O2 0.26487 (10) −0.01607 (7) 0.91064 (10) 0.0565 (3)
N1 0.57376 (11) 0.22116 (7) 0.87282 (9) 0.0359 (3)
N2 0.60190 (12) 0.26824 (8) 1.05384 (9) 0.0436 (3)
C1 0.68800 (13) 0.27812 (9) 0.90225 (11) 0.0375 (3)
C2 0.70311 (14) 0.30576 (9) 1.01441 (11) 0.0398 (3)
C3 0.81352 (16) 0.36238 (11) 1.07098 (13) 0.0508 (4)
H3 0.8262 0.3817 1.1457 0.061*
C4 0.90241 (16) 0.38855 (11) 1.01303 (14) 0.0545 (4)
H4 0.9767 0.4260 1.0496 0.065*
C5 0.88497 (16) 0.36077 (11) 0.90058 (14) 0.0540 (4)
H5 0.9473 0.3804 0.8640 0.065*
C6 0.77758 (15) 0.30500 (10) 0.84297 (13) 0.0468 (4)
H6 0.7654 0.2862 0.7681 0.056*
C7 0.52624 (13) 0.21772 (9) 0.96751 (11) 0.0365 (3)
C8 0.40891 (14) 0.16270 (9) 0.95981 (11) 0.0385 (3)
C9 0.35444 (14) 0.15819 (10) 1.05942 (12) 0.0406 (3)
C10 0.42867 (17) 0.11386 (11) 1.15914 (13) 0.0511 (4)
H10 0.5136 0.0872 1.1647 0.061*
C11 0.3766 (2) 0.10917 (13) 1.25066 (14) 0.0637 (5)
H11 0.4261 0.0784 1.3170 0.076*
C12 0.2527 (2) 0.14964 (13) 1.24415 (16) 0.0677 (5)
H12 0.2186 0.1466 1.3061 0.081*
C13 0.17917 (19) 0.19447 (12) 1.14640 (17) 0.0634 (5)
H13 0.0956 0.2225 1.1422 0.076*
C14 0.22908 (16) 0.19811 (11) 1.05370 (14) 0.0517 (4)
H14 0.1778 0.2277 0.9869 0.062*
C15 0.34899 (14) 0.11679 (9) 0.85925 (11) 0.0389 (3)
C16 0.39968 (14) 0.12299 (9) 0.76289 (11) 0.0400 (3)
C17 0.51144 (14) 0.17530 (9) 0.77255 (11) 0.0398 (3)
H17 0.5464 0.1803 0.7112 0.048*
C18 0.33086 (17) 0.07371 (12) 0.65248 (12) 0.0548 (4)
H18A 0.3839 0.0823 0.6008 0.082*
H18B 0.2382 0.0965 0.6179 0.082*
H18C 0.3265 0.0109 0.6682 0.082*
C19 0.22564 (15) 0.05809 (10) 0.85009 (12) 0.0443 (3)
C20 0.15708 (18) −0.07492 (11) 0.92566 (16) 0.0598 (4)
H20A 0.1769 −0.1366 0.9109 0.072*
H20B 0.0673 −0.0587 0.8717 0.072*
C21 0.15356 (18) −0.06592 (12) 1.04557 (16) 0.0656 (5)
H21A 0.2437 −0.0800 1.0985 0.098*
H21B 0.0855 −0.1064 1.0572 0.098*
H21C 0.1292 −0.0055 1.0583 0.098*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0426 (7) 0.0950 (10) 0.0882 (9) −0.0126 (6) −0.0019 (6) 0.0330 (8)
O2 0.0439 (6) 0.0466 (6) 0.0797 (8) −0.0035 (5) 0.0206 (5) 0.0096 (6)
N1 0.0368 (6) 0.0431 (6) 0.0287 (5) −0.0039 (5) 0.0119 (5) 0.0010 (5)
N2 0.0455 (7) 0.0532 (7) 0.0345 (6) −0.0091 (6) 0.0160 (5) −0.0049 (5)
C1 0.0355 (7) 0.0412 (7) 0.0352 (7) −0.0016 (6) 0.0105 (6) 0.0041 (6)
C2 0.0404 (7) 0.0438 (8) 0.0347 (7) −0.0027 (6) 0.0111 (6) 0.0021 (6)
C3 0.0526 (9) 0.0554 (9) 0.0407 (8) −0.0105 (7) 0.0093 (7) −0.0024 (7)
C4 0.0449 (8) 0.0561 (10) 0.0555 (10) −0.0134 (7) 0.0062 (7) 0.0057 (7)
C5 0.0443 (8) 0.0637 (10) 0.0559 (10) −0.0092 (7) 0.0187 (7) 0.0121 (8)
C6 0.0468 (8) 0.0558 (9) 0.0408 (8) −0.0046 (7) 0.0182 (7) 0.0061 (7)
C7 0.0375 (7) 0.0438 (8) 0.0295 (6) −0.0014 (6) 0.0125 (5) 0.0014 (6)
C8 0.0372 (7) 0.0455 (8) 0.0336 (7) −0.0006 (6) 0.0126 (6) 0.0031 (6)
C9 0.0414 (8) 0.0452 (8) 0.0386 (7) −0.0096 (6) 0.0176 (6) −0.0036 (6)
C10 0.0502 (9) 0.0640 (10) 0.0421 (8) −0.0040 (8) 0.0187 (7) 0.0028 (7)
C11 0.0735 (12) 0.0798 (12) 0.0428 (9) −0.0143 (10) 0.0257 (8) 0.0046 (8)
C12 0.0809 (13) 0.0801 (13) 0.0603 (11) −0.0246 (11) 0.0483 (10) −0.0144 (10)
C13 0.0583 (10) 0.0676 (11) 0.0788 (13) −0.0100 (9) 0.0425 (10) −0.0138 (10)
C14 0.0472 (8) 0.0547 (9) 0.0572 (9) −0.0036 (7) 0.0224 (7) −0.0012 (7)
C15 0.0365 (7) 0.0430 (8) 0.0362 (7) −0.0008 (6) 0.0100 (6) 0.0037 (6)
C16 0.0421 (8) 0.0440 (8) 0.0320 (7) −0.0008 (6) 0.0090 (6) 0.0008 (6)
C17 0.0445 (8) 0.0480 (8) 0.0278 (7) −0.0012 (6) 0.0129 (6) 0.0000 (6)
C18 0.0591 (10) 0.0625 (10) 0.0397 (8) −0.0102 (8) 0.0113 (7) −0.0080 (7)
C19 0.0394 (8) 0.0531 (9) 0.0398 (7) −0.0045 (7) 0.0115 (6) −0.0019 (7)
C20 0.0554 (10) 0.0456 (9) 0.0834 (12) −0.0115 (7) 0.0291 (9) 0.0012 (8)
C21 0.0583 (10) 0.0596 (11) 0.0838 (13) 0.0024 (8) 0.0294 (10) 0.0088 (9)

Geometric parameters (Å, °)

O1—C19 1.1894 (18) C10—C11 1.385 (2)
O2—C19 1.3211 (18) C10—H10 0.9300
O2—C20 1.4564 (18) C11—C12 1.371 (3)
N1—C17 1.3733 (16) C11—H11 0.9300
N1—C1 1.3868 (17) C12—C13 1.368 (3)
N1—C7 1.3917 (16) C12—H12 0.9300
N2—C7 1.3270 (17) C13—C14 1.384 (2)
N2—C2 1.3818 (17) C13—H13 0.9300
C1—C6 1.3887 (19) C14—H14 0.9300
C1—C2 1.3973 (19) C15—C16 1.4328 (19)
C2—C3 1.397 (2) C15—C19 1.4992 (19)
C3—C4 1.368 (2) C16—C17 1.3477 (19)
C3—H3 0.9300 C16—C18 1.5036 (19)
C4—C5 1.397 (2) C17—H17 0.9300
C4—H4 0.9300 C18—H18A 0.9600
C5—C6 1.373 (2) C18—H18B 0.9600
C5—H5 0.9300 C18—H18C 0.9600
C6—H6 0.9300 C20—C21 1.488 (3)
C7—C8 1.4214 (19) C20—H20A 0.9700
C8—C15 1.3722 (19) C20—H20B 0.9700
C8—C9 1.4926 (19) C21—H21A 0.9600
C9—C14 1.383 (2) C21—H21B 0.9600
C9—C10 1.384 (2) C21—H21C 0.9600
C19—O2—C20 118.17 (12) C13—C12—H12 120.0
C17—N1—C1 130.26 (11) C11—C12—H12 120.0
C17—N1—C7 123.15 (11) C12—C13—C14 120.04 (16)
C1—N1—C7 106.58 (10) C12—C13—H13 120.0
C7—N2—C2 104.76 (11) C14—C13—H13 120.0
N1—C1—C6 131.99 (13) C9—C14—C13 120.62 (16)
N1—C1—C2 105.00 (11) C9—C14—H14 119.7
C6—C1—C2 122.99 (13) C13—C14—H14 119.7
N2—C2—C3 129.47 (13) C8—C15—C16 122.51 (12)
N2—C2—C1 111.30 (12) C8—C15—C19 118.60 (12)
C3—C2—C1 119.21 (13) C16—C15—C19 118.88 (12)
C4—C3—C2 117.93 (14) C17—C16—C15 118.34 (12)
C4—C3—H3 121.0 C17—C16—C18 119.87 (13)
C2—C3—H3 121.0 C15—C16—C18 121.79 (13)
C3—C4—C5 122.03 (15) C16—C17—N1 120.08 (12)
C3—C4—H4 119.0 C16—C17—H17 120.0
C5—C4—H4 119.0 N1—C17—H17 120.0
C6—C5—C4 121.30 (14) C16—C18—H18A 109.5
C6—C5—H5 119.4 C16—C18—H18B 109.5
C4—C5—H5 119.4 H18A—C18—H18B 109.5
C5—C6—C1 116.54 (14) C16—C18—H18C 109.5
C5—C6—H6 121.7 H18A—C18—H18C 109.5
C1—C6—H6 121.7 H18B—C18—H18C 109.5
N2—C7—N1 112.36 (11) O1—C19—O2 124.91 (14)
N2—C7—C8 129.73 (12) O1—C19—C15 124.47 (14)
N1—C7—C8 117.91 (11) O2—C19—C15 110.62 (12)
C15—C8—C7 117.99 (12) O2—C20—C21 108.91 (14)
C15—C8—C9 122.73 (12) O2—C20—H20A 109.9
C7—C8—C9 119.27 (12) C21—C20—H20A 109.9
C14—C9—C10 118.86 (14) O2—C20—H20B 109.9
C14—C9—C8 120.66 (13) C21—C20—H20B 109.9
C10—C9—C8 120.48 (13) H20A—C20—H20B 108.3
C9—C10—C11 120.09 (16) C20—C21—H21A 109.5
C9—C10—H10 120.0 C20—C21—H21B 109.5
C11—C10—H10 120.0 H21A—C21—H21B 109.5
C12—C11—C10 120.43 (17) C20—C21—H21C 109.5
C12—C11—H11 119.8 H21A—C21—H21C 109.5
C10—C11—H11 119.8 H21B—C21—H21C 109.5
C13—C12—C11 119.93 (15)
C17—N1—C1—C6 −2.2 (2) C15—C8—C9—C10 109.59 (17)
C7—N1—C1—C6 178.59 (15) C7—C8—C9—C10 −71.49 (18)
C17—N1—C1—C2 179.46 (13) C14—C9—C10—C11 0.7 (2)
C7—N1—C1—C2 0.20 (14) C8—C9—C10—C11 −179.29 (14)
C7—N2—C2—C3 −177.76 (15) C9—C10—C11—C12 −1.2 (3)
C7—N2—C2—C1 0.44 (16) C10—C11—C12—C13 0.5 (3)
N1—C1—C2—N2 −0.40 (15) C11—C12—C13—C14 0.7 (3)
C6—C1—C2—N2 −178.98 (13) C10—C9—C14—C13 0.5 (2)
N1—C1—C2—C3 178.00 (13) C8—C9—C14—C13 −179.52 (14)
C6—C1—C2—C3 −0.6 (2) C12—C13—C14—C9 −1.2 (3)
N2—C2—C3—C4 178.25 (15) C7—C8—C15—C16 −0.4 (2)
C1—C2—C3—C4 0.2 (2) C9—C8—C15—C16 178.50 (13)
C2—C3—C4—C5 0.3 (2) C7—C8—C15—C19 179.67 (12)
C3—C4—C5—C6 −0.5 (3) C9—C8—C15—C19 −1.4 (2)
C4—C5—C6—C1 0.1 (2) C8—C15—C16—C17 0.7 (2)
N1—C1—C6—C5 −177.72 (14) C19—C15—C16—C17 −179.38 (13)
C2—C1—C6—C5 0.4 (2) C8—C15—C16—C18 −178.70 (14)
C2—N2—C7—N1 −0.31 (15) C19—C15—C16—C18 1.2 (2)
C2—N2—C7—C8 179.29 (14) C15—C16—C17—N1 −0.1 (2)
C17—N1—C7—N2 −179.25 (12) C18—C16—C17—N1 179.34 (13)
C1—N1—C7—N2 0.07 (15) C1—N1—C17—C16 −179.97 (13)
C17—N1—C7—C8 1.10 (19) C7—N1—C17—C16 −0.8 (2)
C1—N1—C7—C8 −179.58 (12) C20—O2—C19—O1 −8.9 (2)
N2—C7—C8—C15 179.97 (14) C20—O2—C19—C15 171.09 (13)
N1—C7—C8—C15 −0.45 (19) C8—C15—C19—O1 105.81 (18)
N2—C7—C8—C9 1.0 (2) C16—C15—C19—O1 −74.1 (2)
N1—C7—C8—C9 −179.42 (12) C8—C15—C19—O2 −74.15 (16)
C15—C8—C9—C14 −70.36 (19) C16—C15—C19—O2 105.95 (15)
C7—C8—C9—C14 108.56 (16) C19—O2—C20—C21 −106.00 (16)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C17—H17···N2i 0.93 2.31 3.2092 (18) 164

Symmetry codes: (i) x, −y+1/2, z−1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: FJ2449).

References

  1. Badawey, E. S. A. M. & Kappe, T. (1999). Eur. J. Med. Chem. 34, 663–667. [DOI] [PubMed]
  2. Bruker (2005). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Ge, Y. Q., Jia, J., Li, Y., Yin, L. & Wang, J. W. (2009). Heterocycles, 42, 197–206.
  4. Ge, Y. Q., jia, J., Yang, H., Tao, X. T. & Wang, J. W. (2011). Dyes Pigments, 88, 344-349.
  5. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  6. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811039973/fj2449sup1.cif

e-67-o2846-sup1.cif (20.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811039973/fj2449Isup2.hkl

e-67-o2846-Isup2.hkl (151.8KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811039973/fj2449Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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