Figure 4.

The difference in assignment accuracy (MIAP) based on SNPs and haplotypes as a function of GIA, LD ($\stackrel{-}{\left|D\right|}$ and ${\stackrel{-}{r}}^2$), and the difference between F_ST for haplotype loci and F_ST for SNPs (values are given in Table 2). A linear regression line is included for each comparison. (A) GIA, ρ = 0.748, y = 4.1x + 0.046 (P = 4 × 10⁻⁵); (B) $\stackrel{-}{\left|D\right|}$, ρ = −0.302, y = −0.75x + 0.14 (P = 0.16); (C) ${\stackrel{-}{r}}^2$, ρ = −0.289, y = −0.13x + 0.14 (P = 0.18); (D) F_ST(Haplotypes) − F_ST(SNPs), ρ = 0.790, y = 6.1x + 0.040 (P = 7 × 10⁻⁶).