Skip to main content
Nucleic Acids Research logoLink to Nucleic Acids Research
. 1983 Oct 25;11(20):7251–7260. doi: 10.1093/nar/11.20.7251

The elongation of mismatched primers by DNA polymerase alpha from calf thymus.

B Reckmann, F Grosse, G Krauss
PMCID: PMC326461  PMID: 6634414

Abstract

The ability of the 9S and 5.7S DNA polymerase alpha subspecies from calf thymus in elongating a mismatched primer terminus has been investigated. With poly(dA) as template, the elongation rate for (dT)8dG, (dT)8dC and (dT)10dGdT is 20-fold lower for the 9S enzyme and 5-fold lower for the 5.7S enzyme as compared to (dT)10. The presence of a second mismatch at the primer terminus reduces the elongation rate further by a factor of two. Exonucleolytic excision of the mismatches can be excluded. With (dT)8dG (dT)n as primer we show, that at least five T-residues have to follow the mismatch in order to establish the elongation rate of a perfectly paired primer. The KM value for (dT)10 dG as primer is 400 nM as compared to 10 nM for (dT)10. Addition of Mn2+ increases the relative efficiency of elongation of the mismatched primers.

Full text

PDF
7251

Images in this article

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Bhalla R. B., Schwartz M. K., Modak M. J. Selective inhibition of terminal deoxynucleotidyl transferase (TdT) by adenosine ribonucleoside triphosphate (ATP) and its application in the detection of TdT in human leukemia. Biochem Biophys Res Commun. 1977 Jun 20;76(4):1056–1061. doi: 10.1016/0006-291x(77)90963-9. [DOI] [PubMed] [Google Scholar]
  2. Brosius S., Grosse F., Krauss G. Subspecies of DNA polymerase alpha from calf thymus with different fidelity in copying synthetic template-primers. Nucleic Acids Res. 1983 Jan 11;11(1):193–202. doi: 10.1093/nar/11.1.193. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Conaway R. C., Lehman I. R. Synthesis by the DNA primase of Drosophila melanogaster of a primer with a unique chain length. Proc Natl Acad Sci U S A. 1982 Aug;79(15):4585–4588. doi: 10.1073/pnas.79.15.4585. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Fasiolo F., Befort N., Boulander Y., Ebel J. P. Purification et quelques propriétés de la phenylalanyl-tRNA synthetase de levure de boulangerie. Biochim Biophys Acta. 1970 Oct 15;217(2):305–318. [PubMed] [Google Scholar]
  5. Fersht A. R. Fidelity of replication of phage phi X174 DNA by DNA polymerase III holoenzyme: spontaneous mutation by misincorporation. Proc Natl Acad Sci U S A. 1979 Oct;76(10):4946–4950. doi: 10.1073/pnas.76.10.4946. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Goodman M. F., Keener S., Guidotti S., Branscomb E. W. On the enzymatic basis for mutagenesis by manganese. J Biol Chem. 1983 Mar 25;258(6):3469–3475. [PubMed] [Google Scholar]
  7. Grosse F., Krauss G., Knill-Jones J. W., Fersht A. R. Accuracy of DNA polymerase-alpha in copying natural DNA. EMBO J. 1983;2(9):1515–1519. doi: 10.1002/j.1460-2075.1983.tb01616.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Grosse F., Krauss G. Purification and partial characterization of a DNA polymerase alpha species from calf thymus. Nucleic Acids Res. 1980 Dec 11;8(23):5703–5714. doi: 10.1093/nar/8.23.5703. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Grosse F., Krauss G. Purification of a 9S DNA polymerase alpha species from calf thymus. Biochemistry. 1981 Sep 15;20(19):5470–5475. doi: 10.1021/bi00522a019. [DOI] [PubMed] [Google Scholar]
  10. Kunkel T. A., Eckstein F., Mildvan A. S., Koplitz R. M., Loeb L. A. Deoxynucleoside [1-thio]triphosphates prevent proofreading during in vitro DNA synthesis. Proc Natl Acad Sci U S A. 1981 Nov;78(11):6734–6738. doi: 10.1073/pnas.78.11.6734. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Kunkel T. A., Loeb L. A. Fidelity of mammalian DNA polymerases. Science. 1981 Aug 14;213(4509):765–767. doi: 10.1126/science.6454965. [DOI] [PubMed] [Google Scholar]
  12. Maniatis T., Jeffrey A., van deSande H. Chain length determination of small double- and single-stranded DNA molecules by polyacrylamide gel electrophoresis. Biochemistry. 1975 Aug 26;14(17):3787–3794. doi: 10.1021/bi00688a010. [DOI] [PubMed] [Google Scholar]
  13. Sinha N. K., Haimes M. D. Molecular mechanisms of substitution mutagenesis. An experimental test of the Watson-Crick and topal-fresco models of base mispairings. J Biol Chem. 1981 Oct 25;256(20):10671–10683. [PubMed] [Google Scholar]
  14. Sirover M. A., Dube D. K., Loeb L. A. On the fidelity of DNA replication. Metal activation of Escherichia coli DNA polymerase I. J Biol Chem. 1979 Jan 10;254(1):107–111. [PubMed] [Google Scholar]

Articles from Nucleic Acids Research are provided here courtesy of Oxford University Press

RESOURCES