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. 1981 Sep 25;9(18):4783–4798. doi: 10.1093/nar/9.18.4783

The transitions between left- and right-handed forms of poly(dG-dC).

V I Ivanov, E E Minyat
PMCID: PMC327475  PMID: 7301587

Abstract

The circular dichroism study of water/trifluoroethanol (TFE) solutions of poly(dG-dC) has revealed the following: The polynucleotide is present as a B form up to a TFE content of 60% (v/v) or less. Then, a cooperative transition into a left-handed Z form occurs. Within the region of 66-78% TFE, a continuous non-cooperative change is going on which can be attributed to an intrafamily transition within the family of Z forms. At last, in the interval of 80-84% TFE, a second cooperative transition, probably, Z - A is realized. Both transitions, Z - A and Z - B, show slow kinetics (10-60 min) while the direct transitions from the A to B form taking less than 10 sec. The length of cooperativity for the B - Z transition, Vo = 25 base pairs was estimated using spermine molecules. Spermine was found to induce the B to Z transition in the (dG-dC) sequences even in the absence of TFE which might be biologically interesting.

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Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Arnott S., Chandrasekaran R., Birdsall D. L., Leslie A. G., Ratliff R. L. Left-handed DNA helices. Nature. 1980 Feb 21;283(5749):743–745. doi: 10.1038/283743a0. [DOI] [PubMed] [Google Scholar]
  2. Arnott S. The geometry of nucleic acids. Prog Biophys Mol Biol. 1970;21:265–319. doi: 10.1016/0079-6107(70)90027-1. [DOI] [PubMed] [Google Scholar]
  3. Baase W. A., Johnson W. C., Jr Circular dichroism and DNA secondary structure. Nucleic Acids Res. 1979 Feb;6(2):797–814. doi: 10.1093/nar/6.2.797. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Depew D. E., Wang J. C. Conformational fluctuations of DNA helix. Proc Natl Acad Sci U S A. 1975 Nov;72(11):4275–4279. doi: 10.1073/pnas.72.11.4275. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Drew H., Takano T., Tanaka S., Itakura K., Dickerson R. E. High-salt d(CpGpCpG), a left-handed Z' DNA double helix. Nature. 1980 Aug 7;286(5773):567–573. doi: 10.1038/286567a0. [DOI] [PubMed] [Google Scholar]
  6. Frank-Kamenetskii M. D., Lazurkin Y. S. Conformational changes in DNA molecules. Annu Rev Biophys Bioeng. 1974;3(0):127–150. doi: 10.1146/annurev.bb.03.060174.001015. [DOI] [PubMed] [Google Scholar]
  7. Gennis R. B., Cantor C. R. Optical studies of a conformational change in DNA before melting. J Mol Biol. 1972 Apr 14;65(3):381–399. doi: 10.1016/0022-2836(72)90196-9. [DOI] [PubMed] [Google Scholar]
  8. Ivanov V. I., Minchenkova L. E., Schyolkina A. K., Poletayev A. I. Different conformations of double-stranded nucleic acid in solution as revealed by circular dichroism. Biopolymers. 1973;12(1):89–110. doi: 10.1002/bip.1973.360120109. [DOI] [PubMed] [Google Scholar]
  9. Karapetyan N. V., Krakhmaleva I. N., Krasnovskii A. A. Effect of detergents on photoinduced changes of absorption of Chromatium minutissimum chromatophores. Mol Biol. 1972 Sep-Oct;6(5):624–631. [PubMed] [Google Scholar]
  10. Malenkov G., Minchenkova L., Minyat E., Schyolkina A., Ivanov V. The nature of the B-A transition of DNA in solution. FEBS Lett. 1975 Mar 1;51(1):38–42. doi: 10.1016/0014-5793(75)80850-7. [DOI] [PubMed] [Google Scholar]
  11. Minyat E. E., Ivanov V. I., Kritzyn A. M., Minchenkova L. E., Schyolkina A. K. Spermine and spermidine-induced B to A transition of DNA in solution. J Mol Biol. 1979 Mar 5;128(3):397–409. doi: 10.1016/0022-2836(79)90094-9. [DOI] [PubMed] [Google Scholar]
  12. Mitra C. K., Sarma M. H., Sarma R. H. Left-handed deoxyribonucleic acid double helix in solution. Biochemistry. 1981 Mar 31;20(7):2036–2041. doi: 10.1021/bi00510a046. [DOI] [PubMed] [Google Scholar]
  13. Pohl F. M., Jovin T. M. Salt-induced co-operative conformational change of a synthetic DNA: equilibrium and kinetic studies with poly (dG-dC). J Mol Biol. 1972 Jun 28;67(3):375–396. doi: 10.1016/0022-2836(72)90457-3. [DOI] [PubMed] [Google Scholar]
  14. Pohl F. M. Polymorphism of a synthetic DNA in solution. Nature. 1976 Mar 25;260(5549):365–366. doi: 10.1038/260365a0. [DOI] [PubMed] [Google Scholar]
  15. Polet A. I., Ivanov V. I., Minchenkova L. E. Konformatsinnyi perekhod vnutri semeistva A-form komplementarnykh nukleinovykh kislot. Mol Biol (Mosk) 1976 May-Jun;10(2):675–682. [PubMed] [Google Scholar]
  16. Rodley G. A., Scobie R. S., Bates R. H., Lewitt R. M. A possible conformation for double-stranded polynucleotides. Proc Natl Acad Sci U S A. 1976 Sep;73(9):2959–2963. doi: 10.1073/pnas.73.9.2959. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Sasisekharan V., Pattabiraman N., Gupta G. Some implications of an alternative structure for DNA. Proc Natl Acad Sci U S A. 1978 Sep;75(9):4092–4096. doi: 10.1073/pnas.75.9.4092. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Shchelkina A. K., Minchenkova L. E., Ivanov V. I. Vliianie temperatury na parametry dvoinoi spirali DNK v rastvorakh. Mol Biol (Mosk) 1977 Mar-Apr;11(2):466–472. [PubMed] [Google Scholar]
  19. Wang A. H., Quigley G. J., Kolpak F. J., Crawford J. L., van Boom J. H., van der Marel G., Rich A. Molecular structure of a left-handed double helical DNA fragment at atomic resolution. Nature. 1979 Dec 13;282(5740):680–686. doi: 10.1038/282680a0. [DOI] [PubMed] [Google Scholar]
  20. Zavriev S. K., Minchenkova L. E., Frank-Kamenetskii M. D., Ivanov V. I. On the flexibility of the boundaries between the A-form and B-form sections in DNA molecule. Nucleic Acids Res. 1978 Jul;5(7):2657–2663. doi: 10.1093/nar/5.7.2657. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Zimmer C., Luck G. Conformation and reactivity of DNA. VI. Circular dichroism studies of salt-induced conformational changes of DNAs of different base composition. Biochim Biophys Acta. 1974 Aug 15;361(1):11–32. [PubMed] [Google Scholar]

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