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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Jan 11;68(Pt 2):o347. doi: 10.1107/S160053681105567X

2-{[(2-Methyl­prop-2-en-1-yl)­oxy]meth­yl}-6-phenyl-2,3,4,5-tetra­hydro-1,2,4-triazine-3,5-dione

Nasser R El-Brollosy a, Ali A El-Emam a, Abdulghafoor A Al-Turkistani a, Seik Weng Ng b,c,*
PMCID: PMC3275031  PMID: 22346976

Abstract

The 1,2,4-triazine ring in the title compound, C14H15N3O3, is approximately planar (r.m.s. deviation = 0.019 Å); the C atom at the 6-position deviates by 0.026 (2) Å from the mean plane whereas the C atom at the 2-position deviates by 0.166 (4) Å in the opposite direction. The triazine ring is oriented at 8.60 (13)° with respect to the phenyl ring. The imino group is hydrogen-bond donor to the exocyclic O atom at the 3-position of an adjacent mol­ecule, the hydrogen bond generating an inversion dimer.

Related literature

For the synthesis and anti­microbial activity of the title compound, see: El-Brollosy (2008).graphic file with name e-68-0o347-scheme1.jpg

Experimental

Crystal data

  • C14H15N3O3

  • M r = 273.29

  • Triclinic, Inline graphic

  • a = 4.6162 (5) Å

  • b = 11.7896 (14) Å

  • c = 12.5769 (10) Å

  • α = 81.588 (8)°

  • β = 85.836 (7)°

  • γ = 87.245 (9)°

  • V = 674.84 (12) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.10 mm−1

  • T = 100 K

  • 0.30 × 0.03 × 0.03 mm

Data collection

  • Agilent SuperNova Dual diffractometer with an Atlas detector

  • Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010) T min = 0.972, T max = 0.997

  • 9875 measured reflections

  • 3088 independent reflections

  • 1878 reflections with I > 2σ(I)

  • R int = 0.086

Refinement

  • R[F 2 > 2σ(F 2)] = 0.081

  • wR(F 2) = 0.250

  • S = 1.01

  • 3088 reflections

  • 186 parameters

  • 1 restraint

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.53 e Å−3

  • Δρmin = −0.45 e Å−3

Data collection: CrysAlis PRO (Agilent, 2010); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2010).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681105567X/xu5422sup1.cif

e-68-0o347-sup1.cif (16.7KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681105567X/xu5422Isup2.hkl

e-68-0o347-Isup2.hkl (151.5KB, hkl)

Supplementary material file. DOI: 10.1107/S160053681105567X/xu5422Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1⋯O1i 0.89 (1) 1.93 (1) 2.802 (3) 168 (4)

Symmetry code: (i) Inline graphic.

Acknowledgments

We thank the Deanship of Scientific Research and the Research Center of the College of Pharmacy, King Saud University, and the University of Malaya for supporting this study.

supplementary crystallographic information

Comment

The compound (Scheme I) was synthesized for an evaluation of its antimicrobial activity (El-Brollosy, 2008). The 1,2,4-triazine ring of is planar (r.m.s. deviation 0.019 Å); the C atom at the 6-position deviates by 0.026 (2) Å from the mean plane whereas the C atom at the 2-position deviates from the mean plane by 0.166 (4) Å in the opposite direction (Fig. 1). The amino group is hydrogen-bond donor to the exocyclic O atom at the 3-position, the hydrogen bond generating a centrosymmetric dimer (Table 1, Fig. 2).

Experimental

The compound was synthesized by using a reported method (El-Brollosy, 2008), and was recrystallized from ethanol.

Refinement

Carbon-bound H-atoms were placed in calculated positions [C–H 0.95 to 0.98 Å, Uiso(H) 1.2 to 1.5Ueq(C)] and were included in the refinement in the riding model approximation.

The imino H-atom was located in a difference Fourier map, and was refined with a distance restraint of N–H 0.88±0.01 Å; its temperature factor was refined.

Figures

Fig. 1.

Fig. 1.

Thermal ellipsoid plot (Barbour, 2001) of C14H15N3O3 at the 70% probability level; hydrogen atoms are drawn as spheres of arbitrary radius.

Fig. 2.

Fig. 2.

Dimeric hydrogen-bonded structure.

Crystal data

C14H15N3O3 Z = 2
Mr = 273.29 F(000) = 288
Triclinic, P1 Dx = 1.345 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 4.6162 (5) Å Cell parameters from 1917 reflections
b = 11.7896 (14) Å θ = 2.6–27.5°
c = 12.5769 (10) Å µ = 0.10 mm1
α = 81.588 (8)° T = 100 K
β = 85.836 (7)° Prism, colorless
γ = 87.245 (9)° 0.30 × 0.03 × 0.03 mm
V = 674.84 (12) Å3

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector 3088 independent reflections
Radiation source: SuperNova (Mo) X-ray Source 1878 reflections with I > 2σ(I)
Mirror Rint = 0.086
Detector resolution: 10.4041 pixels mm-1 θmax = 27.6°, θmin = 2.6°
ω scan h = −6→6
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010) k = −15→15
Tmin = 0.972, Tmax = 0.997 l = −16→16
9875 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.081 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.250 H atoms treated by a mixture of independent and constrained refinement
S = 1.01 w = 1/[σ2(Fo2) + (0.1384P)2] where P = (Fo2 + 2Fc2)/3
3088 reflections (Δ/σ)max = 0.001
186 parameters Δρmax = 0.53 e Å3
1 restraint Δρmin = −0.45 e Å3

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.5220 (4) 0.40726 (17) 0.61847 (14) 0.0268 (5)
O2 −0.1301 (4) 0.7060 (2) 0.55343 (15) 0.0370 (6)
O3 0.0363 (4) 0.24966 (17) 0.82369 (14) 0.0261 (5)
N1 0.1946 (5) 0.5578 (2) 0.58770 (16) 0.0224 (6)
H1 0.277 (7) 0.580 (3) 0.5224 (14) 0.062 (12)*
N2 0.1685 (5) 0.4378 (2) 0.74966 (16) 0.0219 (5)
N3 −0.0574 (4) 0.5017 (2) 0.78892 (16) 0.0216 (5)
C1 0.3099 (6) 0.4641 (2) 0.6493 (2) 0.0227 (6)
C2 −0.0396 (6) 0.6266 (3) 0.6174 (2) 0.0248 (6)
C3 −0.1586 (5) 0.5929 (2) 0.73057 (19) 0.0207 (6)
C4 −0.3984 (5) 0.6607 (2) 0.7819 (2) 0.0217 (6)
C5 −0.5471 (6) 0.7527 (2) 0.7267 (2) 0.0257 (6)
H5 −0.5003 0.7749 0.6520 0.031*
C6 −0.7664 (6) 0.8135 (3) 0.7801 (2) 0.0305 (7)
H6 −0.8691 0.8762 0.7415 0.037*
C7 −0.8330 (6) 0.7822 (3) 0.8889 (2) 0.0292 (7)
H7 −0.9804 0.8239 0.9252 0.035*
C8 −0.6862 (6) 0.6905 (3) 0.9448 (2) 0.0299 (7)
H8 −0.7345 0.6689 1.0195 0.036*
C9 −0.4675 (6) 0.6294 (3) 0.8926 (2) 0.0263 (7)
H9 −0.3655 0.5668 0.9318 0.032*
C10 0.2431 (6) 0.3324 (3) 0.8212 (2) 0.0248 (6)
H10A 0.4350 0.3013 0.7963 0.030*
H10B 0.2581 0.3506 0.8950 0.030*
C11 0.0328 (6) 0.2037 (3) 0.7240 (2) 0.0266 (7)
H11A 0.2318 0.1769 0.7022 0.032*
H11B −0.0311 0.2649 0.6670 0.032*
C12 −0.1666 (6) 0.1064 (3) 0.7350 (2) 0.0297 (7)
C13 −0.2911 (7) 0.0595 (3) 0.8283 (2) 0.0357 (8)
H13A −0.2548 0.0879 0.8928 0.043*
H13B −0.4166 −0.0025 0.8307 0.043*
C14 −0.2130 (7) 0.0672 (3) 0.6292 (2) 0.0375 (8)
H14A −0.3299 −0.0013 0.6420 0.056*
H14B −0.0245 0.0489 0.5934 0.056*
H14C −0.3148 0.1284 0.5833 0.056*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0280 (11) 0.0367 (12) 0.0136 (9) 0.0045 (9) 0.0047 (8) −0.0017 (8)
O2 0.0420 (12) 0.0492 (15) 0.0141 (10) 0.0119 (11) 0.0064 (8) 0.0055 (9)
O3 0.0328 (11) 0.0321 (12) 0.0121 (9) 0.0010 (9) 0.0050 (7) −0.0025 (8)
N1 0.0264 (12) 0.0306 (14) 0.0083 (10) −0.0017 (10) 0.0040 (9) 0.0015 (10)
N2 0.0275 (12) 0.0259 (13) 0.0108 (10) 0.0025 (10) 0.0039 (9) −0.0007 (9)
N3 0.0249 (12) 0.0287 (13) 0.0108 (10) 0.0010 (10) 0.0027 (8) −0.0042 (9)
C1 0.0241 (14) 0.0313 (16) 0.0126 (12) −0.0017 (12) 0.0007 (10) −0.0040 (11)
C2 0.0284 (14) 0.0340 (17) 0.0106 (12) 0.0002 (12) 0.0005 (10) 0.0000 (11)
C3 0.0235 (14) 0.0255 (15) 0.0122 (12) −0.0018 (11) 0.0011 (10) −0.0003 (10)
C4 0.0203 (13) 0.0283 (16) 0.0165 (12) −0.0005 (11) 0.0025 (10) −0.0058 (11)
C5 0.0323 (15) 0.0263 (15) 0.0168 (13) −0.0006 (12) 0.0022 (11) 0.0006 (11)
C6 0.0307 (16) 0.0345 (18) 0.0260 (15) 0.0010 (14) −0.0010 (12) −0.0046 (13)
C7 0.0299 (15) 0.0323 (17) 0.0266 (14) −0.0006 (13) 0.0038 (12) −0.0107 (13)
C8 0.0314 (16) 0.0422 (19) 0.0161 (13) 0.0044 (14) 0.0045 (11) −0.0086 (13)
C9 0.0257 (14) 0.0360 (17) 0.0155 (13) 0.0053 (13) 0.0019 (10) −0.0024 (12)
C10 0.0289 (14) 0.0339 (17) 0.0104 (11) 0.0030 (12) −0.0002 (10) −0.0009 (11)
C11 0.0333 (15) 0.0326 (17) 0.0128 (12) 0.0060 (13) 0.0015 (11) −0.0037 (12)
C12 0.0353 (16) 0.0298 (17) 0.0223 (14) 0.0072 (13) 0.0012 (12) −0.0024 (12)
C13 0.0461 (18) 0.0342 (18) 0.0258 (15) −0.0044 (15) 0.0058 (13) −0.0038 (13)
C14 0.0500 (19) 0.0383 (19) 0.0240 (15) −0.0034 (16) 0.0003 (13) −0.0045 (14)

Geometric parameters (Å, °)

O1—C1 1.230 (3) C6—H6 0.9500
O2—C2 1.220 (3) C7—C8 1.378 (4)
O3—C10 1.393 (3) C7—H7 0.9500
O3—C11 1.438 (3) C8—C9 1.393 (4)
N1—C1 1.362 (4) C8—H8 0.9500
N1—C2 1.383 (4) C9—H9 0.9500
N1—H1 0.888 (10) C10—H10A 0.9900
N2—N3 1.362 (3) C10—H10B 0.9900
N2—C1 1.379 (3) C11—C12 1.490 (4)
N2—C10 1.466 (3) C11—H11A 0.9900
N3—C3 1.297 (4) C11—H11B 0.9900
C2—C3 1.493 (3) C12—C13 1.325 (4)
C3—C4 1.498 (3) C12—C14 1.503 (4)
C4—C5 1.381 (4) C13—H13A 0.9500
C4—C9 1.405 (4) C13—H13B 0.9500
C5—C6 1.401 (4) C14—H14A 0.9800
C5—H5 0.9500 C14—H14B 0.9800
C6—C7 1.380 (4) C14—H14C 0.9800
C10—O3—C11 113.35 (19) C7—C8—H8 119.7
C1—N1—C2 126.5 (2) C9—C8—H8 119.7
C1—N1—H1 119 (3) C8—C9—C4 119.7 (3)
C2—N1—H1 115 (3) C8—C9—H9 120.1
N3—N2—C1 124.4 (2) C4—C9—H9 120.1
N3—N2—C10 114.3 (2) O3—C10—N2 111.8 (2)
C1—N2—C10 121.2 (2) O3—C10—H10A 109.3
C3—N3—N2 120.6 (2) N2—C10—H10A 109.3
O1—C1—N1 123.2 (2) O3—C10—H10B 109.3
O1—C1—N2 122.5 (3) N2—C10—H10B 109.3
N1—C1—N2 114.2 (2) H10A—C10—H10B 107.9
O2—C2—N1 120.4 (2) O3—C11—C12 111.1 (2)
O2—C2—C3 126.1 (3) O3—C11—H11A 109.4
N1—C2—C3 113.5 (2) C12—C11—H11A 109.4
N3—C3—C2 120.7 (2) O3—C11—H11B 109.4
N3—C3—C4 117.0 (2) C12—C11—H11B 109.4
C2—C3—C4 122.4 (3) H11A—C11—H11B 108.0
C5—C4—C9 119.2 (2) C13—C12—C11 123.4 (3)
C5—C4—C3 123.4 (2) C13—C12—C14 123.5 (3)
C9—C4—C3 117.3 (2) C11—C12—C14 113.1 (2)
C4—C5—C6 120.5 (2) C12—C13—H13A 120.0
C4—C5—H5 119.8 C12—C13—H13B 120.0
C6—C5—H5 119.8 H13A—C13—H13B 120.0
C7—C6—C5 119.9 (3) C12—C14—H14A 109.5
C7—C6—H6 120.0 C12—C14—H14B 109.5
C5—C6—H6 120.0 H14A—C14—H14B 109.5
C8—C7—C6 120.1 (3) C12—C14—H14C 109.5
C8—C7—H7 119.9 H14A—C14—H14C 109.5
C6—C7—H7 119.9 H14B—C14—H14C 109.5
C7—C8—C9 120.5 (3)
C1—N2—N3—C3 1.5 (4) C2—C3—C4—C5 6.4 (4)
C10—N2—N3—C3 −175.2 (2) N3—C3—C4—C9 8.3 (4)
C2—N1—C1—O1 −178.9 (2) C2—C3—C4—C9 −172.1 (2)
C2—N1—C1—N2 1.1 (4) C9—C4—C5—C6 −0.6 (4)
N3—N2—C1—O1 176.5 (2) C3—C4—C5—C6 −179.1 (2)
C10—N2—C1—O1 −7.1 (4) C4—C5—C6—C7 0.6 (4)
N3—N2—C1—N1 −3.5 (4) C5—C6—C7—C8 −0.6 (4)
C10—N2—C1—N1 172.9 (2) C6—C7—C8—C9 0.7 (4)
C1—N1—C2—O2 −177.2 (2) C7—C8—C9—C4 −0.7 (4)
C1—N1—C2—C3 2.8 (4) C5—C4—C9—C8 0.7 (4)
N2—N3—C3—C2 3.0 (4) C3—C4—C9—C8 179.2 (2)
N2—N3—C3—C4 −177.40 (19) C11—O3—C10—N2 68.7 (3)
O2—C2—C3—N3 175.1 (3) N3—N2—C10—O3 72.8 (2)
N1—C2—C3—N3 −4.9 (4) C1—N2—C10—O3 −104.0 (3)
O2—C2—C3—C4 −4.5 (4) C10—O3—C11—C12 173.3 (2)
N1—C2—C3—C4 175.5 (2) O3—C11—C12—C13 −8.5 (4)
N3—C3—C4—C5 −173.3 (2) O3—C11—C12—C14 171.2 (2)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N1—H1···O1i 0.89 (1) 1.93 (1) 2.802 (3) 168 (4)

Symmetry codes: (i) −x+1, −y+1, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: XU5422).

References

  1. Agilent (2010). CrysAlis PRO Agilent Technologies, Yarnton, England.
  2. Barbour, L. J. (2001). J. Supramol. Chem. 1, 189–191.
  3. El-Brollosy, N. R. (2008). Monatsh. Chem. 139, 1483–1490.
  4. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  5. Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681105567X/xu5422sup1.cif

e-68-0o347-sup1.cif (16.7KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681105567X/xu5422Isup2.hkl

e-68-0o347-Isup2.hkl (151.5KB, hkl)

Supplementary material file. DOI: 10.1107/S160053681105567X/xu5422Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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