Skip to main content
Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Jan 7;68(Pt 2):o275. doi: 10.1107/S1600536811054559

1,3-Dimethyl 5-(4,4,5,5-tetra­methyl-1,3,2-dioxaborolan-2-yl)benzene-1,3-dicarboxyl­ate

Long-tao Yi a,*, Zhi-qiang Liu b
PMCID: PMC3274972  PMID: 22346917

Abstract

The title compound, C16H21BO6, has has approximate C 2 symmetry, but no crystallographically imposed mol­ecular symmetry. In the crystal, mol­ecules are packed into parallel columns along the a axis. Short inter­molecular C—H⋯O contacts stabilize the crystal packing.

Related literature

For the synthesis of organoboronic esters, see: Kikuchi et al. (2008). For the synthesis of the title compound, see: Coventry et al. (2005).graphic file with name e-68-0o275-scheme1.jpg

Experimental

Crystal data

  • C16H21BO6

  • M r = 320.14

  • Orthorhombic, Inline graphic

  • a = 7.2163 (2) Å

  • b = 20.9627 (4) Å

  • c = 22.4624 (4) Å

  • V = 3397.96 (13) Å3

  • Z = 8

  • Mo Kα radiation

  • μ = 0.09 mm−1

  • T = 296 K

  • 1.00 × 0.40 × 0.20 mm

Data collection

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2005) T min = 0.766, T max = 0.982

  • 22413 measured reflections

  • 3864 independent reflections

  • 2177 reflections with I > 2σ(I)

  • R int = 0.043

Refinement

  • R[F 2 > 2σ(F 2)] = 0.046

  • wR(F 2) = 0.142

  • S = 1.01

  • 3864 reflections

  • 215 parameters

  • H-atom parameters constrained

  • Δρmax = 0.18 e Å−3

  • Δρmin = −0.14 e Å−3

Data collection: APEX2 (Bruker, 2005); cell refinement: SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP in SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811054559/bt5730sup1.cif

e-68-0o275-sup1.cif (23.1KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811054559/bt5730Isup4.hkl

e-68-0o275-Isup4.hkl (185.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811054559/bt5730Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C16—H16C⋯O4i 0.96 2.53 3.381 (3) 148

Symmetry code: (i) Inline graphic.

supplementary crystallographic information

Comment

Arylboronic acids and arylborates are the key reagents in Suzuki-Miyaura coupling reaction. Transition metal-catalyzed C—H borylation of arenes is a direct, economical and environmentally kind method to synthesize organoboronic esters and is widely studied (Kikuchi et al., 2008). Recently, we have synthesized the title compound by direct Ir-catalyzed borylation and determined its X-ray structure.

The two meta-position methoxycarbonyl are almost co-planar with the benzene ring. The C—B bond is 1.556 (2) Å. Because the borolane ring adopts a somewhat twist conformation and C2, C9 atoms displace to opposite sides of the BO2 plane, the title molecule has no crystallographic symmetry.

The molecules pack into columns along the a- axis uniformly and exhibit paralled patterns. Besides, there are some short intermolecular O···H (for example, O3···H8a, O4···H16c distances are 2.636 Å, 2.530 Å, respectively). We believe that these short intermolecular contacts are helpful for stabilization of the molecular packing in crystals.

Experimental

The title compound was synthesized via Ir-catalyzed borylation (Coventry et al., 2005) of diethyl isophthalate. Catalyst precursor [Ir(COD)]Cl]2 (60 mg) and ligand dtbpy (4,4'-di-tert-bultyl-2,2'-dipyridyl) (120 mg) with a small amount of B2pin2 (pin=O2C2Me4) ((160 mg) were loaded in a Schlenk tube and dissolved in 2 ml THF under argon. The mixture was stirred vigorously till the bluish violet solution turned to amaranthine. Then diethyl isophthalate (1.94 g, 10.0 mmol) and B2pin2 (2.54 g, 10.0 mmol) in 15 ml THF was added into this tube. The mixture was heated in oil bath at 80°C for 24 h. After cooling to room temperature, the mixture then went through a short silica pad to remove the residual Ir catalyst and the final compound was purified by column chromatography using dichloromethane, giving 2.56 g (80% yield) white crystalline product. Crystals were grown by slow evaporation of a hexane solution.

Figures

Fig. 1.

Fig. 1.

Molecular structure of the title compound. Displacement elliposoid is drawn at 50% probability level.

Fig. 2.

Fig. 2.

The packing pattern of the title molecules in crystal viewed down the a- axis. O···H and B···H intermolecular short contacts are also showed.

Crystal data

C16H21BO6 F(000) = 1360
Mr = 320.14 Dx = 1.252 Mg m3
Orthorhombic, Pbca Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2ab Cell parameters from 3703 reflections
a = 7.2163 (2) Å θ = 2.7–20.6°
b = 20.9627 (4) Å µ = 0.09 mm1
c = 22.4624 (4) Å T = 296 K
V = 3397.96 (13) Å3 Pod, colourless
Z = 8 1.00 × 0.40 × 0.20 mm

Data collection

Bruker APEXII CCD diffractometer 3864 independent reflections
Radiation source: fine-focus sealed tube 2177 reflections with I > 2σ(I)
graphite Rint = 0.043
φ and ω scans θmax = 27.5°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2005) h = −9→9
Tmin = 0.766, Tmax = 0.982 k = −27→26
22413 measured reflections l = −27→29

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.046 H-atom parameters constrained
wR(F2) = 0.142 w = 1/[σ2(Fo2) + (0.0653P)2 + 0.3179P] where P = (Fo2 + 2Fc2)/3
S = 1.01 (Δ/σ)max < 0.001
3864 reflections Δρmax = 0.18 e Å3
215 parameters Δρmin = −0.14 e Å3
0 restraints Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methods Extinction coefficient: 0.0031 (5)

Special details

Experimental. SADABS (Bruker, 2005) was used for absorption correction. R(int) was 0.0776 before and 0.0475 after correction. The Ratio of minimum to maximum transmission is 0.9190. The λ/2 correction factor is Not present.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.67152 (17) 0.13558 (5) 0.42187 (5) 0.0525 (4)
O2 0.6570 (2) 0.16197 (6) 0.20099 (6) 0.0739 (5)
O3 0.74902 (17) 0.03889 (5) 0.46030 (5) 0.0484 (3)
O4 0.6855 (2) 0.08265 (7) 0.13639 (6) 0.0817 (5)
O5 0.8187 (2) −0.14641 (6) 0.32004 (7) 0.0785 (5)
O6 0.8121 (3) −0.13786 (7) 0.22123 (7) 0.0903 (6)
C1 0.4427 (3) 0.13373 (9) 0.49842 (10) 0.0679 (6)
H1A 0.3750 0.1642 0.4751 0.102*
H1B 0.4192 0.1411 0.5399 0.102*
H1C 0.4037 0.0914 0.4880 0.102*
C2 0.6479 (2) 0.14086 (7) 0.48620 (8) 0.0439 (4)
C3 0.7180 (2) 0.04498 (8) 0.34685 (7) 0.0452 (4)
C4 0.6938 (2) 0.08372 (9) 0.29731 (8) 0.0474 (4)
H4 0.6698 0.1269 0.3028 0.057*
C5 0.7043 (2) 0.05958 (8) 0.23990 (8) 0.0462 (4)
C6 0.6823 (3) 0.10082 (9) 0.18671 (9) 0.0546 (5)
C7 0.6358 (4) 0.20504 (11) 0.15139 (9) 0.0952 (9)
H7A 0.7436 0.2027 0.1264 0.143*
H7B 0.6216 0.2478 0.1659 0.143*
H7C 0.5282 0.1933 0.1288 0.143*
C8 0.9702 (3) 0.10025 (10) 0.51525 (9) 0.0702 (6)
H8A 1.0391 0.0619 0.5225 0.105*
H8B 0.9880 0.1293 0.5478 0.105*
H8C 1.0128 0.1197 0.4790 0.105*
C9 0.7647 (3) 0.08423 (8) 0.50955 (7) 0.0461 (4)
C10 0.7157 (3) 0.20608 (8) 0.50516 (9) 0.0651 (6)
H10A 0.8413 0.2118 0.4922 0.098*
H10B 0.7102 0.2094 0.5477 0.098*
H10C 0.6386 0.2383 0.4876 0.098*
C11 0.7376 (3) −0.00497 (9) 0.23160 (8) 0.0515 (5)
H11 0.7437 −0.0216 0.1933 0.062*
C12 0.7619 (2) −0.04497 (8) 0.28033 (8) 0.0481 (5)
C13 0.7995 (3) −0.11372 (10) 0.26942 (10) 0.0621 (6)
C14 0.8615 (5) −0.21352 (10) 0.31398 (12) 0.1040 (9)
H14A 0.7605 −0.2348 0.2945 0.156*
H14B 0.8803 −0.2318 0.3527 0.156*
H14C 0.9721 −0.2184 0.2907 0.156*
C15 0.7531 (2) −0.01959 (8) 0.33725 (8) 0.0488 (5)
H15 0.7709 −0.0463 0.3698 0.059*
C16 0.6931 (4) 0.05342 (10) 0.56561 (9) 0.0764 (7)
H16A 0.5692 0.0383 0.5591 0.115*
H16B 0.6928 0.0841 0.5973 0.115*
H16C 0.7717 0.0182 0.5761 0.115*
B1 0.7131 (3) 0.07327 (9) 0.41089 (9) 0.0421 (5)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0751 (9) 0.0423 (7) 0.0400 (7) 0.0040 (6) −0.0016 (6) −0.0003 (5)
O2 0.1243 (13) 0.0555 (9) 0.0418 (8) −0.0010 (8) −0.0037 (8) 0.0037 (6)
O3 0.0700 (9) 0.0377 (6) 0.0375 (7) 0.0065 (5) −0.0026 (6) −0.0054 (5)
O4 0.1359 (14) 0.0728 (10) 0.0364 (8) 0.0053 (9) 0.0016 (8) −0.0029 (7)
O5 0.1204 (13) 0.0542 (9) 0.0610 (10) 0.0147 (8) 0.0004 (9) −0.0028 (7)
O6 0.1523 (17) 0.0612 (9) 0.0573 (10) 0.0077 (9) 0.0085 (10) −0.0174 (7)
C1 0.0513 (12) 0.0673 (13) 0.0853 (16) 0.0041 (10) 0.0048 (11) −0.0188 (11)
C2 0.0520 (11) 0.0382 (9) 0.0417 (10) 0.0004 (7) 0.0012 (8) −0.0070 (7)
C3 0.0483 (10) 0.0526 (10) 0.0349 (10) −0.0010 (8) 0.0002 (8) −0.0016 (8)
C4 0.0514 (11) 0.0490 (10) 0.0419 (10) −0.0024 (8) 0.0019 (8) −0.0032 (8)
C5 0.0492 (11) 0.0538 (11) 0.0357 (10) −0.0045 (8) 0.0019 (8) −0.0023 (8)
C6 0.0643 (13) 0.0580 (12) 0.0415 (12) −0.0046 (9) 0.0020 (9) −0.0024 (9)
C7 0.165 (3) 0.0633 (14) 0.0578 (15) 0.0008 (15) −0.0084 (15) 0.0172 (12)
C8 0.0604 (14) 0.0768 (14) 0.0736 (15) 0.0113 (10) −0.0213 (11) −0.0182 (11)
C9 0.0623 (12) 0.0421 (9) 0.0337 (10) 0.0029 (8) −0.0058 (8) −0.0074 (7)
C10 0.0740 (14) 0.0416 (10) 0.0797 (16) −0.0033 (9) −0.0017 (11) −0.0137 (10)
C11 0.0601 (12) 0.0596 (11) 0.0349 (10) −0.0051 (9) 0.0023 (8) −0.0088 (9)
C12 0.0517 (11) 0.0502 (10) 0.0424 (11) −0.0024 (8) 0.0007 (8) −0.0064 (8)
C13 0.0777 (15) 0.0574 (12) 0.0514 (13) −0.0001 (10) 0.0035 (11) −0.0059 (10)
C14 0.163 (3) 0.0530 (14) 0.096 (2) 0.0214 (15) 0.0036 (18) 0.0028 (13)
C15 0.0546 (11) 0.0509 (11) 0.0410 (10) −0.0012 (8) 0.0001 (8) −0.0019 (8)
C16 0.128 (2) 0.0618 (13) 0.0393 (12) 0.0006 (12) 0.0063 (12) 0.0024 (10)
B1 0.0470 (11) 0.0404 (10) 0.0390 (12) −0.0019 (8) −0.0001 (9) 0.0004 (9)

Geometric parameters (Å, °)

O1—B1 1.363 (2) C7—H7A 0.9600
O1—C2 1.459 (2) C7—H7B 0.9600
O2—C6 1.334 (2) C7—H7C 0.9600
O2—C7 1.442 (2) C8—C9 1.526 (3)
O3—B1 1.349 (2) C8—H8A 0.9600
O3—C9 1.4629 (19) C8—H8B 0.9600
O4—C6 1.193 (2) C8—H8C 0.9600
O5—C13 1.335 (2) C9—C16 1.506 (3)
O5—C14 1.447 (2) C10—H10A 0.9600
O6—C13 1.198 (2) C10—H10B 0.9600
C1—C2 1.514 (3) C10—H10C 0.9600
C1—H1A 0.9600 C11—C12 1.390 (2)
C1—H1B 0.9600 C11—H11 0.9300
C1—H1C 0.9600 C12—C15 1.386 (2)
C2—C10 1.513 (2) C12—C13 1.487 (3)
C2—C9 1.547 (2) C14—H14A 0.9600
C3—C4 1.389 (2) C14—H14B 0.9600
C3—C15 1.394 (2) C14—H14C 0.9600
C3—B1 1.556 (2) C15—H15 0.9300
C4—C5 1.387 (2) C16—H16A 0.9600
C4—H4 0.9300 C16—H16B 0.9600
C5—C11 1.387 (3) C16—H16C 0.9600
C5—C6 1.483 (3)
B1—O1—C2 106.12 (12) O3—C9—C16 109.10 (14)
C6—O2—C7 115.49 (16) O3—C9—C8 106.34 (14)
B1—O3—C9 106.86 (13) C16—C9—C8 110.94 (17)
C13—O5—C14 116.17 (17) O3—C9—C2 101.54 (12)
C2—C1—H1A 109.5 C16—C9—C2 115.20 (16)
C2—C1—H1B 109.5 C8—C9—C2 112.88 (15)
H1A—C1—H1B 109.5 C2—C10—H10A 109.5
C2—C1—H1C 109.5 C2—C10—H10B 109.5
H1A—C1—H1C 109.5 H10A—C10—H10B 109.5
H1B—C1—H1C 109.5 C2—C10—H10C 109.5
O1—C2—C10 108.03 (14) H10A—C10—H10C 109.5
O1—C2—C1 106.63 (14) H10B—C10—H10C 109.5
C10—C2—C1 110.76 (15) C5—C11—C12 120.31 (16)
O1—C2—C9 102.36 (12) C5—C11—H11 119.8
C10—C2—C9 114.95 (15) C12—C11—H11 119.8
C1—C2—C9 113.30 (15) C15—C12—C11 119.27 (17)
C4—C3—C15 117.82 (16) C15—C12—C13 122.17 (17)
C4—C3—B1 121.00 (16) C11—C12—C13 118.56 (17)
C15—C3—B1 121.15 (16) O6—C13—O5 123.02 (19)
C5—C4—C3 121.65 (17) O6—C13—C12 124.89 (19)
C5—C4—H4 119.2 O5—C13—C12 112.09 (17)
C3—C4—H4 119.2 O5—C14—H14A 109.5
C11—C5—C4 119.35 (16) O5—C14—H14B 109.5
C11—C5—C6 118.62 (16) H14A—C14—H14B 109.5
C4—C5—C6 122.02 (16) O5—C14—H14C 109.5
O4—C6—O2 122.50 (18) H14A—C14—H14C 109.5
O4—C6—C5 125.10 (18) H14B—C14—H14C 109.5
O2—C6—C5 112.40 (16) C12—C15—C3 121.59 (17)
O2—C7—H7A 109.5 C12—C15—H15 119.2
O2—C7—H7B 109.5 C3—C15—H15 119.2
H7A—C7—H7B 109.5 C9—C16—H16A 109.5
O2—C7—H7C 109.5 C9—C16—H16B 109.5
H7A—C7—H7C 109.5 H16A—C16—H16B 109.5
H7B—C7—H7C 109.5 C9—C16—H16C 109.5
C9—C8—H8A 109.5 H16A—C16—H16C 109.5
C9—C8—H8B 109.5 H16B—C16—H16C 109.5
H8A—C8—H8B 109.5 O3—B1—O1 113.93 (15)
C9—C8—H8C 109.5 O3—B1—C3 123.55 (16)
H8A—C8—H8C 109.5 O1—B1—C3 122.52 (16)
H8B—C8—H8C 109.5

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C16—H16C···O4i 0.96 2.53 3.381 (3) 148

Symmetry codes: (i) −x+3/2, −y, z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BT5730).

References

  1. Bruker (2005). APEX2, SAINT and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Coventry, D. N., Batsanov, A. S., Goeta, A. E. H., Judith, A. K., Marder, T. B. & Perutz, R. N. (2005). Chem. Commun. 16, 2172–2174. [DOI] [PubMed]
  3. Kikuchi, T., Takagi, J., Isou, H., Ishiyama, T. & Miyaura, N. (2008). Chem. Asian J. 3, 2082–2090. [DOI] [PubMed]
  4. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811054559/bt5730sup1.cif

e-68-0o275-sup1.cif (23.1KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811054559/bt5730Isup4.hkl

e-68-0o275-Isup4.hkl (185.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811054559/bt5730Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

RESOURCES