Abstract
The crystal structure of the title compound, C12H17BrNO+·Cl−, is stabilized by N—H⋯Cl and C—H⋯O hydrogen bonds, forming a three-dimensional network. The interactions framework is completed by C—H⋯π contacts between a methylene group and the benzene ring of a symmetry-related molecule.
Related literature
For details of the pharmacological effects of Mannich bases and for the synthesis, see: Dimmock & Kumar (1997 ▶); Gul, Gul, et al. (2005 ▶); Gul, Sahin et al. (2005 ▶); Gul et al. (2007 ▶); Mete et al. (2011 ▶); Kucukoglu et al. (2011 ▶); Canturk et al. (2008 ▶); Chen et al. (1991 ▶); Suleyman et al. (2007 ▶). For bond-length data, see: Allen et al. (1987 ▶).
Experimental
Crystal data
C12H17BrNO+·Cl−
M r = 306.62
Tetragonal,
a = 19.7122 (4) Å
c = 7.1738 (2) Å
V = 2787.53 (11) Å3
Z = 8
Mo Kα radiation
μ = 3.12 mm−1
T = 294 K
0.15 × 0.13 × 0.11 mm
Data collection
Rigaku R-AXIS RAPID-S diffractometer
Absorption correction: multi-scan (Blessing, 1995 ▶) T min = 0.632, T max = 0.709
50060 measured reflections
2836 independent reflections
1617 reflections with I > 2σ(I)
R int = 0.151
Refinement
R[F 2 > 2σ(F 2)] = 0.076
wR(F 2) = 0.181
S = 1.07
2836 reflections
153 parameters
2 restraints
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.67 e Å−3
Δρmin = −0.81 e Å−3
Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶).
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811052640/bh2400sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811052640/bh2400Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811052640/bh2400Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
Cg1 is the centroid of the benzene ring.
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N1—HN2⋯Cl1 | 0.86 (4) | 2.26 (4) | 3.102 (4) | 166 (5) |
| N1—HN1⋯Cl1i | 0.86 (6) | 2.27 (6) | 3.133 (5) | 177 (9) |
| C12—H12B⋯O1ii | 0.96 | 2.60 | 3.378 (7) | 139 |
| C9—H9B⋯Cg1iii | 0.97 | 3.00 | 3.943 (6) | 164 |
Symmetry codes: (i)
; (ii)
; (iii)
.
Acknowledgments
The authors are indebted to the Department of Chemistry, Atatürk University, Erzurum, Turkey, for use of the X-ray diffractometer purchased under grant No. 2003/219 of the University Research Fund.
supplementary crystallographic information
Comment
Mannich bases are generally formed by the reaction between formaldehyde, a secondary amine and a compound containing reactive hydrogen atoms. On occasion, aldehydes other than formaldehyde may be employed and the secondary amine may be replaced by ammonia and primary amines. This process is known as the Mannich reaction (Dimmock & Kumar, 1997).
Mannich bases display varied biological activities such as antimicrobial (Gul, Sahin, et al., 2005), cytotoxic (Gul, Gul et al., 2005; Gul et al., 2007; Mete et al., 2011; Kucukoglu et al., 2011), anticancer (Dimmock & Kumar, 1997; Chen et al., 1991), anti-inflammatory (Suleyman et al., 2007), and DNA topoisomerase I inhibiting properties (Canturk et al., 2008).
A Mannich base having at least one hydrogen atom at the β position of amine group can undergo a deamination process to generate an α,β-unsaturated ketone moiety.
In the molecule of the tile compound (Fig. 1), the bond lengths are within normal ranges (Allen et al., 1987), as well as bond angles.
In the crystal structure, molecules are linked via intermolecular N—H···Cl and C—H···O hydrogen bonds (Table 1, Fig. 2), forming a three dimensional network. Furthermore, a C—H···π interaction (Table 1) contributes to the stabilization of the crystal packing.
Experimental
A mixture of the appropriate ketone (50 mmol), para-formaldehyde (50 mmol), and iso-propylamine hydrochloride (27 mmol) was heated in an oil bath at 403 K. The reaction vessel was then removed from the oil bath and when the temperature of the mixture dropped to 338 K, ethyl acetate (40–80 ml) was added. The mixture was stirred at room temperature for 24 h. and the resulting precipitates were then collected and the Mannich base (I) was passed through a column of silica gel 60 (70–230 mesh) using methanol as eluent. After evaporation of the solvent, the product was recrystallized from methanol. M.p.: 447–449 K. Yield: 38%. 1H-NMR (CDCl3) δ 1.49 (d, J = 6.8 Hz, 6H, CH(CH3)2), 3.34–3.38 (m, 3H, CH(CH3)2 and 2 x H-2), 3.73 (t, J = 7.3 Hz, 2H, 2 x H-3), 7.50 (d, J = 8.4 Hz, 2H, H-3'/5'), 7.76 (d, 2H, J = 8.4 Hz, H-2'/6'), 9.55 (brs, 2H, NH2+). 13C-NMR (CDCl3) δ 19.4 (CH(CH3)2), 35.3, 40.2, 51.3, 129.4, 129.8, 132.3, 134.7, 195.8 (CO); MS (EI) m/z: 254 (M - CH3)+, 256 (M - CH3 + 2)+, 270.2 (M + H)+, 272.2 (M + H + 2)+. IR (KBr, cm-1): 2462 (NH2+), 1684 (CO). Calcd. for C12H17BrClNO (306.63): C 47.00, H 5.59, N 4.57. Found: C 46.74, H 5.52, N 4.59 (Mete et al., 2011).
Refinement
The H atoms of the NH2 group, HN1 and HN2, were located in a difference map and refined with a distance restraint of N—H = 0.86 (1) Å. Their displacement parameters were calculated as Uiso = 1.2Ueq(N1). The other H atoms were positioned geometrically with C—H = 0.93 (aromatic), 0.96 (methyl), 0.97 (methylene) and 0.98 Å (methine), and constrained to ride on their parent atoms with Uiso(H) = 1.2Ueq(C) or Uiso(H) = 1.5Ueq(methyl C).
Figures
Fig. 1.
The title compound with displacement ellipsoids for non-H atoms shown at the 30% probability level.
Fig. 2.
The packing and hydrogen bonding of the title salt viewed down the c axis. H atoms not involved in hydrogen bonds are omitted for the sake of clarity.
Crystal data
| C12H17BrNO+·Cl− | Dx = 1.461 Mg m−3 |
| Mr = 306.62 | Melting point: 447 K |
| Tetragonal, P42/n | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 4bc | Cell parameters from 3888 reflections |
| a = 19.7122 (4) Å | θ = 2.9–26.4° |
| c = 7.1738 (2) Å | µ = 3.12 mm−1 |
| V = 2787.53 (11) Å3 | T = 294 K |
| Z = 8 | Block, white |
| F(000) = 1248 | 0.15 × 0.13 × 0.11 mm |
Data collection
| Rigaku R-AXIS RAPID-S diffractometer | 2836 independent reflections |
| Radiation source: Sealed Tube | 1617 reflections with I > 2σ(I) |
| Graphite Monochromator | Rint = 0.151 |
| Detector resolution: 10.0000 pixels mm-1 | θmax = 26.4°, θmin = 2.9° |
| dtprofit.ref scans | h = −24→24 |
| Absorption correction: multi-scan (Blessing, 1995) | k = −24→24 |
| Tmin = 0.632, Tmax = 0.709 | l = −8→8 |
| 50060 measured reflections |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.076 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.181 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.07 | w = 1/[σ2(Fo2) + (0.0581P)2 + 4.3122P] where P = (Fo2 + 2Fc2)/3 |
| 2836 reflections | (Δ/σ)max < 0.001 |
| 153 parameters | Δρmax = 0.67 e Å−3 |
| 2 restraints | Δρmin = −0.81 e Å−3 |
| 0 constraints |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Br1 | 0.66757 (4) | 0.19433 (5) | −0.04514 (15) | 0.1156 (4) | |
| O1 | 0.5235 (2) | 0.0463 (2) | 0.7192 (7) | 0.0850 (17) | |
| N1 | 0.6128 (2) | −0.1377 (2) | 0.8767 (7) | 0.0540 (17) | |
| C1 | 0.6340 (3) | 0.0359 (3) | 0.3195 (9) | 0.065 (2) | |
| C2 | 0.6561 (3) | 0.0740 (3) | 0.1698 (10) | 0.073 (3) | |
| C3 | 0.6384 (3) | 0.1411 (3) | 0.1604 (10) | 0.069 (2) | |
| C4 | 0.5995 (3) | 0.1707 (3) | 0.2962 (10) | 0.074 (3) | |
| C5 | 0.5762 (3) | 0.1323 (3) | 0.4438 (9) | 0.067 (2) | |
| C6 | 0.5940 (3) | 0.0644 (3) | 0.4585 (8) | 0.057 (2) | |
| C7 | 0.5686 (3) | 0.0245 (3) | 0.6205 (9) | 0.061 (2) | |
| C8 | 0.5994 (3) | −0.0435 (3) | 0.6592 (8) | 0.063 (2) | |
| C9 | 0.5742 (3) | −0.0744 (3) | 0.8392 (9) | 0.061 (2) | |
| C10 | 0.5984 (3) | −0.1725 (3) | 1.0610 (8) | 0.0583 (19) | |
| C11 | 0.6462 (3) | −0.2324 (3) | 1.0768 (9) | 0.070 (2) | |
| C12 | 0.5251 (3) | −0.1928 (3) | 1.0763 (8) | 0.069 (2) | |
| Cl1 | 0.75617 (8) | −0.07602 (8) | 0.9322 (2) | 0.0682 (6) | |
| H1 | 0.64610 | −0.00960 | 0.32750 | 0.0780* | |
| HN1 | 0.604 (4) | −0.168 (3) | 0.794 (9) | 0.1390* | |
| HN2 | 0.6548 (13) | −0.126 (4) | 0.877 (12) | 0.1390* | |
| H2 | 0.68250 | 0.05440 | 0.07690 | 0.0870* | |
| H4 | 0.58890 | 0.21660 | 0.28900 | 0.0890* | |
| H5 | 0.54840 | 0.15200 | 0.53360 | 0.0800* | |
| H8A | 0.64830 | −0.03880 | 0.66520 | 0.0760* | |
| H8B | 0.58880 | −0.07390 | 0.55690 | 0.0760* | |
| H9A | 0.58050 | −0.04270 | 0.94100 | 0.0730* | |
| H9B | 0.52610 | −0.08460 | 0.82920 | 0.0730* | |
| H10 | 0.60870 | −0.14060 | 1.16200 | 0.0700* | |
| H11A | 0.63550 | −0.26500 | 0.98190 | 0.1050* | |
| H11B | 0.64120 | −0.25290 | 1.19730 | 0.1050* | |
| H11C | 0.69210 | −0.21710 | 1.06120 | 0.1050* | |
| H12A | 0.51320 | −0.22120 | 0.97260 | 0.1030* | |
| H12B | 0.49710 | −0.15300 | 1.07580 | 0.1030* | |
| H12C | 0.51820 | −0.21730 | 1.19040 | 0.1030* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Br1 | 0.0916 (6) | 0.1139 (7) | 0.1414 (9) | 0.0018 (4) | 0.0247 (5) | 0.0597 (6) |
| O1 | 0.091 (3) | 0.074 (3) | 0.090 (3) | 0.020 (2) | 0.021 (3) | 0.008 (3) |
| N1 | 0.055 (3) | 0.049 (3) | 0.058 (3) | 0.002 (2) | −0.001 (2) | 0.007 (2) |
| C1 | 0.061 (4) | 0.055 (4) | 0.080 (4) | 0.009 (3) | −0.003 (3) | 0.007 (3) |
| C2 | 0.067 (4) | 0.067 (4) | 0.084 (5) | 0.003 (3) | 0.006 (3) | 0.011 (4) |
| C3 | 0.049 (3) | 0.070 (4) | 0.087 (5) | −0.006 (3) | −0.004 (3) | 0.023 (4) |
| C4 | 0.075 (4) | 0.056 (4) | 0.090 (5) | 0.002 (3) | −0.008 (4) | 0.013 (4) |
| C5 | 0.072 (4) | 0.051 (3) | 0.077 (4) | 0.005 (3) | −0.003 (3) | 0.000 (3) |
| C6 | 0.062 (4) | 0.050 (3) | 0.060 (4) | −0.002 (3) | −0.010 (3) | 0.004 (3) |
| C7 | 0.056 (4) | 0.060 (4) | 0.068 (4) | 0.000 (3) | −0.004 (3) | −0.001 (3) |
| C8 | 0.064 (4) | 0.061 (4) | 0.065 (4) | 0.006 (3) | 0.001 (3) | 0.009 (3) |
| C9 | 0.060 (4) | 0.053 (3) | 0.070 (4) | 0.003 (3) | −0.003 (3) | 0.005 (3) |
| C10 | 0.068 (4) | 0.056 (3) | 0.051 (3) | −0.003 (3) | −0.004 (3) | 0.005 (3) |
| C11 | 0.070 (4) | 0.072 (4) | 0.067 (4) | 0.009 (3) | −0.008 (3) | 0.013 (3) |
| C12 | 0.067 (4) | 0.075 (4) | 0.064 (4) | −0.004 (3) | 0.008 (3) | 0.006 (3) |
| Cl1 | 0.0608 (9) | 0.0857 (11) | 0.0580 (9) | −0.0135 (7) | 0.0045 (7) | −0.0045 (8) |
Geometric parameters (Å, °)
| Br1—C3 | 1.899 (7) | C10—C11 | 1.515 (8) |
| O1—C7 | 1.215 (7) | C1—H1 | 0.9300 |
| N1—C9 | 1.486 (7) | C2—H2 | 0.9300 |
| N1—C10 | 1.516 (8) | C4—H4 | 0.9300 |
| N1—HN2 | 0.86 (4) | C5—H5 | 0.9300 |
| N1—HN1 | 0.86 (6) | C8—H8A | 0.9700 |
| C1—C2 | 1.381 (9) | C8—H8B | 0.9700 |
| C1—C6 | 1.390 (9) | C9—H9A | 0.9700 |
| C2—C3 | 1.370 (8) | C9—H9B | 0.9700 |
| C3—C4 | 1.370 (9) | C10—H10 | 0.9800 |
| C4—C5 | 1.380 (9) | C11—H11A | 0.9600 |
| C5—C6 | 1.388 (8) | C11—H11B | 0.9600 |
| C6—C7 | 1.490 (9) | C11—H11C | 0.9600 |
| C7—C8 | 1.498 (8) | C12—H12A | 0.9600 |
| C8—C9 | 1.512 (9) | C12—H12B | 0.9600 |
| C10—C12 | 1.503 (8) | C12—H12C | 0.9600 |
| C9—N1—C10 | 116.2 (4) | C5—C4—H4 | 120.00 |
| HN2—N1—HN1 | 113 (8) | C4—C5—H5 | 120.00 |
| C9—N1—HN1 | 111 (5) | C6—C5—H5 | 120.00 |
| C10—N1—HN2 | 107 (6) | C7—C8—H8A | 109.00 |
| C9—N1—HN2 | 106 (5) | C7—C8—H8B | 109.00 |
| C10—N1—HN1 | 105 (4) | C9—C8—H8A | 109.00 |
| C2—C1—C6 | 121.1 (6) | C9—C8—H8B | 109.00 |
| C1—C2—C3 | 118.9 (6) | H8A—C8—H8B | 108.00 |
| Br1—C3—C2 | 119.7 (5) | N1—C9—H9A | 110.00 |
| Br1—C3—C4 | 119.1 (5) | N1—C9—H9B | 110.00 |
| C2—C3—C4 | 121.3 (6) | C8—C9—H9A | 110.00 |
| C3—C4—C5 | 119.9 (6) | C8—C9—H9B | 110.00 |
| C4—C5—C6 | 120.2 (6) | H9A—C9—H9B | 108.00 |
| C5—C6—C7 | 118.9 (5) | N1—C10—H10 | 108.00 |
| C1—C6—C7 | 122.5 (5) | C11—C10—H10 | 108.00 |
| C1—C6—C5 | 118.6 (5) | C12—C10—H10 | 108.00 |
| O1—C7—C6 | 120.9 (5) | C10—C11—H11A | 109.00 |
| C6—C7—C8 | 118.7 (5) | C10—C11—H11B | 109.00 |
| O1—C7—C8 | 120.3 (6) | C10—C11—H11C | 109.00 |
| C7—C8—C9 | 112.7 (5) | H11A—C11—H11B | 110.00 |
| N1—C9—C8 | 109.0 (5) | H11A—C11—H11C | 110.00 |
| N1—C10—C12 | 111.4 (5) | H11B—C11—H11C | 110.00 |
| C11—C10—C12 | 112.6 (5) | C10—C12—H12A | 109.00 |
| N1—C10—C11 | 107.5 (5) | C10—C12—H12B | 110.00 |
| C2—C1—H1 | 119.00 | C10—C12—H12C | 109.00 |
| C6—C1—H1 | 119.00 | H12A—C12—H12B | 109.00 |
| C1—C2—H2 | 121.00 | H12A—C12—H12C | 109.00 |
| C3—C2—H2 | 121.00 | H12B—C12—H12C | 109.00 |
| C3—C4—H4 | 120.00 | ||
| C9—N1—C10—C11 | −176.0 (5) | C3—C4—C5—C6 | 2.3 (9) |
| C9—N1—C10—C12 | 60.1 (6) | C4—C5—C6—C1 | −1.7 (9) |
| C10—N1—C9—C8 | 174.9 (4) | C4—C5—C6—C7 | 179.4 (6) |
| C6—C1—C2—C3 | 0.5 (9) | C5—C6—C7—C8 | −166.9 (5) |
| C2—C1—C6—C5 | 0.3 (9) | C1—C6—C7—O1 | −165.4 (6) |
| C2—C1—C6—C7 | 179.2 (6) | C1—C6—C7—C8 | 14.2 (9) |
| C1—C2—C3—C4 | 0.1 (10) | C5—C6—C7—O1 | 13.5 (9) |
| C1—C2—C3—Br1 | −179.5 (5) | O1—C7—C8—C9 | −6.8 (8) |
| C2—C3—C4—C5 | −1.4 (10) | C6—C7—C8—C9 | 173.6 (5) |
| Br1—C3—C4—C5 | 178.1 (5) | C7—C8—C9—N1 | −173.8 (5) |
Hydrogen-bond geometry (Å, °)
| Cg1 is the centroid of the benzene ring. |
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—HN2···Cl1 | 0.86 (4) | 2.26 (4) | 3.102 (4) | 166 (5) |
| N1—HN1···Cl1i | 0.86 (6) | 2.27 (6) | 3.133 (5) | 177 (9) |
| C12—H12B···O1ii | 0.96 | 2.60 | 3.378 (7) | 139 |
| C9—H9B···Cg1iii | 0.97 | 3.00 | 3.943 (6) | 164 |
Symmetry codes: (i) −y+1/2, x−1, −z+3/2; (ii) −x+1, −y, −z+2; (iii) −x+1, −y, −z+1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BH2400).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811052640/bh2400sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811052640/bh2400Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811052640/bh2400Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


