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. 1982 Nov 25;10(22):7425–7438. doi: 10.1093/nar/10.22.7425

Effect of rifampicin on expression of lacZ fused to promoters or terminators of the E.coli rpoBC operon.

K M Howe, A J Newman, I Garner, A Wallis, R S Hayward
PMCID: PMC327015  PMID: 6296776

Abstract

The genes encoding the beta and beta' subunits of RNA polymerase in E.coli lie downstream of at least two ribosomal protein genes in a single unit of transcription. Treatment of E.coli with rifampicin, under conditions producing partial inhibition of general RNA synthesis, can strongly stimulate transcription of the polymerase genes, while activating the neighbouring ribosomal genes only slightly. We have investigated the mechanism of this effect by fusing strong promoters, a weak internal promoter, and an attenuator of the polymerase operon to the lacZ gene, in derivatives of plasmid pMC81. Studies of these fusions confirm our conclusion, based on similar fusions to galK, that rifampicin can foster readthrough of transcriptional terminators. They also suggest the existence of extra terminators and anti-termination elements in the above transcription unit.

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Selected References

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  1. Adhya S., Gottesman M. Control of transcription termination. Annu Rev Biochem. 1978;47:967–996. doi: 10.1146/annurev.bi.47.070178.004535. [DOI] [PubMed] [Google Scholar]
  2. An G., Friesen J. D. Characterization of promoter-cloning plasmids: analysis of operon structure in the rif region of Escherichia coli and isolation of an enhanced internal promoter mutant. J Bacteriol. 1980 Dec;144(3):904–916. doi: 10.1128/jb.144.3.904-916.1980. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Barry G., Squires C. L., Squires C. Control features within the rplJL-rpoBC transcription unit of Escherichia coli. Proc Natl Acad Sci U S A. 1979 Oct;76(10):4922–4926. doi: 10.1073/pnas.76.10.4922. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Barry G., Squires C., Squires C. L. Attenuation and processing of RNA from the rplJL--rpoBC transcription unit of Escherichia coli. Proc Natl Acad Sci U S A. 1980 Jun;77(6):3331–3335. doi: 10.1073/pnas.77.6.3331. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Blumenthal R. M., Dennis P. P. Gene expression in Escherichia coli B/r during partial rifampicin-mediated restrictions of transcription initiation. Mol Gen Genet. 1978 Sep 20;165(1):79–86. doi: 10.1007/BF00270379. [DOI] [PubMed] [Google Scholar]
  6. Brückner R., Matzura H. In vivo synthesis of a polycistronic messenger RNA for the ribosomal proteins L11, L1, L10 and L7/12 in Escherichia coli. Mol Gen Genet. 1981;183(2):277–282. doi: 10.1007/BF00270629. [DOI] [PubMed] [Google Scholar]
  7. Casadaban M. J., Cohen S. N. Analysis of gene control signals by DNA fusion and cloning in Escherichia coli. J Mol Biol. 1980 Apr;138(2):179–207. doi: 10.1016/0022-2836(80)90283-1. [DOI] [PubMed] [Google Scholar]
  8. Crawford I. P., Nichols B. P., Yanofsky C. Nucleotide sequence of the trpB gene in Escherichia coli and Salmonella typhimurium. J Mol Biol. 1980 Oct 5;142(4):489–502. doi: 10.1016/0022-2836(80)90259-4. [DOI] [PubMed] [Google Scholar]
  9. Dennis P. P., Fill N. P. Transcriptional and post-transcriptional control of RNA polymerase and ribosomal protein genes cloned on composite ColE1 plasmids in the bacterium Escherichia coli. J Biol Chem. 1979 Aug 25;254(16):7540–7547. [PubMed] [Google Scholar]
  10. Dennis P. P. Transcription patterns of adjacent segments on the chromosome of Escherichia coli containing genes coding for four 50S ribosomal proteins and the beta and beta' subunits of RNA polymerase. J Mol Biol. 1977 Oct 5;115(4):603–625. doi: 10.1016/0022-2836(77)90105-x. [DOI] [PubMed] [Google Scholar]
  11. Greenfield L., Boone T., Wilcox G. DNA sequence of the araBAD promoter in Escherichia coli B/r. Proc Natl Acad Sci U S A. 1978 Oct;75(10):4724–4728. doi: 10.1073/pnas.75.10.4724. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Hayward R. S., Fyfe S. K. Non-coordinate expression of the neighbouring genes rplL and rpoB,C of Escherichia coli. Mol Gen Genet. 1978 Mar 20;160(1):77–80. doi: 10.1007/BF00275121. [DOI] [PubMed] [Google Scholar]
  13. Kingston R. E., Nierman W. C., Chamberlin M. J. A direct effect of guanosine tetraphosphate on pausing of Escherichia coli RNA polymerase during RNA chain elongation. J Biol Chem. 1981 Mar 25;256(6):2787–2797. [PubMed] [Google Scholar]
  14. Kirschbaum J. B., Konrad E. B. Isolation of a specialized lambda transducing bacteriophage carrying the beta subunit gene for Escherichia coli ribonucleic acid polymerase. J Bacteriol. 1973 Nov;116(2):517–526. doi: 10.1128/jb.116.2.517-526.1973. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Lindahl L., Zengel J. M. Expression of ribosomal genes in bacteria. Adv Genet. 1982;21:53–121. doi: 10.1016/s0065-2660(08)60297-7. [DOI] [PubMed] [Google Scholar]
  16. Lindahl S., Yamamoto M., Nomura M. Mapping of a cluster of genes for components of the transcriptional and translational machineries of Escherichia coli. J Mol Biol. 1977 Jan 5;109(1):23–47. doi: 10.1016/s0022-2836(77)80044-2. [DOI] [PubMed] [Google Scholar]
  17. Matzura B. Regulation of biosynthesis of the DNA-dependent RNA polymerase in Escherichia coli. Curr Top Cell Regul. 1980;17:89–136. doi: 10.1016/b978-0-12-152817-1.50008-0. [DOI] [PubMed] [Google Scholar]
  18. McAllister W. T., Barrett C. L. Hybridization mapping of restriction fragments from the early region of bacteriophage T7 DNA. Virology. 1977 Oct 15;82(2):275–287. doi: 10.1016/0042-6822(77)90003-4. [DOI] [PubMed] [Google Scholar]
  19. Murray N. E., Brammar W. J., Murray K. Lambdoid phages that simplify the recovery of in vitro recombinants. Mol Gen Genet. 1977 Jan 7;150(1):53–61. doi: 10.1007/BF02425325. [DOI] [PubMed] [Google Scholar]
  20. Nakamura Y., Yura T. Induction of sigma factor synthesis in Escherichia coli by the N gene product of bacteriophage lambda. Proc Natl Acad Sci U S A. 1976 Dec;73(12):4405–4409. doi: 10.1073/pnas.73.12.4405. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Oppenheim D. S., Yanofsky C. Translational coupling during expression of the tryptophan operon of Escherichia coli. Genetics. 1980 Aug;95(4):785–795. doi: 10.1093/genetics/95.4.785. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Post L. E., Strycharz G. D., Nomura M., Lewis H., Dennis P. P. Nucleotide sequence of the ribosomal protein gene cluster adjacent to the gene for RNA polymerase subunit beta in Escherichia coli. Proc Natl Acad Sci U S A. 1979 Apr;76(4):1697–1701. doi: 10.1073/pnas.76.4.1697. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Tittawella I. P., Hayward R. S. Different effects of rifampicin and streptolydigin on the control of RNA polymerase subunit synthesis in Escherichia coli. Mol Gen Genet. 1974;134(2):181–186. doi: 10.1007/BF00268419. [DOI] [PubMed] [Google Scholar]
  24. Yates J. L., Dean D., Strycharz W. A., Nomura M. E. coli ribosomal protein L10 inhibits translation of L10 and L7/L12 mRNAs by acting at a single site. Nature. 1981 Nov 12;294(5837):190–192. doi: 10.1038/294190a0. [DOI] [PubMed] [Google Scholar]
  25. Yura T., Ishihama A. Genetics of bacterial RNA polymerases. Annu Rev Genet. 1979;13:59–97. doi: 10.1146/annurev.ge.13.120179.000423. [DOI] [PubMed] [Google Scholar]

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