Abstract
In the crystal structure of the title compound, C18H13N5·H2O, adjacent molecules are linked by O—H⋯N and N—H⋯O hydrogen bonds, generating a chain propagating along [001].
Related literature
For the use of 2,4,5-tri(4-pyridyl)imidazole in the construction of metal-organic coordination polymers, see: Wang et al. (2009 ▶); Liang et al. (2009 ▶). For related structures, see: Jiang & Hou (2011 ▶); Li (2011 ▶); Li & Xia (2011 ▶). For the preparation, see: Proskurnina et al. (2002 ▶).
Experimental
Crystal data
C18H13N5·H2O
M r = 317.35
Triclinic,
a = 8.1510 (16) Å
b = 9.5210 (19) Å
c = 11.506 (2) Å
α = 103.80 (3)°
β = 105.64 (3)°
γ = 101.03 (3)°
V = 803.3 (4) Å3
Z = 2
Mo Kα radiation
μ = 0.09 mm−1
T = 293 K
0.35 × 0.25 × 0.2 mm
Data collection
Bruker SMART diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 2002 ▶) T min = 0.970, T max = 1.000
7510 measured reflections
2912 independent reflections
1792 reflections with I > 2σ(I)
R int = 0.040
Refinement
R[F 2 > 2σ(F 2)] = 0.058
wR(F 2) = 0.125
S = 1.02
2876 reflections
218 parameters
H-atom parameters constrained
Δρmax = 0.19 e Å−3
Δρmin = −0.17 e Å−3
Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811053013/zj2036sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811053013/zj2036Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811053013/zj2036Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| O1—H1A⋯N5i | 0.85 | 1.99 | 2.843 (3) | 177 |
| N1—H1⋯O1 | 0.89 | 1.85 | 2.741 (3) | 176 |
| O1—H1B⋯N4ii | 0.85 | 1.94 | 2.787 (3) | 172 |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
The authors thank Jiangsu University for supporting this work.
supplementary crystallographic information
Comment
In the 2,4,5-tri(4-pyridyl)imidazole three pyridyl groups (pyridyl ring B (C4-C8 and N3), C (C9-C13 and N4), D (C14-C18 and N5)) are directly connected with the imidazole ring A (C1-C3 , N1 and N2). The dihedral angles between the mean planes of pyridyl ring B and imidazole ring A, pyridyl ring C and imidazole ring A, and pyridyl ring D and imidazole ring A are 9.1 (7) °, 21.5 (5) °, 45.5 (1) °, respectively.
We report herein on the crystal structure of the title compound (Fig. 1). In the crystal lattice the molecules are linked by O—H···N and N—H···O hydrogen bonds (Jiang et al. 2011; Li et al. 2011; Li 2011) interactions to generate a one-dimensional double chain structure (Fig. 2).
Experimental
The 2,4,5-tri(4-pyridyl)imidazole was prepared by the methord reported in the literature (Proskurnina et al. 2002). A mixture of 2,4,5-tri(4-pyridyl)imidazole (0.030 g, 0.1 mmol), 2 drops of 1 mol/L HCl and water (10 mL) was placed in a 25 mL Teflon-lined autoclave and heated for 3 d at 433 K under autogenous pressure. Upon cooling and opening the bomb, colourless block-shaped crystals were obtained, then washed with water and dried in air.
Refinement
All H atoms on C atoms were positioned geometrically and refined as riding atoms, with (C—H = 0.93 Å) and refined as riding, with Uiso(H)= 1.2 Ueq(C). The hydrogen atoms of water molecules were located in a difference Fourier map, and were refined with suitable O—H distance restraint; Uiso = 1.5 Ueq(O).
Figures
Fig. 1.
The molecular structure of the title compound with the atom numbering scheme. Displacement ellipsoids are drawn at the 30% probability level. All H atoms are presented as a small spheres of arbitrary radius.
Fig. 2.
The one-dimensional superamolecular structure linked by the hydrogen bonds.
Crystal data
| C18H13N5·H2O | Z = 2 |
| Mr = 317.35 | F(000) = 332 |
| Triclinic, P1 | Dx = 1.312 Mg m−3 |
| Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
| a = 8.1510 (16) Å | Cell parameters from 3107 reflections |
| b = 9.5210 (19) Å | θ = 3.0–25.2° |
| c = 11.506 (2) Å | µ = 0.09 mm−1 |
| α = 103.80 (3)° | T = 293 K |
| β = 105.64 (3)° | Prism, colourless |
| γ = 101.03 (3)° | 0.35 × 0.25 × 0.2 mm |
| V = 803.3 (4) Å3 |
Data collection
| Bruker SMART diffractometer | 2912 independent reflections |
| Radiation source: fine-focus sealed tube | 1792 reflections with I > 2σ(I) |
| graphite | Rint = 0.040 |
| ω scans | θmax = 25.2°, θmin = 3.0° |
| Absorption correction: multi-scan (SADABS; Bruker, 2002) | h = −9→9 |
| Tmin = 0.970, Tmax = 1.000 | k = −11→11 |
| 7510 measured reflections | l = −13→13 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.058 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.125 | H-atom parameters constrained |
| S = 1.02 | w = 1/[σ2(Fo2) + (0.0171P)2 + 0.605P] where P = (Fo2 + 2Fc2)/3 |
| 2876 reflections | (Δ/σ)max < 0.001 |
| 218 parameters | Δρmax = 0.19 e Å−3 |
| 0 restraints | Δρmin = −0.17 e Å−3 |
Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| N1 | 0.2548 (3) | 0.5006 (2) | 0.26415 (19) | 0.0544 (6) | |
| H1 | 0.2800 | 0.5437 | 0.3469 | 0.082* | |
| N2 | 0.1414 (3) | 0.3416 (2) | 0.06806 (19) | 0.0542 (6) | |
| N3 | −0.0531 (4) | 0.0012 (3) | 0.3185 (2) | 0.0738 (7) | |
| N4 | 0.2559 (4) | 0.5283 (3) | −0.2901 (2) | 0.0749 (7) | |
| N5 | 0.5288 (4) | 1.0560 (3) | 0.3379 (3) | 0.0764 (8) | |
| C1 | 0.1603 (3) | 0.3582 (3) | 0.1895 (2) | 0.0518 (6) | |
| C2 | 0.2265 (3) | 0.4798 (3) | 0.0649 (2) | 0.0523 (6) | |
| C3 | 0.2960 (3) | 0.5811 (3) | 0.1858 (2) | 0.0530 (7) | |
| C4 | 0.0870 (3) | 0.2404 (3) | 0.2365 (2) | 0.0520 (6) | |
| C5 | 0.1271 (4) | 0.2521 (3) | 0.3637 (3) | 0.0671 (8) | |
| H5A | 0.2026 | 0.3399 | 0.4252 | 0.080* | |
| C6 | 0.0536 (4) | 0.1317 (3) | 0.3987 (3) | 0.0739 (9) | |
| H6A | 0.0812 | 0.1433 | 0.4849 | 0.089* | |
| C7 | −0.0932 (4) | −0.0074 (3) | 0.1966 (3) | 0.0754 (9) | |
| H7A | −0.1703 | −0.0962 | 0.1374 | 0.091* | |
| C8 | −0.0284 (4) | 0.1062 (3) | 0.1517 (3) | 0.0668 (8) | |
| H8A | −0.0621 | 0.0926 | 0.0650 | 0.080* | |
| C9 | 0.2386 (3) | 0.4986 (3) | −0.0558 (2) | 0.0527 (6) | |
| C10 | 0.1214 (4) | 0.4006 (3) | −0.1700 (2) | 0.0594 (7) | |
| H10A | 0.0342 | 0.3211 | −0.1709 | 0.071* | |
| C11 | 0.1334 (4) | 0.4203 (3) | −0.2821 (3) | 0.0708 (8) | |
| H11A | 0.0505 | 0.3537 | −0.3572 | 0.085* | |
| C12 | 0.3716 (4) | 0.6201 (4) | −0.1801 (3) | 0.0775 (9) | |
| H12A | 0.4600 | 0.6962 | −0.1826 | 0.093* | |
| C13 | 0.3698 (4) | 0.6105 (3) | −0.0626 (3) | 0.0681 (8) | |
| H13A | 0.4552 | 0.6778 | 0.0110 | 0.082* | |
| C14 | 0.3805 (4) | 0.7431 (3) | 0.2368 (2) | 0.0549 (7) | |
| C15 | 0.3141 (4) | 0.8416 (3) | 0.1767 (3) | 0.0675 (8) | |
| H15A | 0.2185 | 0.8049 | 0.1015 | 0.081* | |
| C16 | 0.3925 (4) | 0.9939 (3) | 0.2305 (3) | 0.0754 (9) | |
| H16A | 0.3470 | 1.0577 | 0.1890 | 0.090* | |
| C17 | 0.5915 (4) | 0.9608 (3) | 0.3939 (3) | 0.0735 (9) | |
| H17A | 0.6879 | 1.0009 | 0.4685 | 0.088* | |
| C18 | 0.5219 (4) | 0.8055 (3) | 0.3480 (3) | 0.0650 (8) | |
| H18A | 0.5701 | 0.7446 | 0.3918 | 0.078* | |
| O1 | 0.3155 (4) | 0.6367 (2) | 0.51602 (18) | 0.1058 (10) | |
| H1A | 0.3597 | 0.7298 | 0.5581 | 0.159* | |
| H1B | 0.3044 | 0.5992 | 0.5745 | 0.159* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| N1 | 0.0703 (14) | 0.0475 (12) | 0.0430 (12) | 0.0090 (10) | 0.0198 (10) | 0.0139 (9) |
| N2 | 0.0711 (15) | 0.0475 (12) | 0.0439 (12) | 0.0088 (10) | 0.0215 (11) | 0.0167 (9) |
| N3 | 0.0983 (19) | 0.0555 (14) | 0.0683 (17) | 0.0082 (13) | 0.0323 (15) | 0.0249 (13) |
| N4 | 0.102 (2) | 0.0736 (16) | 0.0558 (15) | 0.0144 (15) | 0.0375 (15) | 0.0265 (13) |
| N5 | 0.0884 (19) | 0.0549 (15) | 0.0791 (18) | 0.0055 (14) | 0.0317 (16) | 0.0152 (14) |
| C1 | 0.0689 (17) | 0.0422 (13) | 0.0430 (14) | 0.0118 (12) | 0.0187 (13) | 0.0129 (11) |
| C2 | 0.0652 (16) | 0.0482 (14) | 0.0426 (14) | 0.0091 (12) | 0.0199 (12) | 0.0153 (11) |
| C3 | 0.0660 (17) | 0.0482 (14) | 0.0446 (14) | 0.0091 (12) | 0.0201 (13) | 0.0171 (11) |
| C4 | 0.0680 (17) | 0.0428 (13) | 0.0470 (15) | 0.0122 (12) | 0.0209 (13) | 0.0174 (11) |
| C5 | 0.097 (2) | 0.0510 (15) | 0.0484 (16) | 0.0064 (15) | 0.0245 (15) | 0.0162 (13) |
| C6 | 0.111 (3) | 0.0599 (18) | 0.0564 (18) | 0.0163 (17) | 0.0360 (18) | 0.0236 (15) |
| C7 | 0.094 (2) | 0.0519 (17) | 0.068 (2) | −0.0007 (15) | 0.0184 (17) | 0.0212 (15) |
| C8 | 0.088 (2) | 0.0522 (16) | 0.0527 (16) | 0.0074 (15) | 0.0191 (15) | 0.0174 (13) |
| C9 | 0.0659 (17) | 0.0511 (14) | 0.0462 (14) | 0.0145 (12) | 0.0225 (13) | 0.0204 (12) |
| C10 | 0.0738 (18) | 0.0566 (16) | 0.0473 (15) | 0.0113 (14) | 0.0228 (14) | 0.0169 (13) |
| C11 | 0.090 (2) | 0.0732 (19) | 0.0474 (17) | 0.0160 (17) | 0.0259 (16) | 0.0173 (14) |
| C12 | 0.097 (2) | 0.071 (2) | 0.068 (2) | 0.0054 (17) | 0.0402 (19) | 0.0273 (17) |
| C13 | 0.079 (2) | 0.0656 (18) | 0.0517 (17) | 0.0000 (15) | 0.0251 (15) | 0.0158 (14) |
| C14 | 0.0670 (17) | 0.0486 (14) | 0.0492 (15) | 0.0082 (12) | 0.0251 (13) | 0.0148 (12) |
| C15 | 0.078 (2) | 0.0519 (16) | 0.0657 (19) | 0.0083 (14) | 0.0172 (16) | 0.0212 (14) |
| C16 | 0.087 (2) | 0.0536 (17) | 0.086 (2) | 0.0151 (16) | 0.0285 (19) | 0.0265 (16) |
| C17 | 0.080 (2) | 0.0604 (18) | 0.0624 (19) | −0.0019 (16) | 0.0216 (16) | 0.0061 (15) |
| C18 | 0.077 (2) | 0.0548 (16) | 0.0552 (17) | 0.0068 (14) | 0.0185 (15) | 0.0156 (13) |
| O1 | 0.187 (3) | 0.0597 (13) | 0.0500 (12) | −0.0125 (14) | 0.0451 (14) | 0.0087 (10) |
Geometric parameters (Å, °)
| N1—C1 | 1.363 (3) | C7—H7A | 0.9300 |
| N1—C3 | 1.381 (3) | C8—H8A | 0.9300 |
| N1—H1 | 0.8907 | C9—C10 | 1.381 (3) |
| N2—C1 | 1.331 (3) | C9—C13 | 1.390 (3) |
| N2—C2 | 1.379 (3) | C10—C11 | 1.373 (4) |
| N3—C6 | 1.326 (4) | C10—H10A | 0.9300 |
| N3—C7 | 1.329 (4) | C11—H11A | 0.9300 |
| N4—C11 | 1.329 (4) | C12—C13 | 1.381 (4) |
| N4—C12 | 1.330 (4) | C12—H12A | 0.9300 |
| N5—C16 | 1.330 (4) | C13—H13A | 0.9300 |
| N5—C17 | 1.333 (4) | C14—C18 | 1.378 (4) |
| C1—C4 | 1.454 (3) | C14—C15 | 1.397 (4) |
| C2—C3 | 1.383 (3) | C15—C16 | 1.378 (4) |
| C2—C9 | 1.469 (3) | C15—H15A | 0.9300 |
| C3—C14 | 1.463 (3) | C16—H16A | 0.9300 |
| C4—C5 | 1.383 (3) | C17—C18 | 1.390 (4) |
| C4—C8 | 1.385 (3) | C17—H17A | 0.9300 |
| C5—C6 | 1.387 (4) | C18—H18A | 0.9300 |
| C5—H5A | 0.9300 | O1—H1A | 0.8543 |
| C6—H6A | 0.9300 | O1—H1B | 0.8500 |
| C7—C8 | 1.382 (4) | ||
| C1—N1—C3 | 107.5 (2) | C10—C9—C13 | 116.4 (2) |
| C1—N1—H1 | 130.1 | C10—C9—C2 | 120.8 (2) |
| C3—N1—H1 | 122.1 | C13—C9—C2 | 122.8 (2) |
| C1—N2—C2 | 105.6 (2) | C11—C10—C9 | 120.2 (3) |
| C6—N3—C7 | 115.0 (2) | C11—C10—H10A | 119.9 |
| C11—N4—C12 | 115.6 (2) | C9—C10—H10A | 119.9 |
| C16—N5—C17 | 116.0 (3) | N4—C11—C10 | 124.1 (3) |
| N2—C1—N1 | 111.3 (2) | N4—C11—H11A | 117.9 |
| N2—C1—C4 | 124.4 (2) | C10—C11—H11A | 117.9 |
| N1—C1—C4 | 124.3 (2) | N4—C12—C13 | 124.6 (3) |
| N2—C2—C3 | 110.2 (2) | N4—C12—H12A | 117.7 |
| N2—C2—C9 | 119.8 (2) | C13—C12—H12A | 117.7 |
| C3—C2—C9 | 130.0 (2) | C12—C13—C9 | 119.1 (3) |
| N1—C3—C2 | 105.3 (2) | C12—C13—H13A | 120.5 |
| N1—C3—C14 | 120.4 (2) | C9—C13—H13A | 120.5 |
| C2—C3—C14 | 134.0 (2) | C18—C14—C15 | 117.3 (2) |
| C5—C4—C8 | 116.3 (2) | C18—C14—C3 | 122.0 (2) |
| C5—C4—C1 | 123.8 (2) | C15—C14—C3 | 120.6 (2) |
| C8—C4—C1 | 119.9 (2) | C16—C15—C14 | 118.9 (3) |
| C4—C5—C6 | 119.4 (3) | C16—C15—H15A | 120.5 |
| C4—C5—H5A | 120.3 | C14—C15—H15A | 120.5 |
| C6—C5—H5A | 120.3 | N5—C16—C15 | 124.5 (3) |
| N3—C6—C5 | 124.9 (3) | N5—C16—H16A | 117.7 |
| N3—C6—H6A | 117.5 | C15—C16—H16A | 117.7 |
| C5—C6—H6A | 117.5 | N5—C17—C18 | 124.1 (3) |
| N3—C7—C8 | 124.6 (3) | N5—C17—H17A | 117.9 |
| N3—C7—H7A | 117.7 | C18—C17—H17A | 117.9 |
| C8—C7—H7A | 117.7 | C14—C18—C17 | 119.1 (3) |
| C7—C8—C4 | 119.7 (3) | C14—C18—H18A | 120.4 |
| C7—C8—H8A | 120.1 | C17—C18—H18A | 120.4 |
| C4—C8—H8A | 120.1 | H1A—O1—H1B | 100.9 |
| C2—N2—C1—N1 | −0.5 (3) | N2—C2—C9—C10 | 21.5 (4) |
| C2—N2—C1—C4 | 178.6 (3) | C3—C2—C9—C10 | −161.6 (3) |
| C3—N1—C1—N2 | 1.3 (3) | N2—C2—C9—C13 | −156.1 (3) |
| C3—N1—C1—C4 | −177.8 (3) | C3—C2—C9—C13 | 20.8 (5) |
| C1—N2—C2—C3 | −0.5 (3) | C13—C9—C10—C11 | −2.7 (4) |
| C1—N2—C2—C9 | 176.9 (2) | C2—C9—C10—C11 | 179.5 (3) |
| C1—N1—C3—C2 | −1.6 (3) | C12—N4—C11—C10 | 0.2 (5) |
| C1—N1—C3—C14 | 173.1 (2) | C9—C10—C11—N4 | 1.6 (5) |
| N2—C2—C3—N1 | 1.3 (3) | C11—N4—C12—C13 | −0.8 (5) |
| C9—C2—C3—N1 | −175.8 (3) | N4—C12—C13—C9 | −0.5 (5) |
| N2—C2—C3—C14 | −172.3 (3) | C10—C9—C13—C12 | 2.2 (4) |
| C9—C2—C3—C14 | 10.6 (5) | C2—C9—C13—C12 | 179.9 (3) |
| N2—C1—C4—C5 | 170.9 (3) | N1—C3—C14—C18 | 45.8 (4) |
| N1—C1—C4—C5 | −10.2 (4) | C2—C3—C14—C18 | −141.4 (3) |
| N2—C1—C4—C8 | −8.3 (4) | N1—C3—C14—C15 | −131.1 (3) |
| N1—C1—C4—C8 | 170.7 (3) | C2—C3—C14—C15 | 41.7 (5) |
| C8—C4—C5—C6 | 0.8 (4) | C18—C14—C15—C16 | 0.2 (4) |
| C1—C4—C5—C6 | −178.4 (3) | C3—C14—C15—C16 | 177.3 (3) |
| C7—N3—C6—C5 | −2.3 (5) | C17—N5—C16—C15 | 0.7 (5) |
| C4—C5—C6—N3 | 1.1 (5) | C14—C15—C16—N5 | −0.3 (5) |
| C6—N3—C7—C8 | 1.7 (5) | C16—N5—C17—C18 | −0.9 (5) |
| N3—C7—C8—C4 | 0.1 (5) | C15—C14—C18—C17 | −0.4 (4) |
| C5—C4—C8—C7 | −1.3 (4) | C3—C14—C18—C17 | −177.4 (3) |
| C1—C4—C8—C7 | 177.9 (3) | N5—C17—C18—C14 | 0.8 (5) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| O1—H1A···N5i | 0.85 | 1.99 | 2.843 (3) | 177. |
| N1—H1···O1 | 0.89 | 1.85 | 2.741 (3) | 176. |
| O1—H1B···N4ii | 0.85 | 1.94 | 2.787 (3) | 172. |
Symmetry codes: (i) −x+1, −y+2, −z+1; (ii) x, y, z+1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: ZJ2036).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811053013/zj2036sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811053013/zj2036Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811053013/zj2036Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


