Abstract
Previous work estimated the ultrasonic backscatter coefficient (BSC) from low-concentration (volume density < 3%) Chinese Hamster Ovary (CHO, 6.7 -μm cell radius) cell pellets. This study extends the work to higher cell concentrations (volume densities: 9.6% to 63%). At low concentration, BSC magnitude is proportional to the cell concentration and BSC frequency dependency is independent of cell concentration. At high cell concentration, BSC magnitude is not proportional to cell concentration and BSC frequency dependency is dependent on cell concentration. This transition occurs when the volume density reaches between 10% and 30%. Under high cell concentration conditions, the BSC magnitude increases slower than proportionally with the number density at low frequencies (ka < 1), as observed by others. However, what is new is that the BSC magnitude can increase either slower or faster than proportionally with number density at high frequencies (ka > 1). The concentric sphere model least squares estimates show a decrease in estimated cell radius with number density, suggesting that the concentric spheres model is becoming less applicable as concentration increases because the estimated cell radius becomes smaller than that measured. The critical volume density, starting from when the model becomes less applicable, is estimated to be between 10% and 30% cell volume density.
INTRODUCTION
Quantitative ultrasound (QUS) utilizes the frequency-dependent information to yield quantitative tissue properties such as scatterer size, shape, number density, and acoustic impedance. As a model-based imaging approach, QUS requires the identification of scattering sites and appropriate models to accurately describe ultrasonic scattering in biological materials.
There have been efforts to understand scattering sites and determine the appropriate scattering models. It has been hypothesized that the cell is the dominating scattering site (Oelze and Zachary, 2006); likewise, the nucleus has been hypothesized (Kolios et al., 2004; Czarnota and Kolios, 2010). Both hypotheses can be modeled with a fluid-filled sphere model where the cell (or the nucleus) is modeled as a homogeneous fluid sphere embedded in the fluid background having acoustic properties that are different from those of the sphere.
There have also been efforts to understand scattering using approaches such as three-dimensional acoustic impedance map (3DZM) (Mamou et al., 2005; Dapore et al., 2011; Pawlicki et al., 2011), single cell scattering (Baddour et al., 2005; Falou et al., 2010), dilute cell solution (Tunis et al., 2005), isolated nuclei (Taggart et al., 2007), dense cell aggregate (Taggart et al., 2007), and numerical simulations (Doyle et al., 2009). Inspired by the physical phantoms, biophantoms likewise have been used as a technique to elucidate scattering phenomena. Physical phantoms have been used to study the applicability of acoustic scattering theories wherein BSC estimates have shown good agreement with theoretical predictions (Anderson et al., 2010; King et al., 2010). Therefore, biophantoms, which are more random (less controlled) than physical phantoms but less random (better controlled) than real tissues, have been fabricated to be used as a tool to test the applicability of scattering theories in biological materials.
Previous work (Teisseire et al., 2010) has been conducted on estimating the BSC from biophantoms containing live Chinese Hamster Ovary (CHO) cells using weakly focused single-element transducers. CHO cells were chosen for biophantoms because of the similar geometry to the concentric sphere structure as well as its convenient laboratory capabilities. BSC estimates from CHO cell pellet biophantoms of relatively low cell concentrations (1.25, 4.97, 19.5 million cells/mL [Mcell/mL]) showed good agreement with the two concentric fluid spheres theory (McNew et al., 2009). A least squares analysis was performed to estimate the cell properties (size of cell and nucleus, speed of sound in cytoplasm and nucleus, density of cytoplasm and nucleus) from the BSC data. The estimated cell properties agreed well with the literature or direct measurements.
The previous work was based on the assumption that the cells are independent scatter sites, a reasonable assumption if the cell concentration is low. As the cell concentration increases, this assumption may become less valid. The cells may interact with each other acoustically when they are close to each other. Multiple scattering could be nonnegligible (Aubry et al., 2008; Doyle et al., 2009; Aubry and Derode, 2011). The geometry, structure or acoustic properties of the cell and its components may have changed. Coherent scattering may also play a role because the positions of cells may not be random any more due to close distances between cells (Hunt et al., 2002). Although the acoustic scattering under the high-concentration condition is complicated, it is meaningful and necessary to study because it more closely matches real tissue. Therefore, this paper extends the cell pellet study from low cell concentrations to high cell concentrations.
This paper summarizes the study of 18 CHO cell pellets of six different number densities (1.25, 4.97, 19.5, 72.3, 224, 473 Mcell/mL), with three separate cell pellet samples per number density. The BSC estimates of those cell pellets are made, and the concentric sphere model is applied. In addition to the high-concentration condition, this work improves the previous work also in the following ways. First, the relationship between BSC magnitude and number density is studied and compared to the BSC theory. Second, a Gaussian size distribution model is proposed from measured CHO cell and nuclear radii data, and is used for theoretical BSC determinations. The Gaussian distribution, compared to the uniform distribution used previously, is closer to the real condition. Third, the experimental setup has been improved such that more accurate data can be acquired.
THEORY AND SIMULATION
BSC theory: Identical scatterers
The BSC theory of the concentric sphere model has been discussed previously (Teisseire et al., 2010) and is briefly reviewed in this section. Suppose a plane wave of amplitude is incident on a scattering volume. BSC is defined as the differential scattering cross section per unit volume of scatters at 180° and may be expressed as
(1) |
where r is the distance from the scatterers to the observation point, which is assumed to be very large compared to the dimensions of the scattering volume, V is the scattering volume, and is the amplitude of the total backscattered wave.
Assuming the coherent field is not taken into account (waves do not interfere), and multiple scattering is ignored, the total intensity is the sum of the individual intensities from a randomly positioned ensemble of n scatterers, which gives
(2) |
where the factor can be expressed as corresponding to the number density of the ensemble, and is the amplitude of backscattered wave of an individual scatterer.
Now consider the two concentric fluid spheres entity as a single scatterer (Fig. 1). If a plane wave of amplitude is incident on such a scatterer, then the expression of the scattered acoustic pressure was given by McNew et al. (2009). Therefore, the BSC for this concentric sphere model can be calculated by inserting into Eq. 2. When applied to eukaryotic cells, the outer sphere represents the cytoplasm, and the inner sphere models the nucleus.
BSC simulation: Size distribution
The BSC can be affected by the distribution of scatterer size (Vlad et al., 2010; Saha et al., 2010). In the previous paper (Teisseire et al., 2010), it was assumed that the size of the CHO cells is identical and the nuclear radius follows a uniform distribution for simplicity. However, a measurement of 500 CHO cells (see Teisseire et al., 2010; Sec. 3A for measurement details) showed that the radii of both the cells and nuclei are better described by Gaussian distributions (Fig. 2). The cell radius is assumed to be a linear function of nuclear radius (Fig. 3) for modeling purposes.
For an ensemble of two concentric spheres, if the inner sphere radius has a Gaussian distribution with known mean and standard deviation, and if the outer sphere radius can be expressed as , then the theoretical BSC can be computed by
(3) |
where is the probability density function of the inner sphere radius.
For a Gaussian size distribution, the effect of size variance on BSC is simulated using Eq. 3 for the two concentric spheres model and shown in Fig. 4a. In the simulation, the actual range of the inner sphere radius is limited to [–3σ, + 3σ], where and σ are the mean and standard deviation of inner sphere radius. The result shows that the size variance mainly controls the magnitude of the BSC dip at the frequency of around k = 1. The smallest radius variance yields the deepest BSC dip in the high-frequency range, whereas the largest radius variance yields the shallowest BSC dip. In addition, the fraction of scatters with kr2 > 1 versus frequency for the four cases is shown [Fig. 4b] to illustrate the meaning of the std/mean ratio in the context of kr2.
METHODS
Experimental setup
The procedure of constructing the cell pellet biophantoms has been previously described (Teisseire et al., 2010; Sec. 3A). The biophantoms were ultrasonically scanned using two single-element transducers (NIH High-frequency Transducer Resource Center, University of Southern California, Los Angeles, CA, USA; see Table TABLE I.).
Table 1.
Center frequency (MHz) | –10 dB bandwidth (MHz) | Wavelength at center frequency (µm) | f-number | –6 dB Depth of field (mm) | –6 dB Beam width (µm) | Acquisition step size (µm) |
---|---|---|---|---|---|---|
40 | 26−65 | 37.5 | 3.0 | 2.4 | 112.5 | 60 |
80 | 49−105 | 18.8 | 3.0 | 1.2 | 56.4 | 30 |
The transducers were driven using a UTEX UT340 pulser/receiver (UTEX Scientific Instruments Inc., Mississauga, Ontario, Canada) which operated in the pitch-catch mode. A 50DR-001 BNC attenuator (JFW Industries Inc., Indianapolis, IN, USA) was connected to the pulser to attenuate the driving pulse in order to avoid transducer saturation. A RDX-6 diplexer (Ritec Inc., Warwick, RI, USA) was used to separate the transmitted and received signals because only the transmitted signal needs to be attenuated. The transducers were moved using a precision motion control system (Daedal Parker Hannifin Corporation, Irwin, PA, USA) that has a linear spatial accuracy of 1 μm. The analog echo signal was acquired using a 10-bit Agilent U1065A-002 A/D card (Agilent Technologies, Santa Clara, CA, USA) set to sample at 1 GHz.
The cell pellet is place in a small plastic tube and wrapped with a 10 -μm-thick plastic film (Saran Wrap; Reynolds, Richmond, VA, USA) (Fig. 5). The tube is filled with an F-12K medium (ATCC, Manassas, VA, USA) along with 8.98% of fetal bovine serum (Hyclone Laboratories, Logan, Utah, USA). Scans were performed in a tank filled with degassed water having a temperature between 21.5 and 22.5 °C. To scan the CHO biophantoms, the transducer focus was positioned in the cell pellet.
Data processing
The BSCs were computed from the RF echo data using the method described in Chen et al. (1997). This method is designed to remove equipment dependent effects by dividing the power spectrum of the measured data by a reference spectrum from the flat Plexiglas surface.
The best fit to the concentric sphere model was performed by minimizing the sum of the squares of the difference between theoretical and experimental BSCs. A least squares analysis was used to determine the parameters that best agreed with the experimental response in the spectral domain. Gaussian distributions are applied to both the cell and nuclear radii. The mean and standard deviation of the nuclear radius are assumed to be linked by std/mean = 0.19, as suggested by the real measurements (Fig. 2). The cell radius is linked to the nuclear radius by , where and are parameters to be fitted. Therefore, the parameters are (nuclear radius mean), , , ρ1, ρ2, c1, c2, and The background medium was assumed to have an impedance = 1.5 Mrayl (ρ0 = 1 g/mL and c0 = 1500 m/s). Even though the number density is a quantified parameter, it is still treated as an unknown parameter in the minimization procedure, functioning as a gain factor.
The problem of fitting multiple parameters was solved by the MATLAB (The Mathworks Inc., Natick, MA, USA) nonlinear curve-fitting function “lsqcurvefit,” wherein the trust-region-reflective algorithm was used as the nonlinear data-fitting approach.
RESULTS
Cell concentrations
Eighteen cell pellets of six different cell concentrations were evaluated (three cell pellets per concentration). The cell concentration is represented by number density and volume density, as shown in Table TABLE II..
Table 2.
Number density (Mcell/mL) | Volume density (mL/mL) | |
---|---|---|
Concentration 1 | 1.25 | 0.0017 |
Concentration 2 | 4.97 | 0.0066 |
Concentration 3 | 19.5 | 0.026 |
Concentration 4 | 72.3 | 0.096 |
Concentration 5 | 224 | 0.30 |
Concentration 6 | 473 | 0.63 |
The number density is defined as the number of cells per unit volume of total mixed materials, i.e.,
(4) |
where N is the total number of cells, and are the volumes of plasma and of thrombin, respectively, and is the estimated volume of total cells. Because there is a distribution in cell radius, the volume of one cell is calculated using a sphere radius of 6.82 , which is determined by the expression , where is the measured cell radius.
The volume density (or volume fraction) is defined as the ratio of cell volume to pellet volume, where the volume of cells and the volume of the cell pellet are determined using the method described for the number density. Volume density reveals straightforwardly how close the number density is to the limit. Note that the higher concentrations are close to the upper limit of unity.
The cell concentration is also shown by the histology photos in Fig. 6. The figure shows that 1.25 and 4.97 Mcell/mL are relatively low cell concentrations, whereas the concentration of 473 Mcell/mL cell pellet is indeed quite close to the limiting case.
Cell pellet attenuation
Attenuation compensation is essential for this study because the attenuation is large at high frequencies and the fit parameters can be very sensitive to the magnitude and shape of the BSC vs. frequency curves. The attenuation of the cell pellets is measured using an insertion-loss broadband technique (Wear et al., 2005) for each of the two transducers (Table TABLE I.). The effect of water attenuation is not negligible in the 20–100 MHz frequency range. Therefore, the following equation is used to calculate cell pellet attenuation:
(5) |
where is the frequency-dependent attenuation (dB/cm) of the cell pellet, and is the attenuation of the F-12K medium, taken to be similar to water, at 20 °C (Duck, 1990), because in-house measurements of the F-12K medium were consistent with water. is the thickness of the cell pellet, and f is the frequency (MHz). is the amplitude spectrum of the reference signal, the signal reflected back from a flat steel surface without the presence of the cell pellet. is the amplitude spectrum of the reflected signal from the steel surface when the cell pellet is placed between the transducer and the steel surface. The cell pellet attenuation vs. frequency curves at various cell concentrations are shown in Fig. 7.
The following equation is fitted to the cell pellet attenuation vs. frequency curves:
(6) |
where is in dB/cm, and f is in MHz. The fit parameters β and n for various concentrations are listed in Table TABLE III..
Table 3.
Number density | β | n |
---|---|---|
0 Mcell/mL | 0.021 | 1.6 |
72.3 Mcell/mL | 0.019 | 1.7 |
224 Mcell/mL | 0.025 | 1.7 |
473 Mcell/mL | 0.15 | 1.4 |
Transmission compensation
The ultrasonic transmission properties of the Saran layer were measured and employed in the transmission compensation of BSC calculation. The transmission coefficient vs. frequency curve (Fig. 8) of the three layer media (water-Saran-water) was measured using an insertion-loss broadband technique (Wear et al., 2005) from 1 to 100 MHz. A reference signal was obtained using the specular reflection from Plexiglas placed at the transducer focus in degassed water. Then, a layer of Saran was inserted to the ultrasonic pathway and was held such that the Saran was parallel to the Plexiglas surface. The distance between the Saran and Plexiglas surface was 1.6 mm so that the diffraction caused by the insertion of Saran was negligible. The following equation is used to calculate the transmission coefficient through water-Saran-water interface (round-trip, the pulse transmitted through the Saran layer twice in this experimental setup):
(7) |
where is the frequency-dependent transmission coefficient, is the amplitude spectrum of the reference signal and is the amplitude spectrum of the reflected signal from the Plexiglas when the Saran is placed above the Plexiglas. The measured curve is not a cosinusoid-like curve as predicted by the three-layer transmission theory [Wear et al., 2005, Eq. 3]. The measured curve was directly used for transmission compensation, without being fitted to any theoretical model.
BSC results
BSC estimates of all the cell pellets in this study are shown in Fig. 9a. The BSC vs. frequency curves for different concentrations share a similar pattern in the sense that a peak in the BSC magnitude is followed by a dip, as frequency increases. In spite of that, the BSC changes with increasing number density: the BSC magnitude increases; the dynamic range of BSC increases; and the positions of the peak and dip vary slightly. Thus, number density affects both the magnitude and the shape of BSC.
Because the three lower concentrations are the same as the previous study, a comparison between the current and the former BSC data is provided [Fig. 9b]. The BSC estimates in the two studies are consistent. The repeatability of the results indicates that this biophantom methodology could be a useful technique of evaluating scattering models for biological materials.
Least squares parameter estimates
The best-fit theoretical BSCs of all biophantom samples are calculated using the least squares technique; each biophantom was scanned with two transducers (Table TABLE I.). Figure 10 provides an indication of how the fitted BSC curves (one fitted BSC curve for each biophantom) are compared to the BSC estimates. It could be observed from this figure that the highest concentration has the worst fit. The estimated parameters of the theoretical models are summarized in Fig. 11. The mean values are averages of the three cell pellets for each cell concentration. The standard deviations are calculated based on the three samples per concentration.
The estimated cell radii agree well with the directly measured radii for low-concentration conditions (1.25, 4.97, 19.5, 72.3 Mcell/mL), showing that the combination of concentric spheres model and least squares method makes it possible to predict cell radius using the BSC information. For higher concentration cell pellets (224, 473 Mcell/mL), the cell radius has been underestimated. In fact, Fig. 11a shows that the estimated cell radius decreases as the cell concentration increases except for the 19.5 Mcell/mL case (7.9, 7.3, 7.6, 6.8, 4.8, 3.6 μm for 1.25, 4.97, 19.7, 72.3, 224, 473 Mcells/mL cell pellets, respectively). The underestimate of the cell radius when the cell concentration is large suggests that at high cell concentration either the cells can no longer be modeled as concentric spheres (structural and shape changes) or the total intensity cannot be calculated as the sum of the individual cells intensities (coherent scattering and multiple scattering) or perhaps both. Either way indicates that the concentric spheres model is losing its applicability for large cell concentrations.
In terms of the estimated speed of sound, density, and acoustic impedance, discrepancy exists between the values estimated for the lower concentrations in this study and those in the previous work (Teisseire et al., 2010). For instance, the estimated acoustic impedance of the nucleus for the lower concentrations in this paper ranges between 1.9 and 2.6 Mrayl, whereas the value is close to 1.6 Mrayl in the previous publication. There could be several reasons for this discrepancy. First, the methods of processing the data are different. The uniform size distribution was used previously. The estimated parameters are from one realization per number density. In the present study, the Gaussian size distribution is used, and the estimated parameters are averages of three realizations per number density. Second, the discrepancy could be a sign that the BSC is more sensitive to the cell sizes but less sensitive to the speeds and densities. Therefore, the concentric sphere model is not ideal in determining the speeds and densities from BSC.
The fitted parameters for the largest concentration seem to be outliers. Those values are actually beyond the range of reasonable values. For instance, the estimated density of cytoplasm is greater than 2 g/mL, and the estimated sound speed in cytoplasm is less than 1000 m/s. Such values are not in agreement with density and sound speed in water. Because the cytoplasm contains mainly water, reasonable properties of cytoplasm should be close to those of sea water, as is also shown by the estimates from cell pellets of other concentrations. The deviation of estimated parameters from reasonable values at high cell concentration is a further indication that at high cell concentration either the cells can no longer be modeled as concentric spheres or the total intensity cannot be calculated as the sum of the individual cells intensities, or both.
BSC magnitude vs. number density
Besides frequency dependence, the BSC magnitude also appears to provide important information. The BSC magnitude increases with cell concentration, as is qualitatively shown in Fig. 9a. In fact, Eq. 2 predicts that BSC is linearly proportional to number density. To investigate whether that prediction is observed, the BSC as a function of number density is fitted to the power law relationship. The fitted power exponent as a function of frequency is displayed in Fig. 12. The curve has three discontinuous segments because data from different transducers are used. The data from the 40 and 80 MHz transducers are used for the left and right segments, respectively, whereas the middle segment is determined using the data from both transducers (the data from both transducers were averaged). The fitted power exponent is an indicator of how the BSC changes with number density. If the BSC is linearly proportional to number density, then the fitted power exponent will be unity. Figure 12 indicates that BSC is not linearly proportional to number density. The BSC increases less than linear with number density below 50 MHz and above 70 MHz, whereas it increases greater than linear with number density around 60 MHz.
The observed BSC vs. concentration relationship (fitted power exponent being less than unity) at low frequency has been found previously in blood characterization and physical phantom studies. For instance, Shung et al. (1984) found that the backscattered power drops when the concentration of erythrocytes in blood surpasses 30%. Similar finding was also reported by Chen et al. (1996) for physical phantoms. Those previous findings are in the Rayleigh region and have been attributed to coherent scattering because when the scatterer volume fraction is high, the assumption of a random distribution of scatterers fails due to the correlation among the scatterers. Thus the BSC vs. concentration relationship at low frequency (Rayleigh region) found in our experiment might also be attributed to coherent scattering. What is new in our result is that at 60 MHz where the wavelength is comparable to cell size (, where k is acoustic wave number and a is cell radius), the BSC increases approximately linearly (fitted power exponent is 1.04) as the concentration becomes high. At 90 MHz, the BSC starts to increase slower again for high concentrations. Therefore, instead of simply decreasing BSC as is in the case of Rayleigh scattering, the cell concentration has a more complicated effect on BSC when wavelength is comparable to the scatterer size.
DISCUSSION
The shape of measured BSC vs. frequency curves, the least squares concentric sphere model estimates and the observed BSC magnitude vs. number density relationships all suggest that the concentric sphere model is good for low concentrations but starts to break down at high cell concentration because the acoustic scattering becomes more complicated. There are a number of possible explanations for this observation. First, coherent scattering may play a role because the assumption of random position of cells may no longer be true as the cells get close to each other. The possible regularity of cell positions can have either constructive or destructive effect on the total scattered energy depending on the frequency. Using this hypothesis, we may conclude that the effect of coherent scattering is mainly destructive in the 20 to 100 MHz frequency range except for the frequencies around 60 MHz (Fig. 12). Second, the scattering site may start to change. For example, the background medium becomes isolated by cells, which makes it possible that the background medium effectively becomes the scattering source. It is also possible that the main interface responsible for the scattering is between the nucleus and cytoplasm of the cells, whereas in the lower concentrations it is primarily the cytoplasm-background boundary. This possibility is supported by the decreasing trend of fitted radii with increasing number density. Third, multiple scattering may also play a role considering how close the cells are to each other. Additionally, the shape of cells may start to change as well when they are getting closer to one another.
The above results and discussion have suggested that the concentric sphere model is not applicable at high concentrations. Then when does the model start to be adversely affected by the high concentration effect? From our results, the parameter estimates of the 72.3 Mcell/mL (volume density 10%) CHO cell pellet does not seem to be affected, while the parameter (cell radius) estimate of the 224 Mcell/mL (volume density 30%) cell pellets is affected (e.g., cell radius is underestimated). Therefore, it is suggested that the critical volume density is between 10% and 30%.
CONCLUSIONS
The acoustic scattering at high cell concentration is more complicated than that at low concentration. The low cell concentration parameter estimates appear to yield reasonable size and composition values. The high cell concentration has a significant impact on the measured backscatter coefficients for which the concentric sphere model starts to break down. The critical volume density, starting from when the model becomes inapplicable, is between 10% and 30%. Above this critical volume density, another scattering model is likely to be effective.
ACKNOWLEDGMENTS
This work was supported by NIH Grant R01CA111289. The authors would like to thank Saurabh Kukreti, Michael Kurowski, Matt Lee, and Eugene Park from the University of Illinois at Urbana-Champaign for their assistance with data acquisitions and attenuation measurements.
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