Abstract
In the title molecule, C9H11N3O2S, an intramolecular O—H⋯N hydrogen bond generates an S(6) ring motif. In the crystal, molecules are linked via pairs of N—H⋯S interactions, forming inversion dimers with R 2 2(8) ring motifs. These dimers are further linked via N—H⋯S and N—H⋯O hydrogen bonds, forming a two-dimensional network lying parallel to (100). The crystal structure is further stabilized by intermolecular π–π interactions [centroid–centroid distance = 3.7972 (9) Å].
Related literature
For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For background to thiosemicarbazones in coordination chemistry, see: Casas et al. (2000 ▶). For their biological applications, see: Maccioni et al. (2003 ▶); Ferrari et al. (2000 ▶). For related structures, see: Kargar et al. (2010a
▶,b
▶); Adabi Ardakani et al. (2012 ▶).
Experimental
Crystal data
C9H11N3O2S
M r = 225.27
Monoclinic,
a = 7.4878 (2) Å
b = 9.9880 (2) Å
c = 14.3754 (3) Å
β = 91.846 (1)°
V = 1074.55 (4) Å3
Z = 4
Mo Kα radiation
μ = 0.29 mm−1
T = 291 K
0.24 × 0.14 × 0.08 mm
Data collection
Bruker SMART APEXII CCD area-detector diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.800, T max = 0.926
10176 measured reflections
2673 independent reflections
2365 reflections with I > 2σ(I)
R int = 0.016
Refinement
R[F 2 > 2σ(F 2)] = 0.035
wR(F 2) = 0.110
S = 1.07
2673 reflections
138 parameters
H-atom parameters constrained
Δρmax = 0.31 e Å−3
Δρmin = −0.24 e Å−3
Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶).
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811056182/su2361sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811056182/su2361Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811056182/su2361Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| O1—H1⋯N1 | 0.82 | 1.97 | 2.6844 (15) | 146 |
| N2—H2⋯S1i | 0.86 | 2.61 | 3.3706 (12) | 148 |
| N3—H3A⋯S1ii | 0.86 | 2.66 | 3.2706 (12) | 129 |
| N3—H3B⋯O1iii | 0.86 | 2.11 | 2.9604 (17) | 172 |
Symmetry codes: (i)
; (ii)
; (iii)
.
Acknowledgments
AAA thanks the Islamic Azad University, Ardakan Branch (this paper was extracted from the research project). HK thanks PNU for financial support. MNT thanks Sargodha University for research facilities.
supplementary crystallographic information
Comment
Thiosemicarbazones constitute an important class of N,S donor ligands due to their propensity to react with a wide range of metals (Casas et al., 2000). Thiosemicarbazones exhibit various biological activities and have therefore attracted considerable pharmaceutical interest (Maccioni et al., 2003; Ferrari et al., 2000). We report herein on the synthesis and crystal structure of the title a hydrazone Schiff base compound.
The asymmetric unit of the title compound, Fig. 1, comprises a hydrazone Schiff base ligand. The bond lengths and angles are within the normal ranges and are comparable to those reported for related structures (Kargar et al., 2010a,b; Adabi et al., 2012). An intramolecular O—H···N hydrogen bond (Table 1) generates an S(6) ring motif (Bernstein et al., 1995).
In the crystal, pairs of intermolecular N—H···S hydrogen bonds make inversion dimers with an R22(8) ring motif. Intermolecular N—H···S and N—H···O hydrogen bonds link neighbouring molecules into a two-dimensional extended network parallel to (1 0 0). For details of the hydrogen bonding see Table 1, and Fig. 2. The crystal structure is further stabilized by an intermolecular π···π interaction [Cg1···Cg1i = 3.7972 (9)Å; (i) -x+1, -y+1, -z+2; Cg1 is the centroid of ring (C1–C6)].
Experimental
A mixture of 5-methoxysalicylalehyde (0.01 mol) and hydrazinecarbothioamide (0.01 mol) in 20 ml of ethanol was refluxed for about 2 h. On cooling, the solid separated was filtered and recrystallized from ethanol. Colourless plate-like crystals of the title compound, suitable for X-ray diffraction, were obtained by slow evaporation of a solution in ethanol.
Refinement
O- and N-bound H atoms were located in a difference Fourier map and were constrained to ride on their parent atoms: O-H = 0.82 Å, N-H = 0.86 Å, with Uiso(H) = 1.5Ueq(O) and 1.2Ueq(N). The C-bound H-atoms were included in calculated positions and treated as riding atoms: C—H = 0.93 and 0.96 Å for CH and CH3 H-atoms, respectively, with Uiso (H) = k × Ueq(C), where k = 1.5 for CH3 H-atoms, and k = 1.2 for all other H-atoms.
Figures
Fig. 1.
The molecular structure of the title molecule, showing 40% probability displacement ellipsoids and the atomic numbering. The intramolecular O-H···N hydrogen bond is drawn as a dashed line.
Fig. 2.
The crystal packing of the title compound, viewed along the a-axis, showing the two-dimensional extended network parallel to (1 0 0). The N—H···S and N—H···O, hydrogen bonds are shown as dashed lines [see Table 1 for details; only the H atoms involved in these interactions are shown].
Crystal data
| C9H11N3O2S | F(000) = 472 |
| Mr = 225.27 | Dx = 1.392 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2ybc | Cell parameters from 2750 reflections |
| a = 7.4878 (2) Å | θ = 2.4–27.5° |
| b = 9.9880 (2) Å | µ = 0.29 mm−1 |
| c = 14.3754 (3) Å | T = 291 K |
| β = 91.846 (1)° | Plate, colourless |
| V = 1074.55 (4) Å3 | 0.24 × 0.14 × 0.08 mm |
| Z = 4 |
Data collection
| Bruker SMART APEXII CCD area-detector diffractometer | 2673 independent reflections |
| Radiation source: fine-focus sealed tube | 2365 reflections with I > 2σ(I) |
| graphite | Rint = 0.016 |
| φ and ω scans | θmax = 28.4°, θmin = 2.5° |
| Absorption correction: multi-scan (SADABS; Bruker, 2005) | h = −9→9 |
| Tmin = 0.800, Tmax = 0.926 | k = −13→13 |
| 10176 measured reflections | l = −17→19 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.035 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.110 | H-atom parameters constrained |
| S = 1.07 | w = 1/[σ2(Fo2) + (0.0594P)2 + 0.2733P] where P = (Fo2 + 2Fc2)/3 |
| 2673 reflections | (Δ/σ)max = 0.001 |
| 138 parameters | Δρmax = 0.31 e Å−3 |
| 0 restraints | Δρmin = −0.24 e Å−3 |
Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| C1 | 0.26170 (16) | 0.48062 (13) | 0.97372 (9) | 0.0346 (3) | |
| C2 | 0.24057 (17) | 0.58273 (14) | 1.03826 (10) | 0.0386 (3) | |
| C3 | 0.2907 (2) | 0.71257 (15) | 1.01635 (13) | 0.0510 (4) | |
| H3 | 0.2758 | 0.7812 | 1.0591 | 0.061* | |
| C4 | 0.3626 (2) | 0.73967 (16) | 0.93147 (14) | 0.0573 (4) | |
| H4 | 0.3962 | 0.8268 | 0.9175 | 0.069* | |
| C5 | 0.3857 (2) | 0.63922 (17) | 0.86653 (12) | 0.0512 (4) | |
| C6 | 0.33436 (19) | 0.51057 (16) | 0.88716 (10) | 0.0438 (3) | |
| H6 | 0.3478 | 0.4429 | 0.8435 | 0.053* | |
| C7 | 0.4842 (3) | 0.5753 (3) | 0.71703 (14) | 0.0797 (7) | |
| H7A | 0.5574 | 0.5054 | 0.7437 | 0.120* | |
| H7B | 0.5415 | 0.6124 | 0.6641 | 0.120* | |
| H7C | 0.3701 | 0.5392 | 0.6978 | 0.120* | |
| C8 | 0.21137 (17) | 0.34293 (13) | 0.99115 (9) | 0.0365 (3) | |
| H8 | 0.2270 | 0.2798 | 0.9445 | 0.044* | |
| C9 | 0.02639 (18) | 0.11834 (12) | 1.14708 (9) | 0.0353 (3) | |
| N1 | 0.14624 (14) | 0.30443 (10) | 1.06812 (8) | 0.0349 (2) | |
| N2 | 0.10299 (16) | 0.17032 (11) | 1.07211 (8) | 0.0388 (3) | |
| H2 | 0.1255 | 0.1192 | 1.0258 | 0.047* | |
| N3 | 0.0098 (2) | 0.19397 (12) | 1.22149 (8) | 0.0507 (3) | |
| H3A | 0.0478 | 0.2752 | 1.2214 | 0.061* | |
| H3B | −0.0390 | 0.1620 | 1.2701 | 0.061* | |
| O1 | 0.17090 (17) | 0.56061 (11) | 1.12351 (8) | 0.0514 (3) | |
| H1 | 0.1484 | 0.4807 | 1.1292 | 0.077* | |
| O2 | 0.4601 (2) | 0.67718 (16) | 0.78420 (11) | 0.0777 (4) | |
| S1 | −0.04238 (6) | −0.04281 (3) | 1.14369 (3) | 0.04739 (14) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| C1 | 0.0324 (6) | 0.0336 (6) | 0.0378 (6) | −0.0011 (5) | 0.0011 (5) | 0.0040 (5) |
| C2 | 0.0356 (6) | 0.0346 (6) | 0.0455 (7) | 0.0003 (5) | 0.0019 (5) | 0.0011 (5) |
| C3 | 0.0486 (8) | 0.0323 (7) | 0.0722 (10) | −0.0006 (6) | 0.0028 (7) | −0.0008 (7) |
| C4 | 0.0489 (8) | 0.0387 (7) | 0.0844 (12) | −0.0041 (6) | 0.0022 (8) | 0.0213 (8) |
| C5 | 0.0422 (7) | 0.0543 (9) | 0.0573 (9) | −0.0021 (6) | 0.0051 (6) | 0.0232 (7) |
| C6 | 0.0430 (7) | 0.0474 (8) | 0.0411 (7) | −0.0017 (6) | 0.0048 (5) | 0.0072 (6) |
| C7 | 0.0654 (11) | 0.123 (2) | 0.0515 (10) | 0.0004 (12) | 0.0163 (9) | 0.0260 (12) |
| C8 | 0.0411 (6) | 0.0329 (6) | 0.0356 (6) | −0.0024 (5) | 0.0041 (5) | −0.0009 (5) |
| C9 | 0.0440 (6) | 0.0293 (6) | 0.0326 (6) | 0.0004 (5) | 0.0021 (5) | 0.0016 (5) |
| N1 | 0.0401 (5) | 0.0285 (5) | 0.0362 (5) | −0.0025 (4) | 0.0027 (4) | 0.0010 (4) |
| N2 | 0.0540 (6) | 0.0282 (5) | 0.0346 (5) | −0.0040 (4) | 0.0091 (5) | −0.0012 (4) |
| N3 | 0.0834 (9) | 0.0347 (6) | 0.0347 (6) | −0.0109 (6) | 0.0138 (6) | −0.0034 (5) |
| O1 | 0.0678 (7) | 0.0401 (5) | 0.0473 (6) | −0.0046 (5) | 0.0163 (5) | −0.0072 (4) |
| O2 | 0.0770 (9) | 0.0822 (10) | 0.0750 (9) | −0.0103 (7) | 0.0193 (7) | 0.0389 (8) |
| S1 | 0.0754 (3) | 0.02908 (19) | 0.0382 (2) | −0.00904 (14) | 0.01049 (17) | 0.00096 (12) |
Geometric parameters (Å, °)
| C1—C2 | 1.3912 (19) | C7—H7A | 0.9600 |
| C1—C6 | 1.4063 (18) | C7—H7B | 0.9600 |
| C1—C8 | 1.4499 (17) | C7—H7C | 0.9600 |
| C2—O1 | 1.3653 (17) | C8—N1 | 1.2824 (16) |
| C2—C3 | 1.389 (2) | C8—H8 | 0.9300 |
| C3—C4 | 1.376 (2) | C9—N3 | 1.3187 (17) |
| C3—H3 | 0.9300 | C9—N2 | 1.3415 (16) |
| C4—C5 | 1.385 (3) | C9—S1 | 1.6901 (13) |
| C4—H4 | 0.9300 | N1—N2 | 1.3797 (14) |
| C5—C6 | 1.376 (2) | N2—H2 | 0.8600 |
| C5—O2 | 1.3774 (19) | N3—H3A | 0.8600 |
| C6—H6 | 0.9300 | N3—H3B | 0.8600 |
| C7—O2 | 1.418 (3) | O1—H1 | 0.8200 |
| C2—C1—C6 | 119.32 (13) | H7A—C7—H7B | 109.5 |
| C2—C1—C8 | 122.98 (12) | O2—C7—H7C | 109.5 |
| C6—C1—C8 | 117.70 (12) | H7A—C7—H7C | 109.5 |
| O1—C2—C3 | 117.94 (13) | H7B—C7—H7C | 109.5 |
| O1—C2—C1 | 122.33 (12) | N1—C8—C1 | 122.80 (12) |
| C3—C2—C1 | 119.72 (13) | N1—C8—H8 | 118.6 |
| C4—C3—C2 | 120.06 (15) | C1—C8—H8 | 118.6 |
| C4—C3—H3 | 120.0 | N3—C9—N2 | 118.93 (12) |
| C2—C3—H3 | 120.0 | N3—C9—S1 | 122.17 (10) |
| C3—C4—C5 | 121.07 (14) | N2—C9—S1 | 118.89 (10) |
| C3—C4—H4 | 119.5 | C8—N1—N2 | 115.04 (11) |
| C5—C4—H4 | 119.5 | C9—N2—N1 | 121.08 (11) |
| C6—C5—O2 | 124.45 (17) | C9—N2—H2 | 119.5 |
| C6—C5—C4 | 119.29 (14) | N1—N2—H2 | 119.5 |
| O2—C5—C4 | 116.26 (15) | C9—N3—H3A | 120.0 |
| C5—C6—C1 | 120.53 (15) | C9—N3—H3B | 120.0 |
| C5—C6—H6 | 119.7 | H3A—N3—H3B | 120.0 |
| C1—C6—H6 | 119.7 | C2—O1—H1 | 109.5 |
| O2—C7—H7A | 109.5 | C5—O2—C7 | 116.83 (15) |
| O2—C7—H7B | 109.5 | ||
| C6—C1—C2—O1 | 179.97 (12) | C2—C1—C6—C5 | 0.6 (2) |
| C8—C1—C2—O1 | 0.2 (2) | C8—C1—C6—C5 | −179.64 (13) |
| C6—C1—C2—C3 | 0.2 (2) | C2—C1—C8—N1 | −1.2 (2) |
| C8—C1—C2—C3 | −179.54 (13) | C6—C1—C8—N1 | 179.03 (12) |
| O1—C2—C3—C4 | 179.62 (14) | C1—C8—N1—N2 | 178.93 (11) |
| C1—C2—C3—C4 | −0.6 (2) | N3—C9—N2—N1 | −7.2 (2) |
| C2—C3—C4—C5 | 0.2 (2) | S1—C9—N2—N1 | 173.92 (10) |
| C3—C4—C5—C6 | 0.6 (2) | C8—N1—N2—C9 | −177.01 (12) |
| C3—C4—C5—O2 | −179.49 (14) | C6—C5—O2—C7 | 0.0 (2) |
| O2—C5—C6—C1 | 179.10 (14) | C4—C5—O2—C7 | −179.90 (16) |
| C4—C5—C6—C1 | −1.0 (2) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| O1—H1···N1 | 0.82 | 1.97 | 2.6844 (15) | 146 |
| N2—H2···S1i | 0.86 | 2.61 | 3.3706 (12) | 148 |
| N3—H3A···S1ii | 0.86 | 2.66 | 3.2706 (12) | 129 |
| N3—H3B···O1iii | 0.86 | 2.11 | 2.9604 (17) | 172 |
Symmetry codes: (i) −x, −y, −z+2; (ii) −x, y+1/2, −z+5/2; (iii) −x, y−1/2, −z+5/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: SU2361).
References
- Adabi Ardakani, A., Kargar, H., Kia, R. & Tahir, M. N. (2012). Acta Cryst. E68, o340–o341. [DOI] [PMC free article] [PubMed]
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- Casas, J. S., Garcia-Tasende, M. S. & Sordo, J. (2000). Coord. Chem. Rev. 209, 197–261.
- Ferrari, M. B., Capacchi, S., Reffo, G., Pelosi, G., Tarasconi, P., Albertini, R., Pinelli, S. & Lunghi, P. (2000). J. Inorg. Biochem. 81, 89–97. [DOI] [PubMed]
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811056182/su2361sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811056182/su2361Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811056182/su2361Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


