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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Dec 14;68(Pt 1):o117. doi: 10.1107/S1600536811052895

2,3-Dibromo-6-meth­oxy-4-[(phenethyl­amino)­methyl­idene]cyclo­hexa-2,5-dien-1-one methanol monosolvate

Rong-Bao Ge a, Yue-Hu Chen a, Feng-Ting Wang a, Shuang-Shuang Wang a, Shao-Song Qian a,*
PMCID: PMC3254464  PMID: 22259404

Abstract

In the title compound, C16H15Br2NO2·CH4O, the mean planes of the substituted cyclo­hexa-2,5-dien-1-one and phenyl rings are almost parallel [dihedral angle = 7.84 (4)°]. The crystal packing is stabilized by N—H⋯O hydrogen bonds generating infinite [101] chains. The methanol solvent mol­ecules are connected with the main species by O—H⋯O inter­actions.

Related literature

For background to bromo­phenols and their bioactivity, see: Liu et al. (2011). For related structures, see: Palmer et al. (1973); Li et al. (1995); Huang et al. (2006). For structural and theoretical aspects on the keto-enol equilibrium of salicyl­aldehyde Schiff bases, see: Chatziefthimiou et al. (2006).graphic file with name e-68-0o117-scheme1.jpg

Experimental

Crystal data

  • C16H15Br2NO2·CH4O

  • M r = 445.15

  • Monoclinic, Inline graphic

  • a = 8.752 (6) Å

  • b = 16.308 (10) Å

  • c = 13.001 (8) Å

  • β = 104.047 (6)°

  • V = 1800 (2) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 4.52 mm−1

  • T = 296 K

  • 0.25 × 0.22 × 0.20 mm

Data collection

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2004) T min = 0.337, T max = 0.406

  • 8282 measured reflections

  • 3292 independent reflections

  • 1674 reflections with I > 2σ(I)

  • R int = 0.072

Refinement

  • R[F 2 > 2σ(F 2)] = 0.051

  • wR(F 2) = 0.133

  • S = 1.00

  • 3292 reflections

  • 211 parameters

  • H-atom parameters constrained

  • Δρmax = 0.62 e Å−3

  • Δρmin = −0.60 e Å−3

Data collection: APEX2 (Bruker, 2004); cell refinement: SAINT (Bruker, 2004); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811052895/zq2143sup1.cif

e-68-0o117-sup1.cif (17.3KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811052895/zq2143Isup2.hkl

e-68-0o117-Isup2.hkl (161.5KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811052895/zq2143Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1⋯O1i 0.86 1.93 2.731 (7) 154
O3—H3⋯O1ii 0.82 2.05 2.786 (8) 150

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

This project was sponsored by the ShanDong Province Science & Technology Innovation Foundation (People’s Republic of China).

supplementary crystallographic information

Comment

The 2,3-dibromo-4-hydroxy-5-methoxybenzaldehyde acts as an important precursor for the synthesis of bromophenols, which have been reported to possess a variety of biological activities (Liu et al., 2011). As an extension of our work on the 2,3-dibromo-4-hydroxy-5-methoxybenzaldehyde, the title compound was synthesized by condensing 2,3-dibromo-4-hydroxy-5-methoxybenzaldehyde with phenethylamine, and attempts to investigate its biological activities were carried out.

In the crystal structure of the title compound, C16H15Br2NO2.CH4O, the mean planes of the substituted cyclohexa-2,5-dien-1-one and phenyl rings are almost parallel [dihedral angle = 7.84 (4)°]. Difference Fourier maps clearly showed that the N1 atom is protonated rather than the O1 atom indicating a methylidenecyclohexa-2,5-dien-1-one skeleton (Palmer et al., 1973; Huang et al., 2006; Chatziefthimiou et al., 2006). The N1 and O1 atoms are connected via a short intermolecular N—H···O hydrogen bond [N1···O1i = 2.731 (7) Å; (i) = x - 1/2, -y + 3/2, z - 1/2] generating infinite one-dimensional [101] chains (Chatziefthimiou et al., 2006). The solvent molecules of methanol are connected with the main species by O3—H3···O1ii interactions [O3···O1ii = 2.786 (8) Å; (ii) = x - 1, y, z].

Experimental

2,3-Dibromo-4-hydroxy-5-methoxybenzaldehyde (0.31 g) and phenethylamine (0.12 g) were dissolved in methanol (20 ml). The mixture was stirred at room temperature for 30 min to give a clear solution. Keeping the solution in air for 5 days, yellow block-shaped single crystals suitable for X-ray diffraction analysis were obtained at the bottom of the vessel.

Refinement

All H atoms were placed in geometrical positions and constrained to ride on their parent atoms, with C—H = 0.93 Å and Uiso(H) = 1.2Ueq(C) for aromatic H atoms, with C—H = 0.97 Å and Uiso(H) = 1.2Ueq(C) for methylene H atoms, with C—H = 0.96 Å and Uiso(H) = 1.5Ueq(C) for methyl H atoms, and with N—H = 0.86 Å and Uiso(H) = 1.2Ueq(C) for the amino H atom.

Figures

Fig. 1.

Fig. 1.

Molecular structure of the title compound. Displacement ellipsoids are drawn at the 30% probability level.

Fig. 2.

Fig. 2.

Different views of the crystal packing showing N–H···O and O–H···O hydrogen bonds (dashed lines).

Crystal data

C16H15Br2NO2·CH4O Z = 4
Mr = 445.15 F(000) = 888
Monoclinic, P21/n Dx = 1.643 Mg m3
Hall symbol: -P 2yn Mo Kα radiation, λ = 0.71073 Å
a = 8.752 (6) Å µ = 4.52 mm1
b = 16.308 (10) Å T = 296 K
c = 13.001 (8) Å Block, yellow
β = 104.047 (6)° 0.25 × 0.22 × 0.20 mm
V = 1800 (2) Å3

Data collection

Bruker APEXII CCD diffractometer 3292 independent reflections
Radiation source: fine-focus sealed tube 1674 reflections with I > 2σ(I)
graphite Rint = 0.072
φ and ω scans θmax = 25.5°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2004) h = −10→10
Tmin = 0.337, Tmax = 0.406 k = −19→14
8282 measured reflections l = −12→15

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.051 H-atom parameters constrained
wR(F2) = 0.133 w = 1/[σ2(Fo2) + (0.0388P)2 + 2.4528P] where P = (Fo2 + 2Fc2)/3
S = 1.00 (Δ/σ)max = 0.001
3292 reflections Δρmax = 0.62 e Å3
211 parameters Δρmin = −0.60 e Å3
0 restraints Extinction correction: SHELXL97 (Sheldrick, 2008)
Primary atom site location: structure-invariant direct methods Extinction coefficient: 0.0103 (10)

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Br1 0.50517 (10) 0.54245 (5) 0.37790 (6) 0.0638 (3)
Br2 0.78645 (10) 0.65471 (6) 0.52622 (6) 0.0728 (3)
O1 0.9067 (5) 0.7788 (3) 0.3957 (3) 0.0515 (13)
O2 0.8183 (6) 0.8146 (3) 0.1919 (3) 0.0544 (13)
O3 0.1533 (9) 0.8797 (5) 0.3731 (6) 0.129 (3)
H3 0.1090 0.8384 0.3873 0.193*
N1 0.3484 (6) 0.6175 (3) 0.0466 (4) 0.0429 (15)
H1 0.3848 0.6572 0.0162 0.051*
C1 0.5918 (7) 0.6306 (4) 0.3183 (5) 0.0401 (17)
C2 0.7125 (8) 0.6750 (4) 0.3797 (5) 0.0404 (17)
C3 0.7919 (8) 0.7392 (4) 0.3400 (5) 0.0373 (16)
C4 0.7342 (7) 0.7544 (4) 0.2277 (5) 0.0363 (16)
C5 0.6117 (7) 0.7126 (4) 0.1670 (5) 0.0385 (17)
H5 0.5764 0.7260 0.0956 0.046*
C6 0.5359 (7) 0.6489 (4) 0.2093 (5) 0.0347 (16)
C7 0.4111 (7) 0.6048 (4) 0.1455 (5) 0.0375 (16)
H7 0.3694 0.5623 0.1778 0.045*
C8 0.2192 (8) 0.5689 (5) −0.0177 (5) 0.054 (2)
H8A 0.1369 0.6054 −0.0553 0.065*
H8B 0.1749 0.5342 0.0283 0.065*
C9 0.2756 (8) 0.5160 (5) −0.0969 (6) 0.061 (2)
H9A 0.3238 0.5506 −0.1410 0.074*
H9B 0.3551 0.4781 −0.0591 0.074*
C10 0.1429 (8) 0.4687 (5) −0.1657 (6) 0.0500 (19)
C11 0.0749 (9) 0.4913 (5) −0.2688 (6) 0.061 (2)
H11 0.1126 0.5374 −0.2968 0.074*
C12 −0.0470 (10) 0.4476 (6) −0.3314 (7) 0.080 (3)
H12 −0.0906 0.4644 −0.4007 0.096*
C13 −0.1036 (10) 0.3802 (6) −0.2923 (7) 0.070 (3)
H13 −0.1845 0.3497 −0.3348 0.084*
C14 −0.0414 (9) 0.3580 (5) −0.1913 (7) 0.067 (2)
H14 −0.0813 0.3124 −0.1636 0.080*
C15 0.0808 (8) 0.4018 (5) −0.1279 (6) 0.055 (2)
H15 0.1215 0.3854 −0.0581 0.066*
C17 0.2388 (12) 0.8606 (7) 0.3029 (8) 0.108 (4)
H17A 0.3099 0.9047 0.2992 0.162*
H17B 0.1695 0.8520 0.2342 0.162*
H17C 0.2979 0.8115 0.3254 0.162*
C16 0.7803 (10) 0.8284 (5) 0.0801 (6) 0.075 (3)
H16A 0.7963 0.7788 0.0444 0.112*
H16B 0.8468 0.8708 0.0639 0.112*
H16C 0.6721 0.8449 0.0568 0.112*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Br1 0.0743 (6) 0.0668 (6) 0.0470 (5) −0.0142 (5) 0.0082 (4) 0.0219 (4)
Br2 0.0894 (7) 0.0934 (7) 0.0260 (4) −0.0155 (5) −0.0043 (4) 0.0126 (4)
O1 0.059 (3) 0.059 (3) 0.031 (3) −0.010 (3) 0.001 (2) −0.010 (2)
O2 0.072 (3) 0.058 (3) 0.031 (3) −0.023 (3) 0.008 (3) −0.003 (2)
O3 0.127 (6) 0.181 (8) 0.090 (5) −0.085 (6) 0.049 (5) −0.052 (6)
N1 0.047 (3) 0.048 (4) 0.029 (3) −0.004 (3) 0.001 (3) −0.001 (3)
C1 0.039 (4) 0.047 (4) 0.033 (4) 0.008 (3) 0.008 (3) 0.006 (3)
C2 0.051 (4) 0.046 (4) 0.023 (3) 0.007 (4) 0.006 (3) 0.003 (3)
C3 0.042 (4) 0.041 (4) 0.028 (4) 0.003 (3) 0.007 (3) −0.006 (3)
C4 0.043 (4) 0.038 (4) 0.029 (4) −0.001 (3) 0.012 (3) 0.001 (3)
C5 0.041 (4) 0.048 (4) 0.022 (3) 0.003 (3) −0.001 (3) 0.001 (3)
C6 0.036 (4) 0.038 (4) 0.029 (4) 0.002 (3) 0.006 (3) 0.000 (3)
C7 0.043 (4) 0.040 (4) 0.031 (4) 0.002 (3) 0.011 (3) 0.002 (3)
C8 0.051 (4) 0.067 (5) 0.042 (4) −0.008 (4) 0.009 (4) −0.009 (4)
C9 0.047 (5) 0.081 (6) 0.057 (5) −0.012 (4) 0.014 (4) −0.024 (4)
C10 0.040 (4) 0.057 (5) 0.051 (5) 0.001 (4) 0.007 (4) −0.020 (4)
C11 0.076 (6) 0.060 (5) 0.046 (5) −0.005 (5) 0.012 (5) −0.008 (4)
C12 0.085 (7) 0.089 (7) 0.052 (5) 0.006 (6) −0.008 (5) −0.019 (5)
C13 0.060 (6) 0.070 (6) 0.073 (7) 0.001 (5) 0.004 (5) −0.033 (5)
C14 0.062 (5) 0.062 (6) 0.080 (7) −0.007 (4) 0.022 (5) −0.018 (5)
C15 0.055 (5) 0.060 (5) 0.048 (5) −0.006 (4) 0.010 (4) −0.009 (4)
C17 0.111 (9) 0.129 (9) 0.095 (8) −0.031 (7) 0.048 (7) −0.020 (7)
C16 0.096 (7) 0.081 (6) 0.043 (5) −0.031 (5) 0.010 (5) 0.012 (4)

Geometric parameters (Å, °)

Br1—C1 1.878 (7) C8—H8B 0.9700
Br2—C2 1.886 (6) C9—C10 1.497 (9)
O1—C3 1.263 (7) C9—H9A 0.9700
O2—C4 1.374 (7) C9—H9B 0.9700
O2—C16 1.428 (8) C10—C15 1.363 (10)
O3—C17 1.350 (10) C10—C11 1.377 (9)
O3—H3 0.8200 C11—C12 1.373 (10)
N1—C7 1.286 (7) C11—H11 0.9300
N1—C8 1.465 (8) C12—C13 1.355 (11)
N1—H1 0.8600 C12—H12 0.9300
C1—C2 1.366 (9) C13—C14 1.344 (11)
C1—C6 1.414 (8) C13—H13 0.9300
C2—C3 1.422 (9) C14—C15 1.380 (10)
C3—C4 1.445 (8) C14—H14 0.9300
C4—C5 1.352 (8) C15—H15 0.9300
C5—C6 1.414 (8) C17—H17A 0.9600
C5—H5 0.9300 C17—H17B 0.9600
C6—C7 1.399 (8) C17—H17C 0.9600
C7—H7 0.9300 C16—H16A 0.9600
C8—C9 1.514 (9) C16—H16B 0.9600
C8—H8A 0.9700 C16—H16C 0.9600
C4—O2—C16 116.5 (5) C8—C9—H9A 109.3
C17—O3—H3 109.5 C10—C9—H9B 109.3
C7—N1—C8 124.5 (6) C8—C9—H9B 109.3
C7—N1—H1 117.7 H9A—C9—H9B 108.0
C8—N1—H1 117.7 C15—C10—C11 116.6 (7)
C2—C1—C6 120.3 (6) C15—C10—C9 121.1 (7)
C2—C1—Br1 119.8 (5) C11—C10—C9 122.3 (7)
C6—C1—Br1 119.9 (5) C12—C11—C10 121.9 (8)
C1—C2—C3 123.7 (6) C12—C11—H11 119.0
C1—C2—Br2 121.6 (5) C10—C11—H11 119.0
C3—C2—Br2 114.7 (5) C13—C12—C11 120.0 (8)
O1—C3—C2 124.0 (6) C13—C12—H12 120.0
O1—C3—C4 121.7 (6) C11—C12—H12 120.0
C2—C3—C4 114.3 (6) C14—C13—C12 119.1 (8)
C5—C4—O2 125.2 (6) C14—C13—H13 120.4
C5—C4—C3 122.5 (6) C12—C13—H13 120.4
O2—C4—C3 112.3 (5) C13—C14—C15 121.0 (8)
C4—C5—C6 121.6 (6) C13—C14—H14 119.5
C4—C5—H5 119.2 C15—C14—H14 119.5
C6—C5—H5 119.2 C10—C15—C14 121.2 (7)
C7—C6—C5 121.3 (6) C10—C15—H15 119.4
C7—C6—C1 121.1 (6) C14—C15—H15 119.4
C5—C6—C1 117.6 (6) O3—C17—H17A 109.5
N1—C7—C6 126.3 (6) O3—C17—H17B 109.5
N1—C7—H7 116.9 H17A—C17—H17B 109.5
C6—C7—H7 116.9 O3—C17—H17C 109.5
N1—C8—C9 111.2 (6) H17A—C17—H17C 109.5
N1—C8—H8A 109.4 H17B—C17—H17C 109.5
C9—C8—H8A 109.4 O2—C16—H16A 109.5
N1—C8—H8B 109.4 O2—C16—H16B 109.5
C9—C8—H8B 109.4 H16A—C16—H16B 109.5
H8A—C8—H8B 108.0 O2—C16—H16C 109.5
C10—C9—C8 111.5 (6) H16A—C16—H16C 109.5
C10—C9—H9A 109.3 H16B—C16—H16C 109.5

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N1—H1···O1i 0.86 1.93 2.731 (7) 154.
O3—H3···O1ii 0.82 2.05 2.786 (8) 150.

Symmetry codes: (i) x−1/2, −y+3/2, z−1/2; (ii) x−1, y, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: ZQ2143).

References

  1. Bruker (2004). APEX2, SAINT and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Chatziefthimiou, S. D., Lazarou, Y. G., Hadjoudis, E., Dziembowska, T. & Mavridis, I. M. (2006). J. Phys. Chem. B, 110, 23701. [DOI] [PubMed]
  3. Huang, S.-P., Li, H.-T., Shi, H.-P. & Tan, G.-F. (2006). Acta Cryst. E62, o1541–o1542.
  4. Li, S., Lundquist, K., Soubbotin, N. & Stomberg, R. (1995). Acta Cryst. C51, 2366–2369.
  5. Liu, M., Hansen, P. E. & Lin, X. (2011). Mar. Drugs, 9, 1273–1292. [DOI] [PMC free article] [PubMed]
  6. Palmer, K. J., Wong, R. Y. & Jurd, L. (1973). Acta Cryst. B29, 1509–1514.
  7. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811052895/zq2143sup1.cif

e-68-0o117-sup1.cif (17.3KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811052895/zq2143Isup2.hkl

e-68-0o117-Isup2.hkl (161.5KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811052895/zq2143Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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