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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Dec 23;68(Pt 1):o224. doi: 10.1107/S1600536811054298

N-(5-Sulfanyl­idene-4,5-dihydro-1,3,4-thia­diazol-2-yl)acetamide dimethyl sulfoxide disolvate

Sung Kwon Kang a,*, Nam Sook Cho a, Siyoung Jang a
PMCID: PMC3254557  PMID: 22259506

Abstract

In the title compound, C4H5N3OS2·2C2H6OS, the five-membered heterocyclic ring and the N—(C=O)—C plane of the acetamide group are essentially co-planar, with a dihedral angle of 1.25 (3)°. Inter­molecular N—H⋯O hydrogen bonds between the acetamide compound and the dimethyl sulfoxide mol­ecules stabilize the crystal structure. The two dimethyl sulfoxide mol­ecules are each disordered over two positions with occupancy ratios of 0.605 (2):0.395 (2) and 0.8629 (18):0.1371 (18).

Related literature

For the synthesis and biological activity of thia­diazole compounds, see: Hildebrandt et al. (2011); Cho et al. (1993). For the structures of thia­diazole derivatives, see: Zhan et al. (2007, 2009).graphic file with name e-68-0o224-scheme1.jpg

Experimental

Crystal data

  • C4H5N3OS2·2C2H6OS

  • M r = 331.49

  • Triclinic, Inline graphic

  • a = 7.090 (2) Å

  • b = 9.982 (3) Å

  • c = 11.513 (3) Å

  • α = 100.872 (6)°

  • β = 96.827 (4)°

  • γ = 91.359 (4)°

  • V = 793.6 (4) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.60 mm−1

  • T = 296 K

  • 0.28 × 0.18 × 0.13 mm

Data collection

  • Bruker SMART CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2002) T min = 0.894, T max = 0.916

  • 24389 measured reflections

  • 3292 independent reflections

  • 2625 reflections with I > 2σ(I)

  • R int = 0.180

Refinement

  • R[F 2 > 2σ(F 2)] = 0.039

  • wR(F 2) = 0.117

  • S = 1.06

  • 3292 reflections

  • 245 parameters

  • 7 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.22 e Å−3

  • Δρmin = −0.35 e Å−3

Data collection: SMART (Bruker, 2002); cell refinement: SAINT (Bruker, 2002); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811054298/is5026sup1.cif

e-68-0o224-sup1.cif (24.9KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811054298/is5026Isup2.hkl

e-68-0o224-Isup2.hkl (158.2KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811054298/is5026Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N5—H5⋯O16 0.88 (2) 1.91 (2) 2.783 (3) 170 (3)
N7—H7⋯O12 0.86 (2) 1.89 (2) 2.734 (8) 166 (2)

supplementary crystallographic information

Comment

Thiadiazole derivatives have recently attracted attention in synthesis and biological activities (Hildebrandt et al., 2011; Zhan et al., 2009; Zhan et al., 2007). Our interest in thiadiazoles have formed systematic efforts to obtain new biologically active pyrimidines, purines and their analogs (Cho et al., 1993). 5-Amino-2H-1,2,4-thiadiazol-3-one is five-membered ring analog of cytosine. 5-Amino-3H-1,3,4-thiadiazole-2-thione is a sulfur analog of 5-amino-3H-1,3,4-thiadizol-2-one which is an isomer of 5-amino-2H-1,2,4-thiadiazol-3-one. Herein, the crystal structure of acetylation of 5-amino-3H-1,3,4-thiadiazole-2-thione, (I), is reported (Fig. 1).

The 1,3,4-thiadiazol-2-yl five-membered ring is planar, with a mean deviation of 0.008 Å from the corresponding least-squares plane defined by the seven constituent atoms. The bond distance of C3—N4 [1.2952 (23) Å] is shorter than that of N4—C1 [1.3365 (22) Å], which is consistent with double bond character. The dihedral angle between the 5-thioxo-1,3,4-thiadiazol-2-yl heterocyclic ring and the acetamide group is 1.25 (3) °, which is essentially planar. The crystal structure is stabilized by the intermolecular N—H···O hydrogen bonds between the compound and the DMSO molecules (Fig. 2 and Table 1).

Experimental

5-Amino-3H-1,3,4-thiadiazole-2-thione (1.33 g, 0.011 mol) was dissolved in tetrahydrofuran (50 ml). Triethylamine(1.51 g, 0.015 mol) and a methyl benzoyl chloride (0.01 mol) were added to the solution and the mixture was refluxed with stirring for 4 h. Triethylamine hydrochloride was filtered off, the solution was concentrated to one-third of its original volume, and carefully acidified with concentrated hydrochloric acid. The precipitate was collected by filteration and recrystallized from aqueous ethanol to obtain an analytical product. Colorless crystals of (I) were obtained from its DMSO solution by slow evaporation of the solvent at room temperature.

Refinement

Atoms H5 and H7 of the NH groups were located in a difference Fourier map and refined freely. Other H atoms were positioned geometrically and refined using a riding model, with C—H = 0.96 Å, and with Uiso(H) = 1.5Ueq(carrier C) for methyl H atoms. Two DMSO molecules are disordered with occupancy ratio, 0.605 (2):0.395 (2) and 0.8629 (18):0.1371 (18). Distance restraints [C—S = 1.81 (2) Å and S═O = 1.50 (2) Å] were applied for the DMSO molecules in the refinement.

Figures

Fig. 1.

Fig. 1.

Molecular structure of the title compound, showing the atom-numbering scheme and 30% probability ellipsoids. DMSO molecules show only major parts. Intermolecular N—H···O hydrogen bonds are indicated by dashed lines.

Fig. 2.

Fig. 2.

Part of the crystal structure of the title compound, showing molecules linked by intermolecular N—H···O hydrogen bonds (dashed lines).

Crystal data

C4H5N3OS2·2C2H6OS Z = 2
Mr = 331.49 F(000) = 348
Triclinic, P1 Dx = 1.387 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 7.090 (2) Å Cell parameters from 8583 reflections
b = 9.982 (3) Å θ = 2.5–27.9°
c = 11.513 (3) Å µ = 0.60 mm1
α = 100.872 (6)° T = 296 K
β = 96.827 (4)° Block, colourless
γ = 91.359 (4)° 0.28 × 0.18 × 0.13 mm
V = 793.6 (4) Å3

Data collection

Bruker SMART CCD area-detector diffractometer 2625 reflections with I > 2σ(I)
graphite Rint = 0.180
φ and ω scans θmax = 26.5°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2002) h = −8→8
Tmin = 0.894, Tmax = 0.916 k = −12→12
24389 measured reflections l = −14→14
3292 independent reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.117 H atoms treated by a mixture of independent and constrained refinement
S = 1.06 w = 1/[σ2(Fo2) + (0.0538P)2 + 0.016P] where P = (Fo2 + 2Fc2)/3
3292 reflections (Δ/σ)max < 0.001
245 parameters Δρmax = 0.22 e Å3
7 restraints Δρmin = −0.35 e Å3

Special details

Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq Occ. (<1)
C1 0.2794 (2) 0.12725 (17) 0.77693 (18) 0.0551 (4)
S2 0.26666 (7) 0.02071 (4) 0.63771 (4) 0.05621 (17)
C3 0.2555 (2) 0.16373 (16) 0.57197 (17) 0.0504 (4)
N4 0.2592 (2) 0.27936 (14) 0.64572 (16) 0.0618 (4)
N5 0.2732 (2) 0.25591 (15) 0.75980 (16) 0.0604 (4)
H5 0.277 (4) 0.323 (2) 0.822 (2) 0.113 (10)*
S6 0.29892 (10) 0.07416 (6) 0.90641 (5) 0.0767 (2)
N7 0.2429 (2) 0.15853 (15) 0.45173 (15) 0.0566 (4)
H7 0.238 (3) 0.237 (2) 0.432 (2) 0.070 (6)*
C8 0.2374 (3) 0.03883 (18) 0.36972 (18) 0.0577 (5)
C9 0.2250 (3) 0.0526 (2) 0.2426 (2) 0.0721 (6)
H9A 0.2405 0.1472 0.2382 0.108*
H9B 0.103 0.0168 0.2017 0.108*
H9C 0.3234 0.0026 0.2058 0.108*
O10 0.2408 (2) −0.07095 (13) 0.40190 (14) 0.0768 (4)
S11 0.14717 (14) 0.51941 (8) 0.37275 (8) 0.0627 (4) 0.605 (2)
O12 0.2642 (8) 0.3906 (8) 0.3592 (8) 0.0824 (17) 0.605 (2)
C13 0.265 (2) 0.6272 (13) 0.5029 (11) 0.101 (4) 0.605 (2)
H13A 0.2399 0.5925 0.5721 0.151* 0.605 (2)
H13B 0.2205 0.7179 0.5081 0.151* 0.605 (2)
H13C 0.4 0.6296 0.4989 0.151* 0.605 (2)
C14 0.2160 (13) 0.6060 (7) 0.2625 (7) 0.068 (3) 0.605 (2)
H14A 0.1725 0.5532 0.1848 0.102* 0.605 (2)
H14B 0.352 0.6181 0.2719 0.102* 0.605 (2)
H14C 0.1607 0.6936 0.271 0.102* 0.605 (2)
S11A 0.3122 (2) 0.52142 (13) 0.37732 (12) 0.0645 (5) 0.395 (2)
O12A 0.1799 (11) 0.3913 (11) 0.3575 (12) 0.076 (2) 0.395 (2)
C13A 0.231 (3) 0.6329 (17) 0.4958 (14) 0.080 (4) 0.395 (2)
H13D 0.2722 0.6043 0.5693 0.12* 0.395 (2)
H13E 0.0943 0.6316 0.4838 0.12* 0.395 (2)
H13F 0.2811 0.7239 0.499 0.12* 0.395 (2)
C14A 0.220 (3) 0.6115 (17) 0.2720 (14) 0.114 (7) 0.395 (2)
H14D 0.2269 0.5592 0.1938 0.171* 0.395 (2)
H14E 0.2912 0.6967 0.2821 0.171* 0.395 (2)
H14F 0.0893 0.6289 0.2815 0.171* 0.395 (2)
S15 0.30211 (9) 0.63050 (5) 0.96900 (5) 0.0570 (2) 0.8629 (18)
O16 0.2521 (8) 0.4816 (3) 0.9404 (3) 0.0775 (9) 0.8629 (18)
C17 0.0886 (7) 0.7112 (4) 0.9385 (3) 0.0873 (8) 0.8629 (18)
H17A 0.0047 0.6992 0.9957 0.131* 0.8629 (18)
H17B 0.029 0.6716 0.8598 0.131* 0.8629 (18)
H17C 0.1156 0.807 0.9433 0.131* 0.8629 (18)
C18 0.4168 (7) 0.6718 (6) 0.8504 (5) 0.096 (2) 0.8629 (18)
H18A 0.5394 0.6329 0.8514 0.144* 0.8629 (18)
H18B 0.432 0.7692 0.8598 0.144* 0.8629 (18)
H18C 0.341 0.6355 0.7758 0.144* 0.8629 (18)
S15A 0.2077 (7) 0.6133 (4) 0.8695 (4) 0.0785 (16) 0.1371 (18)
O16A 0.235 (6) 0.4742 (18) 0.8952 (17) 0.085 (7) 0.1371 (18)
C17A 0.136 (4) 0.735 (3) 0.9939 (13) 0.084 (9) 0.1371 (18)
H17D 0.0093 0.7106 1.0059 0.126* 0.1371 (18)
H17E 0.141 0.8248 0.9765 0.126* 0.1371 (18)
H17F 0.2215 0.732 1.0647 0.126* 0.1371 (18)
C18A 0.444 (3) 0.679 (2) 0.876 (3) 0.074 (9) 0.1371 (18)
H18D 0.5276 0.6042 0.8642 0.111* 0.1371 (18)
H18E 0.4821 0.7358 0.9524 0.111* 0.1371 (18)
H18F 0.4509 0.7311 0.8146 0.111* 0.1371 (18)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.0548 (10) 0.0387 (8) 0.0736 (12) 0.0039 (7) 0.0097 (8) 0.0141 (8)
S2 0.0670 (3) 0.0319 (2) 0.0721 (3) 0.00558 (19) 0.0085 (2) 0.0157 (2)
C3 0.0503 (9) 0.0337 (8) 0.0705 (12) 0.0047 (7) 0.0102 (8) 0.0162 (7)
N4 0.0803 (11) 0.0341 (7) 0.0735 (11) 0.0070 (7) 0.0120 (8) 0.0148 (7)
N5 0.0752 (10) 0.0376 (8) 0.0700 (11) 0.0056 (7) 0.0123 (8) 0.0125 (7)
S6 0.1065 (5) 0.0548 (3) 0.0725 (4) 0.0054 (3) 0.0090 (3) 0.0227 (3)
N7 0.0644 (9) 0.0363 (7) 0.0729 (11) 0.0053 (6) 0.0091 (7) 0.0196 (7)
C8 0.0561 (10) 0.0457 (9) 0.0719 (12) 0.0033 (8) 0.0072 (9) 0.0132 (8)
C9 0.0815 (14) 0.0619 (12) 0.0734 (14) 0.0056 (10) 0.0078 (11) 0.0155 (10)
O10 0.1132 (12) 0.0372 (7) 0.0806 (10) 0.0058 (7) 0.0118 (9) 0.0129 (6)
S11 0.0750 (8) 0.0494 (5) 0.0673 (6) −0.0013 (4) 0.0127 (4) 0.0184 (4)
O12 0.120 (4) 0.0437 (17) 0.093 (3) 0.019 (3) 0.030 (4) 0.0259 (16)
C13 0.151 (8) 0.073 (6) 0.066 (5) 0.012 (4) −0.019 (4) 0.000 (4)
C14 0.116 (6) 0.040 (3) 0.057 (4) −0.003 (3) 0.007 (3) 0.032 (3)
S11A 0.0768 (12) 0.0559 (8) 0.0666 (8) 0.0172 (6) 0.0152 (6) 0.0216 (6)
O12A 0.115 (6) 0.036 (2) 0.079 (4) 0.008 (4) 0.003 (5) 0.020 (2)
C13A 0.123 (9) 0.061 (7) 0.064 (8) 0.008 (5) 0.031 (7) 0.020 (5)
C14A 0.151 (16) 0.097 (9) 0.089 (10) 0.037 (8) 0.025 (9) −0.004 (7)
S15 0.0831 (4) 0.0407 (3) 0.0477 (4) 0.0060 (2) 0.0121 (3) 0.0067 (2)
O16 0.117 (2) 0.0372 (13) 0.080 (2) 0.0071 (13) 0.026 (2) 0.0065 (14)
C17 0.096 (2) 0.0585 (18) 0.11 0.0158 (16) 0.019 (3) 0.019 (2)
C18 0.126 (4) 0.093 (3) 0.073 (3) −0.013 (3) 0.045 (3) 0.012 (2)
S15A 0.106 (3) 0.056 (2) 0.068 (3) 0.000 (2) −0.002 (2) 0.0071 (18)
O16A 0.159 (16) 0.023 (6) 0.064 (13) −0.004 (7) 0.029 (14) −0.021 (7)
C17A 0.15 (3) 0.077 (14) 0.039 (8) 0.048 (15) 0.054 (13) 0.010 (10)
C18A 0.103 (16) 0.034 (9) 0.067 (15) 0.016 (9) −0.030 (12) −0.013 (8)

Geometric parameters (Å, °)

C1—N5 1.337 (2) S11A—C13A 1.754 (15)
C1—S6 1.666 (2) C13A—H13D 0.96
C1—S2 1.740 (2) C13A—H13E 0.96
S2—C3 1.7367 (17) C13A—H13F 0.96
C3—N4 1.295 (2) C14A—H14D 0.96
C3—N7 1.368 (2) C14A—H14E 0.96
N4—N5 1.370 (2) C14A—H14F 0.96
N5—H5 0.878 (17) S15—O16 1.486 (4)
N7—C8 1.373 (2) S15—C17 1.762 (4)
N7—H7 0.86 (2) S15—C18 1.777 (5)
C8—O10 1.221 (2) C17—H17A 0.96
C8—C9 1.488 (3) C17—H17B 0.96
C9—H9A 0.96 C17—H17C 0.96
C9—H9B 0.96 C18—H18A 0.96
C9—H9C 0.96 C18—H18B 0.96
S11—O12 1.540 (7) C18—H18C 0.96
S11—C14 1.772 (5) S15A—O16A 1.485 (18)
S11—C13 1.777 (12) S15A—C18A 1.772 (19)
C13—H13A 0.96 S15A—C17A 1.822 (14)
C13—H13B 0.96 C17A—H17D 0.96
C13—H13C 0.96 C17A—H17E 0.96
C14—H14A 0.96 C17A—H17F 0.96
C14—H14B 0.96 C18A—H18D 0.96
C14—H14C 0.96 C18A—H18E 0.96
S11A—O12A 1.548 (11) C18A—H18F 0.96
S11A—C14A 1.720 (12)
N5—C1—S6 127.50 (16) S11A—C13A—H13E 109.5
N5—C1—S2 107.67 (15) H13D—C13A—H13E 109.5
S6—C1—S2 124.82 (10) S11A—C13A—H13F 109.5
C3—S2—C1 89.24 (9) H13D—C13A—H13F 109.5
N4—C3—N7 121.00 (16) H13E—C13A—H13F 109.5
N4—C3—S2 115.01 (15) S11A—C14A—H14D 109.5
N7—C3—S2 124.00 (13) S11A—C14A—H14E 109.5
C3—N4—N5 109.17 (14) H14D—C14A—H14E 109.5
C1—N5—N4 118.91 (17) S11A—C14A—H14F 109.5
C1—N5—H5 119 (2) H14D—C14A—H14F 109.5
N4—N5—H5 121.9 (19) H14E—C14A—H14F 109.5
C3—N7—C8 123.36 (16) O16—S15—C17 105.9 (3)
C3—N7—H7 113.9 (15) O16—S15—C18 107.7 (3)
C8—N7—H7 122.7 (15) C17—S15—C18 97.3 (3)
O10—C8—N7 120.52 (19) S15—C17—H17A 109.5
O10—C8—C9 123.44 (18) S15—C17—H17B 109.5
N7—C8—C9 116.04 (17) H17A—C17—H17B 109.5
C8—C9—H9A 109.5 S15—C17—H17C 109.5
C8—C9—H9B 109.5 H17A—C17—H17C 109.5
H9A—C9—H9B 109.5 H17B—C17—H17C 109.5
C8—C9—H9C 109.5 S15—C18—H18A 109.5
H9A—C9—H9C 109.5 S15—C18—H18B 109.5
H9B—C9—H9C 109.5 H18A—C18—H18B 109.5
O12—S11—C14 104.0 (4) S15—C18—H18C 109.5
O12—S11—C13 103.8 (6) H18A—C18—H18C 109.5
C14—S11—C13 99.9 (5) H18B—C18—H18C 109.5
S11—C13—H13A 109.5 O16A—S15A—C18A 102.8 (19)
S11—C13—H13B 109.5 O16A—S15A—C17A 113.6 (12)
H13A—C13—H13B 109.5 C18A—S15A—C17A 98.3 (14)
S11—C13—H13C 109.5 S15A—C17A—H17D 109.5
H13A—C13—H13C 109.5 S15A—C17A—H17E 109.5
H13B—C13—H13C 109.5 H17D—C17A—H17E 109.5
S11—C14—H14A 109.5 S15A—C17A—H17F 109.5
S11—C14—H14B 109.5 H17D—C17A—H17F 109.5
H14A—C14—H14B 109.5 H17E—C17A—H17F 109.5
S11—C14—H14C 109.5 S15A—C18A—H18D 109.5
H14A—C14—H14C 109.5 S15A—C18A—H18E 109.5
H14B—C14—H14C 109.5 H18D—C18A—H18E 109.5
O12A—S11A—C14A 104.9 (8) S15A—C18A—H18F 109.5
O12A—S11A—C13A 104.7 (7) H18D—C18A—H18F 109.5
C14A—S11A—C13A 93.7 (9) H18E—C18A—H18F 109.5
S11A—C13A—H13D 109.5

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N5—H5···O16 0.88 (2) 1.91 (2) 2.783 (3) 170 (3)
N7—H7···O12 0.86 (2) 1.89 (2) 2.734 (8) 166 (2)

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: IS5026).

References

  1. Bruker (2002). SADABS, SAINT and SMART Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Cho, N. S., Kim, G. N. & Parkanyi, C. (1993). J. Heterocycl. Chem. 30, 397–401.
  3. Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
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  5. Hildebrandt, A., Schaarschmidt, D., van As, L., Swarts, J. C. & Lang, H. (2011). Inorg. Chim. Acta, 374, 112–118.
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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811054298/is5026sup1.cif

e-68-0o224-sup1.cif (24.9KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811054298/is5026Isup2.hkl

e-68-0o224-Isup2.hkl (158.2KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811054298/is5026Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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