Abstract
In the title compound, C12H9FN2OS, the thienyl ring is disordered over two positions, with the S atom of the major component [occupancy = 87.08 (16)°] oriented towards the ortho-H atom of the benzene ring. The molecule is nearly planar, the dihedral angle between the thiophene and benzene rings being 13.0 (2)° in the major component. The azomethine C=N double bond in the molecule is of an E configuration. In the crystal, molecules are linked by pairs of N—H⋯O hydrogen bonds, forming inversion dimers.
Related literature
For the 4-chloro and 4-bromo derivatives, see: Jiang (2010a
▶,b
▶).
Experimental
Crystal data
C12H9FN2OS
M r = 248.27
Monoclinic,
a = 13.3076 (11) Å
b = 5.6015 (4) Å
c = 15.3062 (12) Å
β = 104.166 (9)°
V = 1106.27 (15) Å3
Z = 4
Mo Kα radiation
μ = 0.29 mm−1
T = 100 K
0.35 × 0.15 × 0.05 mm
Data collection
Agilent SuperNova Dual diffractometer with an Atlas detector
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.906, T max = 0.986
4609 measured reflections
2532 independent reflections
1917 reflections with I > 2σ(I)
R int = 0.037
Refinement
R[F 2 > 2σ(F 2)] = 0.043
wR(F 2) = 0.108
S = 1.06
2532 reflections
171 parameters
5 restraints
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.30 e Å−3
Δρmin = −0.28 e Å−3
Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶).
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811056121/xu5417sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811056121/xu5417Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
---|---|---|---|---|
N1—H1⋯O1i | 0.90 (2) | 1.99 (3) | 2.893 (2) | 176 (2) |
Symmetry code: (i) .
Acknowledgments
We thank the Deanship of Scientific Research and the Research Center of the College of Pharmacy, King Saud University, and the University of Malaya for supporting this study.
supplementary crystallographic information
Comment
2-Thienoylhydrazide forms a large number of Schiff base derivatives with substituted benzaldehydes; among those whose crystal structures have been reported are the 4-chloro and 4-bromo derivatives (Jiang, 2010a, 2010b). However, the 4-fluoro analog (Scheme I) is disordered in respect of the thienyl ring (Fig. 1). The azomethine double-bond in the approximately planar C12H9FN2OS molecule is of an E configuration. The thienyl ring is disordered over two positions, with the S atom of the major component (87.1 (2) %) oriented towards the ortho-H atom of the benzene ring. Two molecules are linked across a center-of-inversion by an N–H···O hydrogen bond to generate a dimer (Table 1).
Experimental
2-Thienoylhydrazide (1.42 g, 0.01 mol) and 4-fluorobenzaldehyde (1.24 g, 0.01 mol) dissolved in ethanol (8 ml) was heated for 1 h. The product was collected and recystallized from ethanol to yield the Schiff base in 90% yield, m.p. 447–448 K.
Refinement
Carbon-bound H-atoms were placed in calculated positions [C–H 0.95 Å, Uiso(H) 1.2Ueq(C)] and were included in the refinement in the riding model approximation.
The amino H-atom was located in a difference Fourier map, and was refined freely refined.
The thienyl ring is disordered over two positions in respect of four of the five atoms, with major component being 87.1 (2) %. Pairs of C–C and C–S bond distances were restrained to within 0.0 Å of each other. The temperature factors of C3' was set to those of S1 (as were these pairs: C2' to C1, C1' to C2 and S1' to C3).
Figures
Fig. 1.
Thermal ellipsoid plot (Barbour, 2001) of C12H9FN2OS at the 70% probability level; hydrogen atoms are drawn as spheres of arbitrary radius. The disorder is not shown.
Crystal data
C12H9FN2OS | F(000) = 512 |
Mr = 248.27 | Dx = 1.491 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 1715 reflections |
a = 13.3076 (11) Å | θ = 2.7–27.5° |
b = 5.6015 (4) Å | µ = 0.29 mm−1 |
c = 15.3062 (12) Å | T = 100 K |
β = 104.166 (9)° | Prism, colorless |
V = 1106.27 (15) Å3 | 0.35 × 0.15 × 0.05 mm |
Z = 4 |
Data collection
Agilent SuperNova Dual diffractometer with an Atlas detector | 2532 independent reflections |
Radiation source: SuperNova (Mo) X-ray Source | 1917 reflections with I > 2σ(I) |
Mirror | Rint = 0.037 |
Detector resolution: 10.4041 pixels mm-1 | θmax = 27.6°, θmin = 2.7° |
ω scan | h = −13→17 |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010) | k = −7→4 |
Tmin = 0.906, Tmax = 0.986 | l = −19→11 |
4609 measured reflections |
Refinement
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.043 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.108 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0425P)2 + 0.113P] where P = (Fo2 + 2Fc2)/3 |
2532 reflections | (Δ/σ)max = 0.001 |
171 parameters | Δρmax = 0.30 e Å−3 |
5 restraints | Δρmin = −0.28 e Å−3 |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
x | y | z | Uiso*/Ueq | Occ. (<1) | |
S1 | 0.72252 (5) | 0.67192 (12) | 0.49050 (4) | 0.01785 (19) | 0.8708 (16) |
S1' | 0.5631 (6) | 0.5848 (19) | 0.3160 (5) | 0.0218 (7) | 0.1292 (16) |
F1 | 1.06801 (9) | 0.4889 (2) | 0.93514 (8) | 0.0291 (3) | |
O1 | 0.49118 (10) | 0.2092 (2) | 0.40405 (9) | 0.0203 (3) | |
N1 | 0.60280 (12) | 0.2114 (3) | 0.54014 (11) | 0.0181 (4) | |
N2 | 0.68783 (12) | 0.3050 (3) | 0.59944 (11) | 0.0164 (4) | |
C1 | 0.7215 (3) | 0.8617 (10) | 0.4025 (4) | 0.0181 (7) | 0.8708 (16) |
H1A | 0.7675 | 0.9928 | 0.4055 | 0.022* | 0.8708 (16) |
C2 | 0.6467 (8) | 0.8018 (16) | 0.3276 (5) | 0.0203 (9) | 0.8708 (16) |
H2 | 0.6347 | 0.8863 | 0.2722 | 0.024* | 0.8708 (16) |
C3 | 0.5900 (3) | 0.6034 (9) | 0.3415 (3) | 0.0218 (7) | 0.8708 (16) |
H3 | 0.5354 | 0.5381 | 0.2958 | 0.026* | 0.8708 (16) |
C1' | 0.642 (6) | 0.827 (12) | 0.318 (4) | 0.0203 (9) | 0.13 |
H1' | 0.6442 | 0.9298 | 0.2691 | 0.024* | 0.1292 (16) |
C2' | 0.702 (3) | 0.842 (8) | 0.404 (3) | 0.0181 (7) | 0.13 |
H2' | 0.7500 | 0.9690 | 0.4205 | 0.022* | 0.1292 (16) |
C3' | 0.6923 (14) | 0.671 (3) | 0.4673 (13) | 0.01785 (19) | 0.13 |
H3' | 0.7302 | 0.6679 | 0.5286 | 0.021* | 0.1292 (16) |
C4 | 0.61940 (14) | 0.5099 (3) | 0.42645 (12) | 0.0166 (4) | |
C5 | 0.56736 (14) | 0.3024 (3) | 0.45575 (13) | 0.0165 (4) | |
C6 | 0.71912 (15) | 0.1929 (3) | 0.67428 (13) | 0.0169 (4) | |
H6 | 0.6836 | 0.0534 | 0.6854 | 0.020* | |
C7 | 0.80912 (14) | 0.2777 (3) | 0.74281 (12) | 0.0162 (4) | |
C8 | 0.84780 (15) | 0.1384 (3) | 0.81905 (13) | 0.0188 (4) | |
H8 | 0.8139 | −0.0068 | 0.8264 | 0.023* | |
C9 | 0.93487 (16) | 0.2074 (3) | 0.88442 (13) | 0.0227 (5) | |
H9 | 0.9613 | 0.1112 | 0.9360 | 0.027* | |
C10 | 0.98170 (15) | 0.4193 (4) | 0.87216 (13) | 0.0199 (4) | |
C11 | 0.94486 (15) | 0.5653 (3) | 0.79870 (13) | 0.0181 (4) | |
H11 | 0.9783 | 0.7121 | 0.7926 | 0.022* | |
C12 | 0.85802 (14) | 0.4930 (3) | 0.73393 (12) | 0.0166 (4) | |
H12 | 0.8316 | 0.5913 | 0.6829 | 0.020* | |
H1 | 0.5728 (17) | 0.078 (4) | 0.5544 (15) | 0.035 (7)* |
Atomic displacement parameters (Å2)
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0196 (4) | 0.0175 (3) | 0.0169 (4) | −0.0051 (3) | 0.0053 (2) | −0.0012 (2) |
S1' | 0.010 (2) | 0.0290 (13) | 0.025 (2) | −0.0022 (16) | 0.0011 (14) | 0.0011 (18) |
F1 | 0.0230 (6) | 0.0378 (7) | 0.0222 (7) | −0.0021 (6) | −0.0027 (5) | −0.0023 (6) |
O1 | 0.0173 (7) | 0.0236 (7) | 0.0197 (7) | −0.0040 (6) | 0.0037 (6) | −0.0009 (6) |
N1 | 0.0172 (8) | 0.0194 (9) | 0.0174 (9) | −0.0056 (7) | 0.0035 (7) | −0.0015 (7) |
N2 | 0.0146 (8) | 0.0165 (8) | 0.0185 (9) | −0.0005 (7) | 0.0048 (7) | −0.0025 (6) |
C1 | 0.015 (2) | 0.0156 (15) | 0.0255 (11) | −0.0038 (15) | 0.0096 (15) | 0.0012 (9) |
C2 | 0.0175 (15) | 0.022 (3) | 0.023 (2) | 0.004 (2) | 0.0069 (15) | 0.0076 (13) |
C3 | 0.010 (2) | 0.0290 (13) | 0.025 (2) | −0.0022 (16) | 0.0011 (14) | 0.0011 (18) |
C1' | 0.0175 (15) | 0.022 (3) | 0.023 (2) | 0.004 (2) | 0.0069 (15) | 0.0076 (13) |
C2' | 0.015 (2) | 0.0156 (15) | 0.0255 (11) | −0.0038 (15) | 0.0096 (15) | 0.0012 (9) |
C3' | 0.0196 (4) | 0.0175 (3) | 0.0169 (4) | −0.0051 (3) | 0.0053 (2) | −0.0012 (2) |
C4 | 0.0148 (9) | 0.0168 (9) | 0.0192 (10) | 0.0011 (8) | 0.0058 (8) | −0.0020 (8) |
C5 | 0.0151 (9) | 0.0186 (10) | 0.0169 (10) | 0.0012 (8) | 0.0062 (8) | −0.0030 (8) |
C6 | 0.0176 (10) | 0.0153 (9) | 0.0195 (10) | −0.0010 (8) | 0.0077 (8) | 0.0006 (8) |
C7 | 0.0181 (10) | 0.0168 (9) | 0.0159 (9) | 0.0017 (8) | 0.0084 (8) | −0.0005 (7) |
C8 | 0.0225 (10) | 0.0151 (9) | 0.0204 (10) | −0.0016 (8) | 0.0082 (9) | 0.0013 (8) |
C9 | 0.0280 (11) | 0.0218 (10) | 0.0174 (10) | 0.0058 (9) | 0.0036 (9) | 0.0040 (8) |
C10 | 0.0161 (9) | 0.0268 (11) | 0.0162 (10) | 0.0004 (9) | 0.0030 (8) | −0.0043 (8) |
C11 | 0.0200 (10) | 0.0166 (10) | 0.0195 (10) | −0.0013 (8) | 0.0083 (9) | −0.0014 (8) |
C12 | 0.0177 (10) | 0.0177 (9) | 0.0151 (9) | 0.0034 (8) | 0.0055 (8) | 0.0013 (8) |
Geometric parameters (Å, °)
S1—C1 | 1.714 (4) | C2'—C3' | 1.389 (11) |
S1—C4 | 1.7346 (19) | C2'—H2' | 0.9500 |
S1'—C1' | 1.713 (11) | C3'—C4 | 1.361 (10) |
S1'—C4 | 1.725 (6) | C3'—H3' | 0.9500 |
F1—C10 | 1.363 (2) | C4—C5 | 1.478 (3) |
O1—C5 | 1.238 (2) | C6—C7 | 1.465 (3) |
N1—C5 | 1.361 (2) | C6—H6 | 0.9500 |
N1—N2 | 1.370 (2) | C7—C12 | 1.392 (3) |
N1—H1 | 0.90 (2) | C7—C8 | 1.394 (3) |
N2—C6 | 1.283 (2) | C8—C9 | 1.388 (3) |
C1—C2 | 1.363 (3) | C8—H8 | 0.9500 |
C1—H1A | 0.9500 | C9—C10 | 1.374 (3) |
C2—C3 | 1.388 (5) | C9—H9 | 0.9500 |
C2—H2 | 0.9500 | C10—C11 | 1.380 (3) |
C3—C4 | 1.367 (4) | C11—C12 | 1.386 (3) |
C3—H3 | 0.9500 | C11—H11 | 0.9500 |
C1'—C2' | 1.362 (10) | C12—H12 | 0.9500 |
C1'—H1' | 0.9500 | ||
C1—S1—C4 | 91.55 (18) | C5—C4—S1' | 111.4 (3) |
C1'—S1'—C4 | 93.3 (15) | C3—C4—S1 | 109.9 (2) |
C5—N1—N2 | 121.58 (17) | C5—C4—S1 | 127.20 (14) |
C5—N1—H1 | 118.1 (14) | O1—C5—N1 | 119.21 (18) |
N2—N1—H1 | 120.0 (14) | O1—C5—C4 | 120.57 (17) |
C6—N2—N1 | 116.04 (16) | N1—C5—C4 | 120.22 (17) |
C2—C1—S1 | 111.8 (3) | N2—C6—C7 | 120.68 (17) |
C2—C1—H1A | 124.1 | N2—C6—H6 | 119.7 |
S1—C1—H1A | 124.1 | C7—C6—H6 | 119.7 |
C1—C2—C3 | 112.4 (4) | C12—C7—C8 | 118.76 (18) |
C1—C2—H2 | 123.8 | C12—C7—C6 | 122.06 (17) |
C3—C2—H2 | 123.8 | C8—C7—C6 | 119.18 (17) |
C4—C3—C2 | 114.3 (3) | C9—C8—C7 | 121.31 (18) |
C4—C3—H3 | 122.8 | C9—C8—H8 | 119.3 |
C2—C3—H3 | 122.8 | C7—C8—H8 | 119.3 |
C2'—C1'—S1' | 106 (3) | C10—C9—C8 | 117.96 (18) |
C2'—C1'—H1' | 127.0 | C10—C9—H9 | 121.0 |
S1'—C1'—H1' | 127.0 | C8—C9—H9 | 121.0 |
C1'—C2'—C3' | 120 (4) | F1—C10—C9 | 118.83 (17) |
C1'—C2'—H2' | 120.0 | F1—C10—C11 | 118.46 (17) |
C3'—C2'—H2' | 120.0 | C9—C10—C11 | 122.72 (18) |
C4—C3'—C2' | 108 (2) | C10—C11—C12 | 118.51 (18) |
C4—C3'—H3' | 125.9 | C10—C11—H11 | 120.7 |
C2'—C3'—H3' | 125.9 | C12—C11—H11 | 120.7 |
C3'—C4—C5 | 135.8 (9) | C11—C12—C7 | 120.73 (17) |
C3—C4—C5 | 122.9 (2) | C11—C12—H12 | 119.6 |
C3'—C4—S1' | 112.3 (9) | C7—C12—H12 | 119.6 |
C5—N1—N2—C6 | −174.53 (16) | N2—N1—C5—O1 | 178.84 (15) |
C4—S1—C1—C2 | −0.7 (8) | N2—N1—C5—C4 | −1.2 (3) |
S1—C1—C2—C3 | 0.2 (13) | C3'—C4—C5—O1 | 168.9 (14) |
C1—C2—C3—C4 | 0.5 (13) | C3—C4—C5—O1 | −2.7 (4) |
C4—S1'—C1'—C2' | −3(7) | S1'—C4—C5—O1 | −2.1 (4) |
S1'—C1'—C2'—C3' | 2(9) | S1—C4—C5—O1 | 176.76 (14) |
C1'—C2'—C3'—C4 | 0(7) | C3'—C4—C5—N1 | −11.1 (14) |
C2'—C3'—C4—C3 | −1(3) | C3—C4—C5—N1 | 177.3 (3) |
C2'—C3'—C4—C5 | −174 (2) | S1'—C4—C5—N1 | 177.9 (4) |
C2'—C3'—C4—S1' | −3(3) | S1—C4—C5—N1 | −3.2 (3) |
C2'—C3'—C4—S1 | 149 (7) | N1—N2—C6—C7 | −179.76 (15) |
C2—C3—C4—C3' | 4.5 (13) | N2—C6—C7—C12 | 6.3 (3) |
C2—C3—C4—C5 | 178.5 (7) | N2—C6—C7—C8 | −173.20 (17) |
C2—C3—C4—S1' | 176 (3) | C12—C7—C8—C9 | −1.6 (3) |
C2—C3—C4—S1 | −1.0 (8) | C6—C7—C8—C9 | 177.91 (17) |
C1'—S1'—C4—C3' | 4(4) | C7—C8—C9—C10 | 0.5 (3) |
C1'—S1'—C4—C3 | −5(5) | C8—C9—C10—F1 | −179.27 (16) |
C1'—S1'—C4—C5 | 177 (4) | C8—C9—C10—C11 | 0.9 (3) |
C1'—S1'—C4—S1 | −2(4) | F1—C10—C11—C12 | 179.03 (15) |
C1—S1—C4—C3' | −30 (5) | C9—C10—C11—C12 | −1.1 (3) |
C1—S1—C4—C3 | 1.0 (3) | C10—C11—C12—C7 | 0.0 (3) |
C1—S1—C4—C5 | −178.5 (3) | C8—C7—C12—C11 | 1.3 (3) |
C1—S1—C4—S1' | 0.3 (5) | C6—C7—C12—C11 | −178.15 (17) |
Hydrogen-bond geometry (Å, °)
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1i | 0.90 (2) | 1.99 (3) | 2.893 (2) | 176 (2) |
Symmetry codes: (i) −x+1, −y, −z+1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: XU5417).
References
- Agilent (2010). CrysAlis PRO Agilent Technologies, Yarnton, England.
- Barbour, L. J. (2001). J. Supramol. Chem. 1, 189–191.
- Jiang, J.-H. (2010a). Acta Cryst. E66, o922. [DOI] [PMC free article] [PubMed]
- Jiang, J.-H. (2010b). Acta Cryst. E66, o923. [DOI] [PMC free article] [PubMed]
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811056121/xu5417sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811056121/xu5417Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report