Abstract
The asymmetric unit of the compound, C20H26N2O5·0.5C2H5OH, consists of two tetrahydropyrimidine-2,4-dione molecules and an ethanol molecule. The pyrimidine rings are nearly planar (r.m.s. deviation = 0.006 Å in one molecule and 0.009 Å in the other); the C atom at the 5-position deviates by 0.083 (3) Å [0.064 (3) Å in the second molecule] from the mean plane and the C atom at the 6-position by 0.034 (3) Å [0.082 (3) Å in the second molecule]. In each molecule, the benzene ring is nearly perpendicular to the pyrimidine ring, the dihedral angle is 88.51 (8)° in one molecule and 84.70 (8)° in the other. The amino group of each tetrahydropyrimidine-2,4-dione molecule is a hydrogen-bond donor to the exocyclic O atom at the 2-position of an adjacent molecule, the hydrogen bond generating an inversion dimer in each case. The ethanol molecule forms a hydrogen bond to the methoxy O atom of one of two independent molecules.
Related literature
For the synthesis, see: El-Brollosy et al. (2008 ▶).
Experimental
Crystal data
C20H26N2O5·0.5C2H6O
M r = 397.46
Monoclinic,
a = 14.0251 (5) Å
b = 9.4285 (3) Å
c = 30.8606 (12) Å
β = 91.580 (3)°
V = 4079.3 (3) Å3
Z = 8
Mo Kα radiation
μ = 0.09 mm−1
T = 100 K
0.30 × 0.20 × 0.05 mm
Data collection
Agilent SuperNova Dual diffractometer with an Atlas detector
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.972, T max = 0.995
41334 measured reflections
9419 independent reflections
6406 reflections with I > 2σ(I)
R int = 0.052
Refinement
R[F 2 > 2σ(F 2)] = 0.056
wR(F 2) = 0.166
S = 1.03
9419 reflections
526 parameters
3 restraints
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.61 e Å−3
Δρmin = −0.31 e Å−3
Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶).
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811055693/xu5424sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811055693/xu5424Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811055693/xu5424Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N1—H1⋯O1i | 0.88 (1) | 1.96 (1) | 2.839 (2) | 177 (2) |
| N3—H3⋯O6ii | 0.88 (1) | 1.92 (1) | 2.799 (2) | 175 (2) |
| O11—H11⋯O10 | 0.85 (1) | 2.08 (1) | 2.927 (2) | 178 (1) |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
We thank the Deanship of Scientific Research and the Research Center of the College of Pharmacy, King Saud University, and the University of Malaya for supporting this study.
supplementary crystallographic information
Comment
The compound was synthesized for an evaluation of its anti-viral activity against HIV-1 (El-Brollosy, 2008). The asymmetric unit of C20H26N2O5.0.5(C2H5OH) (Scheme I) consists of two tetrahydropyrimidine-2,4-dione molecules and an ethanol molecule. The pyrimidine rings are planar; the C atom at the 5-position deviates by 0.083 (3) Å (0.064 Å in the second molecule) from the mean plane and the C atom at the 6-position by 0.034 (3) Å (0.082 (3) Å in the second molecule) (Fig. 1). The amino group is hydrogen-bond donor to the exocyclic O atom at the 2-position, the hydrogen bond generating a centrosymmetric dimer. The ethanol molecule forms a hydrogen bond to the methoxy O atom of one of two independent molecules (Table 1, Fig. 2).
Experimental
The compound was synthesized by using a reported method (El-Brollosy, 2008), and was recrystallized from ethanol.
Refinement
Carbon-bound H-atoms were placed in calculated positions [C–H 0.95 to 0.98 Å, Uiso(H) 1.2 to 1.5Ueq(C)] and were included in the refinement in the riding model approximation.
The amino and hydroxy H-atoms were located in a difference Fourier map, and were refined with distance restraints of N–H 0.88±0.01 and O–H 0.84±0.1 Å; their temperature factors were refined.
Figures
Fig. 1.
Thermal ellipsoid plot (Barbour, 2001) of C20H26N2O5.0.5C2H5OH at the 70% probability level; hydrogen atoms are drawn as spheres of arbitrary radius.
Fig. 2.
Dimeric hydrogen-bonded structure.
Crystal data
| C20H26N2O5·0.5C2H6O | F(000) = 1704 |
| Mr = 397.46 | Dx = 1.294 Mg m−3 |
| Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2yn | Cell parameters from 8025 reflections |
| a = 14.0251 (5) Å | θ = 2.4–27.5° |
| b = 9.4285 (3) Å | µ = 0.09 mm−1 |
| c = 30.8606 (12) Å | T = 100 K |
| β = 91.580 (3)° | Prism, colorless |
| V = 4079.3 (3) Å3 | 0.30 × 0.20 × 0.05 mm |
| Z = 8 |
Data collection
| Agilent SuperNova Dual diffractometer with an Atlas detector | 9419 independent reflections |
| Radiation source: SuperNova (Mo) X-ray Source | 6406 reflections with I > 2σ(I) |
| Mirror | Rint = 0.052 |
| Detector resolution: 10.4041 pixels mm-1 | θmax = 27.6°, θmin = 2.4° |
| ω scan | h = −18→18 |
| Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010) | k = −12→12 |
| Tmin = 0.972, Tmax = 0.995 | l = −39→40 |
| 41334 measured reflections |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.056 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.166 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.02 | w = 1/[σ2(Fo2) + (0.074P)2 + 1.8464P] where P = (Fo2 + 2Fc2)/3 |
| 9419 reflections | (Δ/σ)max = 0.001 |
| 526 parameters | Δρmax = 0.61 e Å−3 |
| 3 restraints | Δρmin = −0.31 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| O1 | 0.98988 (10) | 0.46926 (14) | 0.55571 (4) | 0.0200 (3) | |
| O2 | 1.09507 (10) | 0.16211 (15) | 0.45487 (4) | 0.0235 (3) | |
| O3 | 1.30215 (10) | −0.02588 (16) | 0.74125 (4) | 0.0257 (3) | |
| O4 | 1.43731 (10) | 0.12427 (16) | 0.70964 (4) | 0.0254 (3) | |
| O5 | 0.93339 (9) | 0.20943 (14) | 0.63656 (4) | 0.0213 (3) | |
| O6 | 0.48783 (9) | 0.96225 (13) | 0.55457 (4) | 0.0191 (3) | |
| O7 | 0.59262 (10) | 0.66818 (14) | 0.45009 (4) | 0.0231 (3) | |
| O8 | 0.78053 (10) | 0.54250 (16) | 0.74248 (4) | 0.0240 (3) | |
| O9 | 0.91765 (10) | 0.68595 (16) | 0.71014 (5) | 0.0259 (3) | |
| O10 | 0.43936 (9) | 0.69818 (14) | 0.63514 (4) | 0.0200 (3) | |
| O11 | 0.47459 (11) | 0.57361 (17) | 0.72096 (5) | 0.0309 (4) | |
| H11 | 0.463 (2) | 0.608 (3) | 0.6959 (5) | 0.074 (11)* | |
| N1 | 1.04366 (11) | 0.31279 (16) | 0.50634 (5) | 0.0165 (3) | |
| H1 | 1.0329 (17) | 0.378 (2) | 0.4864 (6) | 0.038 (7)* | |
| N2 | 1.04156 (11) | 0.25128 (16) | 0.57939 (5) | 0.0154 (3) | |
| N3 | 0.54195 (11) | 0.81224 (16) | 0.50323 (5) | 0.0154 (3) | |
| H3 | 0.5312 (17) | 0.8795 (19) | 0.4838 (6) | 0.034 (7)* | |
| N4 | 0.54112 (11) | 0.74223 (16) | 0.57559 (5) | 0.0141 (3) | |
| C1 | 1.02324 (12) | 0.35184 (19) | 0.54753 (6) | 0.0154 (4) | |
| C2 | 1.08106 (13) | 0.1838 (2) | 0.49329 (6) | 0.0173 (4) | |
| C3 | 1.10081 (12) | 0.08265 (19) | 0.52809 (6) | 0.0163 (4) | |
| C4 | 1.08091 (12) | 0.11816 (19) | 0.56934 (6) | 0.0152 (4) | |
| C5 | 1.14720 (13) | −0.0542 (2) | 0.51478 (7) | 0.0195 (4) | |
| H5A | 1.1235 | −0.0805 | 0.4854 | 0.023* | |
| H5B | 1.1286 | −0.1305 | 0.5349 | 0.023* | |
| C6 | 1.25569 (14) | −0.0433 (2) | 0.51483 (7) | 0.0263 (5) | |
| H6A | 1.2826 | −0.1334 | 0.5051 | 0.039* | |
| H6B | 1.2798 | −0.0223 | 0.5442 | 0.039* | |
| H6C | 1.2744 | 0.0328 | 0.4952 | 0.039* | |
| C7 | 1.10005 (13) | 0.0217 (2) | 0.60769 (6) | 0.0168 (4) | |
| H7A | 1.1054 | −0.0771 | 0.5971 | 0.020* | |
| H7B | 1.0449 | 0.0260 | 0.6270 | 0.020* | |
| C8 | 1.19039 (13) | 0.05911 (19) | 0.63389 (6) | 0.0158 (4) | |
| C9 | 1.20206 (13) | 0.0029 (2) | 0.67599 (6) | 0.0170 (4) | |
| H9 | 1.1522 | −0.0518 | 0.6878 | 0.020* | |
| C10 | 1.28463 (13) | 0.0257 (2) | 0.70032 (6) | 0.0172 (4) | |
| C11 | 1.35853 (13) | 0.1076 (2) | 0.68285 (6) | 0.0175 (4) | |
| C12 | 1.34717 (13) | 0.1648 (2) | 0.64198 (6) | 0.0178 (4) | |
| H12 | 1.3965 | 0.2210 | 0.6303 | 0.021* | |
| C13 | 1.26320 (13) | 0.14051 (19) | 0.61763 (6) | 0.0171 (4) | |
| H13 | 1.2561 | 0.1805 | 0.5895 | 0.021* | |
| C14 | 1.23215 (15) | −0.1186 (2) | 0.75862 (7) | 0.0255 (5) | |
| H14A | 1.2532 | −0.1499 | 0.7876 | 0.038* | |
| H14B | 1.2240 | −0.2014 | 0.7397 | 0.038* | |
| H14C | 1.1713 | −0.0682 | 0.7605 | 0.038* | |
| C15 | 1.51657 (15) | 0.1951 (3) | 0.69177 (7) | 0.0372 (6) | |
| H15A | 1.5682 | 0.2020 | 0.7137 | 0.056* | |
| H15B | 1.4974 | 0.2905 | 0.6825 | 0.056* | |
| H15C | 1.5389 | 0.1416 | 0.6668 | 0.056* | |
| C16 | 1.01394 (14) | 0.2859 (2) | 0.62390 (6) | 0.0188 (4) | |
| H16A | 1.0680 | 0.2646 | 0.6442 | 0.023* | |
| H16B | 1.0003 | 0.3887 | 0.6258 | 0.023* | |
| C17 | 0.84671 (14) | 0.2553 (2) | 0.61450 (7) | 0.0217 (4) | |
| H17A | 0.8526 | 0.2426 | 0.5828 | 0.026* | |
| H17B | 0.8358 | 0.3572 | 0.6203 | 0.026* | |
| C18 | 0.76466 (15) | 0.1707 (2) | 0.62998 (7) | 0.0222 (4) | |
| H18 | 0.7453 | 0.1883 | 0.6605 | 0.027* | |
| C19 | 0.75133 (16) | 0.0224 (2) | 0.61315 (7) | 0.0266 (5) | |
| H19A | 0.7254 | −0.0494 | 0.6331 | 0.032* | |
| H19B | 0.7987 | −0.0143 | 0.5927 | 0.032* | |
| C20 | 0.68546 (15) | 0.1388 (2) | 0.59745 (7) | 0.0263 (5) | |
| H20A | 0.6193 | 0.1385 | 0.6078 | 0.032* | |
| H20B | 0.6925 | 0.1736 | 0.5674 | 0.032* | |
| C21 | 0.52168 (13) | 0.84630 (19) | 0.54485 (6) | 0.0152 (4) | |
| C22 | 0.57962 (13) | 0.68532 (19) | 0.48875 (6) | 0.0158 (4) | |
| C23 | 0.60088 (12) | 0.58061 (19) | 0.52249 (6) | 0.0150 (4) | |
| C24 | 0.58203 (12) | 0.61172 (19) | 0.56415 (6) | 0.0141 (4) | |
| C25 | 0.64704 (13) | 0.44552 (19) | 0.50735 (6) | 0.0179 (4) | |
| H25A | 0.6224 | 0.4227 | 0.4778 | 0.021* | |
| H25B | 0.6291 | 0.3668 | 0.5267 | 0.021* | |
| C26 | 0.75574 (14) | 0.4565 (2) | 0.50682 (7) | 0.0260 (5) | |
| H26A | 0.7823 | 0.3667 | 0.4967 | 0.039* | |
| H26B | 0.7806 | 0.4767 | 0.5362 | 0.039* | |
| H26C | 0.7739 | 0.5332 | 0.4873 | 0.039* | |
| C27 | 0.60529 (13) | 0.51366 (19) | 0.60141 (6) | 0.0155 (4) | |
| H27A | 0.6180 | 0.4177 | 0.5899 | 0.019* | |
| H27B | 0.5492 | 0.5071 | 0.6201 | 0.019* | |
| C28 | 0.69145 (13) | 0.56243 (19) | 0.62879 (6) | 0.0152 (4) | |
| C29 | 0.69588 (13) | 0.52546 (19) | 0.67285 (6) | 0.0160 (4) | |
| H29 | 0.6460 | 0.4709 | 0.6848 | 0.019* | |
| C30 | 0.77194 (13) | 0.5677 (2) | 0.69894 (6) | 0.0177 (4) | |
| C31 | 0.84680 (13) | 0.6468 (2) | 0.68105 (6) | 0.0179 (4) | |
| C32 | 0.84309 (13) | 0.6817 (2) | 0.63778 (6) | 0.0175 (4) | |
| H32 | 0.8937 | 0.7339 | 0.6256 | 0.021* | |
| C33 | 0.76497 (13) | 0.64037 (19) | 0.61165 (6) | 0.0162 (4) | |
| H33 | 0.7623 | 0.6660 | 0.5819 | 0.019* | |
| C34 | 0.71250 (15) | 0.4468 (2) | 0.75976 (7) | 0.0275 (5) | |
| H34A | 0.7254 | 0.4345 | 0.7909 | 0.041* | |
| H34B | 0.7172 | 0.3548 | 0.7452 | 0.041* | |
| H34C | 0.6481 | 0.4852 | 0.7551 | 0.041* | |
| C35 | 0.98999 (16) | 0.7776 (3) | 0.69457 (8) | 0.0404 (6) | |
| H35A | 1.0358 | 0.7992 | 0.7182 | 0.061* | |
| H35B | 0.9608 | 0.8658 | 0.6839 | 0.061* | |
| H35C | 1.0230 | 0.7308 | 0.6709 | 0.061* | |
| C36 | 0.51807 (13) | 0.7754 (2) | 0.62070 (6) | 0.0171 (4) | |
| H36A | 0.5742 | 0.7541 | 0.6397 | 0.021* | |
| H36B | 0.5044 | 0.8780 | 0.6231 | 0.021* | |
| C37 | 0.34872 (13) | 0.7456 (2) | 0.61695 (7) | 0.0207 (4) | |
| H37A | 0.3474 | 0.7335 | 0.5851 | 0.025* | |
| H37B | 0.3392 | 0.8473 | 0.6235 | 0.025* | |
| C38 | 0.27141 (15) | 0.6592 (2) | 0.63636 (7) | 0.0271 (5) | |
| H38 | 0.2615 | 0.6731 | 0.6680 | 0.033* | |
| C39 | 0.25401 (17) | 0.5130 (2) | 0.61916 (8) | 0.0305 (5) | |
| H39A | 0.2353 | 0.4388 | 0.6400 | 0.037* | |
| H39B | 0.2945 | 0.4794 | 0.5955 | 0.037* | |
| C40 | 0.18343 (15) | 0.6284 (2) | 0.60890 (8) | 0.0301 (5) | |
| H40A | 0.1214 | 0.6254 | 0.6235 | 0.036* | |
| H40B | 0.1807 | 0.6662 | 0.5789 | 0.036* | |
| C41 | 0.47636 (18) | 0.6798 (3) | 0.75372 (8) | 0.0349 (6) | |
| H41A | 0.4939 | 0.6350 | 0.7818 | 0.042* | |
| H41B | 0.4114 | 0.7196 | 0.7561 | 0.042* | |
| C42 | 0.5443 (2) | 0.7984 (3) | 0.74559 (9) | 0.0462 (7) | |
| H42A | 0.5424 | 0.8666 | 0.7695 | 0.069* | |
| H42B | 0.5261 | 0.8460 | 0.7184 | 0.069* | |
| H42C | 0.6091 | 0.7604 | 0.7435 | 0.069* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.0258 (7) | 0.0163 (7) | 0.0181 (7) | 0.0056 (6) | 0.0030 (6) | 0.0036 (5) |
| O2 | 0.0315 (8) | 0.0231 (7) | 0.0162 (7) | 0.0040 (6) | 0.0058 (6) | 0.0007 (6) |
| O3 | 0.0240 (7) | 0.0370 (9) | 0.0161 (8) | −0.0072 (7) | −0.0018 (6) | 0.0090 (6) |
| O4 | 0.0208 (7) | 0.0395 (9) | 0.0158 (7) | −0.0102 (7) | −0.0029 (6) | 0.0024 (6) |
| O5 | 0.0218 (7) | 0.0232 (7) | 0.0190 (7) | 0.0047 (6) | 0.0040 (6) | 0.0066 (6) |
| O6 | 0.0240 (7) | 0.0152 (7) | 0.0182 (7) | 0.0048 (6) | 0.0023 (6) | 0.0021 (5) |
| O7 | 0.0328 (8) | 0.0225 (7) | 0.0142 (7) | 0.0042 (6) | 0.0051 (6) | 0.0021 (6) |
| O8 | 0.0258 (7) | 0.0345 (8) | 0.0117 (7) | −0.0098 (7) | −0.0018 (6) | 0.0041 (6) |
| O9 | 0.0201 (7) | 0.0390 (9) | 0.0184 (8) | −0.0111 (7) | −0.0027 (6) | 0.0011 (6) |
| O10 | 0.0223 (7) | 0.0224 (7) | 0.0153 (7) | 0.0020 (6) | 0.0017 (6) | 0.0044 (6) |
| O11 | 0.0334 (9) | 0.0315 (8) | 0.0278 (9) | −0.0019 (7) | 0.0007 (7) | 0.0037 (7) |
| N1 | 0.0193 (8) | 0.0158 (8) | 0.0145 (8) | 0.0024 (7) | 0.0008 (6) | 0.0045 (6) |
| N2 | 0.0164 (7) | 0.0150 (8) | 0.0148 (8) | 0.0020 (6) | −0.0001 (6) | 0.0030 (6) |
| N3 | 0.0194 (8) | 0.0138 (8) | 0.0130 (8) | 0.0009 (7) | 0.0007 (6) | 0.0037 (6) |
| N4 | 0.0175 (7) | 0.0130 (7) | 0.0118 (8) | 0.0013 (6) | 0.0002 (6) | 0.0011 (6) |
| C1 | 0.0126 (8) | 0.0157 (9) | 0.0179 (10) | −0.0012 (7) | −0.0001 (7) | 0.0035 (7) |
| C2 | 0.0143 (9) | 0.0170 (9) | 0.0205 (10) | −0.0005 (8) | 0.0011 (8) | 0.0009 (8) |
| C3 | 0.0119 (8) | 0.0148 (9) | 0.0223 (10) | 0.0007 (7) | 0.0008 (7) | 0.0033 (7) |
| C4 | 0.0117 (8) | 0.0125 (8) | 0.0213 (10) | −0.0017 (7) | −0.0020 (7) | 0.0039 (7) |
| C5 | 0.0210 (9) | 0.0177 (9) | 0.0197 (10) | 0.0015 (8) | 0.0009 (8) | 0.0014 (8) |
| C6 | 0.0207 (10) | 0.0272 (11) | 0.0308 (12) | 0.0071 (9) | −0.0015 (9) | −0.0090 (9) |
| C7 | 0.0174 (9) | 0.0156 (9) | 0.0172 (10) | −0.0016 (8) | −0.0018 (8) | 0.0046 (7) |
| C8 | 0.0164 (9) | 0.0126 (8) | 0.0184 (10) | 0.0027 (7) | 0.0009 (7) | −0.0004 (7) |
| C9 | 0.0163 (9) | 0.0153 (9) | 0.0195 (10) | 0.0002 (8) | 0.0031 (8) | 0.0016 (7) |
| C10 | 0.0197 (9) | 0.0204 (9) | 0.0116 (9) | 0.0016 (8) | 0.0036 (7) | 0.0009 (7) |
| C11 | 0.0171 (9) | 0.0209 (9) | 0.0145 (10) | −0.0007 (8) | 0.0004 (7) | −0.0026 (8) |
| C12 | 0.0191 (9) | 0.0166 (9) | 0.0178 (10) | −0.0030 (8) | 0.0037 (8) | −0.0002 (7) |
| C13 | 0.0210 (9) | 0.0151 (9) | 0.0153 (10) | 0.0012 (8) | −0.0008 (8) | 0.0016 (7) |
| C14 | 0.0265 (11) | 0.0323 (11) | 0.0178 (11) | −0.0043 (9) | 0.0018 (8) | 0.0073 (9) |
| C15 | 0.0244 (11) | 0.0660 (17) | 0.0210 (12) | −0.0180 (12) | −0.0012 (9) | 0.0042 (11) |
| C16 | 0.0236 (10) | 0.0167 (9) | 0.0162 (10) | 0.0007 (8) | 0.0014 (8) | 0.0023 (7) |
| C17 | 0.0228 (10) | 0.0194 (9) | 0.0229 (11) | 0.0067 (8) | 0.0048 (8) | 0.0044 (8) |
| C18 | 0.0268 (10) | 0.0213 (10) | 0.0189 (11) | 0.0027 (9) | 0.0076 (8) | 0.0001 (8) |
| C19 | 0.0357 (12) | 0.0199 (10) | 0.0244 (12) | 0.0022 (9) | 0.0040 (9) | 0.0013 (9) |
| C20 | 0.0282 (11) | 0.0248 (11) | 0.0262 (12) | 0.0044 (9) | 0.0039 (9) | −0.0001 (9) |
| C21 | 0.0140 (8) | 0.0157 (9) | 0.0159 (10) | −0.0008 (7) | −0.0010 (7) | 0.0022 (7) |
| C22 | 0.0141 (8) | 0.0161 (9) | 0.0172 (10) | −0.0014 (7) | 0.0012 (7) | −0.0005 (7) |
| C23 | 0.0134 (9) | 0.0134 (8) | 0.0182 (10) | 0.0001 (7) | −0.0008 (7) | 0.0003 (7) |
| C24 | 0.0129 (8) | 0.0127 (8) | 0.0166 (10) | −0.0009 (7) | −0.0019 (7) | 0.0010 (7) |
| C25 | 0.0199 (9) | 0.0157 (9) | 0.0181 (10) | 0.0016 (8) | 0.0003 (8) | −0.0015 (7) |
| C26 | 0.0200 (10) | 0.0275 (11) | 0.0306 (12) | 0.0050 (9) | −0.0001 (9) | −0.0068 (9) |
| C27 | 0.0182 (9) | 0.0142 (8) | 0.0141 (10) | 0.0010 (7) | −0.0020 (7) | 0.0022 (7) |
| C28 | 0.0154 (9) | 0.0128 (8) | 0.0171 (10) | 0.0026 (7) | −0.0017 (7) | −0.0001 (7) |
| C29 | 0.0180 (9) | 0.0157 (9) | 0.0146 (10) | 0.0009 (8) | 0.0016 (7) | 0.0008 (7) |
| C30 | 0.0193 (9) | 0.0209 (9) | 0.0128 (9) | 0.0010 (8) | 0.0006 (7) | 0.0014 (7) |
| C31 | 0.0164 (9) | 0.0214 (9) | 0.0158 (10) | −0.0015 (8) | −0.0008 (7) | −0.0024 (8) |
| C32 | 0.0162 (9) | 0.0162 (9) | 0.0201 (10) | −0.0019 (8) | 0.0035 (8) | 0.0005 (7) |
| C33 | 0.0205 (9) | 0.0150 (9) | 0.0130 (9) | 0.0022 (8) | 0.0011 (7) | 0.0015 (7) |
| C34 | 0.0292 (11) | 0.0380 (12) | 0.0154 (11) | −0.0099 (10) | 0.0021 (9) | 0.0078 (9) |
| C35 | 0.0280 (12) | 0.0652 (17) | 0.0282 (13) | −0.0248 (12) | 0.0025 (10) | −0.0014 (12) |
| C36 | 0.0212 (9) | 0.0167 (9) | 0.0135 (10) | 0.0019 (8) | 0.0000 (8) | 0.0000 (7) |
| C37 | 0.0199 (9) | 0.0206 (10) | 0.0218 (11) | 0.0043 (8) | 0.0023 (8) | 0.0008 (8) |
| C38 | 0.0323 (12) | 0.0257 (11) | 0.0238 (12) | 0.0009 (9) | 0.0084 (9) | −0.0031 (9) |
| C39 | 0.0375 (12) | 0.0214 (10) | 0.0330 (13) | 0.0021 (10) | 0.0073 (10) | −0.0011 (9) |
| C40 | 0.0248 (11) | 0.0244 (11) | 0.0412 (14) | 0.0006 (9) | 0.0059 (10) | −0.0044 (10) |
| C41 | 0.0371 (12) | 0.0376 (13) | 0.0304 (13) | −0.0013 (11) | 0.0062 (10) | −0.0019 (10) |
| C42 | 0.0560 (17) | 0.0367 (14) | 0.0461 (17) | −0.0072 (13) | 0.0057 (13) | −0.0022 (12) |
Geometric parameters (Å, °)
| O1—C1 | 1.231 (2) | C16—H16B | 0.9900 |
| O2—C2 | 1.224 (2) | C17—C18 | 1.490 (3) |
| O3—C10 | 1.369 (2) | C17—H17A | 0.9900 |
| O3—C14 | 1.430 (2) | C17—H17B | 0.9900 |
| O4—C11 | 1.371 (2) | C18—C19 | 1.502 (3) |
| O4—C15 | 1.421 (3) | C18—C20 | 1.507 (3) |
| O5—C16 | 1.404 (2) | C18—H18 | 1.0000 |
| O5—C17 | 1.443 (2) | C19—C20 | 1.506 (3) |
| O6—C21 | 1.232 (2) | C19—H19A | 0.9900 |
| O7—C22 | 1.223 (2) | C19—H19B | 0.9900 |
| O8—C30 | 1.366 (2) | C20—H20A | 0.9900 |
| O8—C34 | 1.427 (2) | C20—H20B | 0.9900 |
| O9—C31 | 1.371 (2) | C22—C23 | 1.460 (3) |
| O9—C35 | 1.426 (3) | C23—C24 | 1.352 (3) |
| O10—C36 | 1.405 (2) | C23—C25 | 1.509 (3) |
| O10—C37 | 1.446 (2) | C24—C27 | 1.504 (2) |
| O11—C41 | 1.422 (3) | C25—C26 | 1.529 (3) |
| O11—H11 | 0.853 (10) | C25—H25A | 0.9900 |
| N1—C1 | 1.361 (2) | C25—H25B | 0.9900 |
| N1—C2 | 1.389 (2) | C26—H26A | 0.9800 |
| N1—H1 | 0.879 (10) | C26—H26B | 0.9800 |
| N2—C1 | 1.385 (2) | C26—H26C | 0.9800 |
| N2—C4 | 1.409 (2) | C27—C28 | 1.526 (2) |
| N2—C16 | 1.474 (2) | C27—H27A | 0.9900 |
| N3—C21 | 1.361 (2) | C27—H27B | 0.9900 |
| N3—C22 | 1.387 (2) | C28—C33 | 1.383 (3) |
| N3—H3 | 0.884 (10) | C28—C29 | 1.403 (3) |
| N4—C21 | 1.387 (2) | C29—C30 | 1.377 (3) |
| N4—C24 | 1.407 (2) | C29—H29 | 0.9500 |
| N4—C36 | 1.472 (2) | C30—C31 | 1.413 (3) |
| C2—C3 | 1.457 (3) | C31—C32 | 1.375 (3) |
| C3—C4 | 1.353 (3) | C32—C33 | 1.398 (3) |
| C3—C5 | 1.507 (3) | C32—H32 | 0.9500 |
| C4—C7 | 1.511 (2) | C33—H33 | 0.9500 |
| C5—C6 | 1.525 (3) | C34—H34A | 0.9800 |
| C5—H5A | 0.9900 | C34—H34B | 0.9800 |
| C5—H5B | 0.9900 | C34—H34C | 0.9800 |
| C6—H6A | 0.9800 | C35—H35A | 0.9800 |
| C6—H6B | 0.9800 | C35—H35B | 0.9800 |
| C6—H6C | 0.9800 | C35—H35C | 0.9800 |
| C7—C8 | 1.525 (2) | C36—H36A | 0.9900 |
| C7—H7A | 0.9900 | C36—H36B | 0.9900 |
| C7—H7B | 0.9900 | C37—C38 | 1.494 (3) |
| C8—C13 | 1.383 (3) | C37—H37A | 0.9900 |
| C8—C9 | 1.409 (3) | C37—H37B | 0.9900 |
| C9—C10 | 1.380 (3) | C38—C39 | 1.495 (3) |
| C9—H9 | 0.9500 | C38—C40 | 1.506 (3) |
| C10—C11 | 1.411 (3) | C38—H38 | 1.0000 |
| C11—C12 | 1.377 (3) | C39—C40 | 1.499 (3) |
| C12—C13 | 1.398 (3) | C39—H39A | 0.9900 |
| C12—H12 | 0.9500 | C39—H39B | 0.9900 |
| C13—H13 | 0.9500 | C40—H40A | 0.9900 |
| C14—H14A | 0.9800 | C40—H40B | 0.9900 |
| C14—H14B | 0.9800 | C41—C42 | 1.495 (4) |
| C14—H14C | 0.9800 | C41—H41A | 0.9900 |
| C15—H15A | 0.9800 | C41—H41B | 0.9900 |
| C15—H15B | 0.9800 | C42—H42A | 0.9800 |
| C15—H15C | 0.9800 | C42—H42B | 0.9800 |
| C16—H16A | 0.9900 | C42—H42C | 0.9800 |
| C10—O3—C14 | 117.09 (15) | C19—C20—H20B | 117.8 |
| C11—O4—C15 | 116.48 (16) | C18—C20—H20B | 117.8 |
| C16—O5—C17 | 112.87 (14) | H20A—C20—H20B | 114.9 |
| C30—O8—C34 | 115.82 (15) | O6—C21—N3 | 122.06 (17) |
| C31—O9—C35 | 116.85 (16) | O6—C21—N4 | 122.08 (17) |
| C36—O10—C37 | 114.01 (14) | N3—C21—N4 | 115.86 (16) |
| C41—O11—H11 | 112 (2) | O7—C22—N3 | 119.79 (17) |
| C1—N1—C2 | 126.77 (16) | O7—C22—C23 | 125.01 (17) |
| C1—N1—H1 | 115.4 (17) | N3—C22—C23 | 115.20 (17) |
| C2—N1—H1 | 117.8 (17) | C24—C23—C22 | 119.35 (17) |
| C1—N2—C4 | 121.31 (16) | C24—C23—C25 | 125.07 (17) |
| C1—N2—C16 | 117.50 (15) | C22—C23—C25 | 115.53 (17) |
| C4—N2—C16 | 121.12 (15) | C23—C24—N4 | 121.35 (16) |
| C21—N3—C22 | 126.78 (16) | C23—C24—C27 | 123.35 (17) |
| C21—N3—H3 | 115.9 (16) | N4—C24—C27 | 115.28 (16) |
| C22—N3—H3 | 117.3 (16) | C23—C25—C26 | 112.49 (16) |
| C21—N4—C24 | 121.41 (16) | C23—C25—H25A | 109.1 |
| C21—N4—C36 | 116.93 (15) | C26—C25—H25A | 109.1 |
| C24—N4—C36 | 121.66 (15) | C23—C25—H25B | 109.1 |
| O1—C1—N1 | 121.72 (17) | C26—C25—H25B | 109.1 |
| O1—C1—N2 | 122.30 (18) | H25A—C25—H25B | 107.8 |
| N1—C1—N2 | 115.98 (16) | C25—C26—H26A | 109.5 |
| O2—C2—N1 | 119.93 (17) | C25—C26—H26B | 109.5 |
| O2—C2—C3 | 124.93 (18) | H26A—C26—H26B | 109.5 |
| N1—C2—C3 | 115.15 (17) | C25—C26—H26C | 109.5 |
| C4—C3—C2 | 119.46 (17) | H26A—C26—H26C | 109.5 |
| C4—C3—C5 | 124.76 (17) | H26B—C26—H26C | 109.5 |
| C2—C3—C5 | 115.73 (17) | C24—C27—C28 | 112.94 (15) |
| C3—C4—N2 | 121.32 (17) | C24—C27—H27A | 109.0 |
| C3—C4—C7 | 123.46 (17) | C28—C27—H27A | 109.0 |
| N2—C4—C7 | 115.21 (16) | C24—C27—H27B | 109.0 |
| C3—C5—C6 | 112.34 (16) | C28—C27—H27B | 109.0 |
| C3—C5—H5A | 109.1 | H27A—C27—H27B | 107.8 |
| C6—C5—H5A | 109.1 | C33—C28—C29 | 119.28 (17) |
| C3—C5—H5B | 109.1 | C33—C28—C27 | 122.37 (17) |
| C6—C5—H5B | 109.1 | C29—C28—C27 | 118.35 (17) |
| H5A—C5—H5B | 107.9 | C30—C29—C28 | 120.49 (18) |
| C5—C6—H6A | 109.5 | C30—C29—H29 | 119.8 |
| C5—C6—H6B | 109.5 | C28—C29—H29 | 119.8 |
| H6A—C6—H6B | 109.5 | O8—C30—C29 | 124.77 (18) |
| C5—C6—H6C | 109.5 | O8—C30—C31 | 115.46 (16) |
| H6A—C6—H6C | 109.5 | C29—C30—C31 | 119.74 (17) |
| H6B—C6—H6C | 109.5 | O9—C31—C32 | 125.38 (18) |
| C4—C7—C8 | 113.77 (15) | O9—C31—C30 | 114.77 (17) |
| C4—C7—H7A | 108.8 | C32—C31—C30 | 119.82 (17) |
| C8—C7—H7A | 108.8 | C31—C32—C33 | 120.12 (18) |
| C4—C7—H7B | 108.8 | C31—C32—H32 | 119.9 |
| C8—C7—H7B | 108.8 | C33—C32—H32 | 119.9 |
| H7A—C7—H7B | 107.7 | C28—C33—C32 | 120.53 (18) |
| C13—C8—C9 | 118.39 (17) | C28—C33—H33 | 119.7 |
| C13—C8—C7 | 123.16 (17) | C32—C33—H33 | 119.7 |
| C9—C8—C7 | 118.39 (16) | O8—C34—H34A | 109.5 |
| C10—C9—C8 | 121.17 (18) | O8—C34—H34B | 109.5 |
| C10—C9—H9 | 119.4 | H34A—C34—H34B | 109.5 |
| C8—C9—H9 | 119.4 | O8—C34—H34C | 109.5 |
| O3—C10—C9 | 124.96 (17) | H34A—C34—H34C | 109.5 |
| O3—C10—C11 | 115.58 (16) | H34B—C34—H34C | 109.5 |
| C9—C10—C11 | 119.46 (17) | O9—C35—H35A | 109.5 |
| O4—C11—C12 | 125.36 (17) | O9—C35—H35B | 109.5 |
| O4—C11—C10 | 114.87 (17) | H35A—C35—H35B | 109.5 |
| C12—C11—C10 | 119.77 (17) | O9—C35—H35C | 109.5 |
| C11—C12—C13 | 120.17 (18) | H35A—C35—H35C | 109.5 |
| C11—C12—H12 | 119.9 | H35B—C35—H35C | 109.5 |
| C13—C12—H12 | 119.9 | O10—C36—N4 | 112.66 (15) |
| C8—C13—C12 | 121.02 (18) | O10—C36—H36A | 109.1 |
| C8—C13—H13 | 119.5 | N4—C36—H36A | 109.1 |
| C12—C13—H13 | 119.5 | O10—C36—H36B | 109.1 |
| O3—C14—H14A | 109.5 | N4—C36—H36B | 109.1 |
| O3—C14—H14B | 109.5 | H36A—C36—H36B | 107.8 |
| H14A—C14—H14B | 109.5 | O10—C37—C38 | 108.41 (16) |
| O3—C14—H14C | 109.5 | O10—C37—H37A | 110.0 |
| H14A—C14—H14C | 109.5 | C38—C37—H37A | 110.0 |
| H14B—C14—H14C | 109.5 | O10—C37—H37B | 110.0 |
| O4—C15—H15A | 109.5 | C38—C37—H37B | 110.0 |
| O4—C15—H15B | 109.5 | H37A—C37—H37B | 108.4 |
| H15A—C15—H15B | 109.5 | C39—C38—C37 | 118.25 (19) |
| O4—C15—H15C | 109.5 | C39—C38—C40 | 59.95 (14) |
| H15A—C15—H15C | 109.5 | C37—C38—C40 | 118.15 (19) |
| H15B—C15—H15C | 109.5 | C39—C38—H38 | 116.2 |
| O5—C16—N2 | 112.32 (15) | C37—C38—H38 | 116.2 |
| O5—C16—H16A | 109.1 | C40—C38—H38 | 116.2 |
| N2—C16—H16A | 109.1 | C38—C39—C40 | 60.39 (14) |
| O5—C16—H16B | 109.1 | C38—C39—H39A | 117.7 |
| N2—C16—H16B | 109.1 | C40—C39—H39A | 117.7 |
| H16A—C16—H16B | 107.9 | C38—C39—H39B | 117.7 |
| O5—C17—C18 | 109.67 (16) | C40—C39—H39B | 117.7 |
| O5—C17—H17A | 109.7 | H39A—C39—H39B | 114.9 |
| C18—C17—H17A | 109.7 | C39—C40—C38 | 59.66 (14) |
| O5—C17—H17B | 109.7 | C39—C40—H40A | 117.8 |
| C18—C17—H17B | 109.7 | C38—C40—H40A | 117.8 |
| H17A—C17—H17B | 108.2 | C39—C40—H40B | 117.8 |
| C17—C18—C19 | 118.52 (18) | C38—C40—H40B | 117.8 |
| C17—C18—C20 | 117.06 (18) | H40A—C40—H40B | 114.9 |
| C19—C18—C20 | 60.09 (14) | O11—C41—C42 | 113.9 (2) |
| C17—C18—H18 | 116.4 | O11—C41—H41A | 108.8 |
| C19—C18—H18 | 116.4 | C42—C41—H41A | 108.8 |
| C20—C18—H18 | 116.4 | O11—C41—H41B | 108.8 |
| C18—C19—C20 | 60.12 (13) | C42—C41—H41B | 108.8 |
| C18—C19—H19A | 117.8 | H41A—C41—H41B | 107.7 |
| C20—C19—H19A | 117.8 | C41—C42—H42A | 109.5 |
| C18—C19—H19B | 117.8 | C41—C42—H42B | 109.5 |
| C20—C19—H19B | 117.8 | H42A—C42—H42B | 109.5 |
| H19A—C19—H19B | 114.9 | C41—C42—H42C | 109.5 |
| C19—C20—C18 | 59.79 (13) | H42A—C42—H42C | 109.5 |
| C19—C20—H20A | 117.8 | H42B—C42—H42C | 109.5 |
| C18—C20—H20A | 117.8 | ||
| C2—N1—C1—O1 | −179.83 (17) | C22—N3—C21—O6 | −179.73 (17) |
| C2—N1—C1—N2 | −0.3 (3) | C22—N3—C21—N4 | 0.0 (3) |
| C4—N2—C1—O1 | −179.19 (16) | C24—N4—C21—O6 | −178.35 (16) |
| C16—N2—C1—O1 | 3.8 (3) | C36—N4—C21—O6 | 0.9 (3) |
| C4—N2—C1—N1 | 1.3 (2) | C24—N4—C21—N3 | 1.9 (2) |
| C16—N2—C1—N1 | −175.71 (15) | C36—N4—C21—N3 | −178.83 (15) |
| C1—N1—C2—O2 | 179.22 (17) | C21—N3—C22—O7 | 178.62 (17) |
| C1—N1—C2—C3 | −0.8 (3) | C21—N3—C22—C23 | −1.4 (3) |
| O2—C2—C3—C4 | −179.02 (18) | O7—C22—C23—C24 | −179.12 (18) |
| N1—C2—C3—C4 | 1.0 (2) | N3—C22—C23—C24 | 0.9 (2) |
| O2—C2—C3—C5 | 3.7 (3) | O7—C22—C23—C25 | 3.3 (3) |
| N1—C2—C3—C5 | −176.27 (15) | N3—C22—C23—C25 | −176.67 (15) |
| C2—C3—C4—N2 | −0.1 (3) | C22—C23—C24—N4 | 0.9 (3) |
| C5—C3—C4—N2 | 176.91 (16) | C25—C23—C24—N4 | 178.20 (16) |
| C2—C3—C4—C7 | −179.10 (16) | C22—C23—C24—C27 | −177.24 (16) |
| C5—C3—C4—C7 | −2.1 (3) | C25—C23—C24—C27 | 0.1 (3) |
| C1—N2—C4—C3 | −1.1 (3) | C21—N4—C24—C23 | −2.4 (3) |
| C16—N2—C4—C3 | 175.80 (16) | C36—N4—C24—C23 | 178.37 (16) |
| C1—N2—C4—C7 | 177.94 (15) | C21—N4—C24—C27 | 175.87 (15) |
| C16—N2—C4—C7 | −5.1 (2) | C36—N4—C24—C27 | −3.4 (2) |
| C4—C3—C5—C6 | −89.8 (2) | C24—C23—C25—C26 | −89.8 (2) |
| C2—C3—C5—C6 | 87.3 (2) | C22—C23—C25—C26 | 87.6 (2) |
| C3—C4—C7—C8 | 100.9 (2) | C23—C24—C27—C28 | 105.5 (2) |
| N2—C4—C7—C8 | −78.2 (2) | N4—C24—C27—C28 | −72.8 (2) |
| C4—C7—C8—C13 | −19.6 (3) | C24—C27—C28—C33 | −29.1 (2) |
| C4—C7—C8—C9 | 163.29 (17) | C24—C27—C28—C29 | 151.34 (17) |
| C13—C8—C9—C10 | −1.2 (3) | C33—C28—C29—C30 | 0.8 (3) |
| C7—C8—C9—C10 | 176.06 (17) | C27—C28—C29—C30 | −179.64 (17) |
| C14—O3—C10—C9 | 4.7 (3) | C34—O8—C30—C29 | 10.2 (3) |
| C14—O3—C10—C11 | −175.13 (17) | C34—O8—C30—C31 | −171.77 (17) |
| C8—C9—C10—O3 | −179.42 (18) | C28—C29—C30—O8 | 176.90 (17) |
| C8—C9—C10—C11 | 0.4 (3) | C28—C29—C30—C31 | −1.0 (3) |
| C15—O4—C11—C12 | −6.3 (3) | C35—O9—C31—C32 | 4.1 (3) |
| C15—O4—C11—C10 | 174.49 (19) | C35—O9—C31—C30 | −174.06 (19) |
| O3—C10—C11—O4 | −0.3 (3) | O8—C30—C31—O9 | 0.4 (3) |
| C9—C10—C11—O4 | 179.84 (17) | C29—C30—C31—O9 | 178.56 (17) |
| O3—C10—C11—C12 | −179.57 (17) | O8—C30—C31—C32 | −177.86 (17) |
| C9—C10—C11—C12 | 0.6 (3) | C29—C30—C31—C32 | 0.3 (3) |
| O4—C11—C12—C13 | −179.94 (18) | O9—C31—C32—C33 | −177.37 (18) |
| C10—C11—C12—C13 | −0.8 (3) | C30—C31—C32—C33 | 0.7 (3) |
| C9—C8—C13—C12 | 1.0 (3) | C29—C28—C33—C32 | 0.2 (3) |
| C7—C8—C13—C12 | −176.10 (17) | C27—C28—C33—C32 | −179.34 (17) |
| C11—C12—C13—C8 | −0.1 (3) | C31—C32—C33—C28 | −1.0 (3) |
| C17—O5—C16—N2 | −70.73 (19) | C37—O10—C36—N4 | −73.12 (19) |
| C1—N2—C16—O5 | 106.91 (18) | C21—N4—C36—O10 | 108.98 (17) |
| C4—N2—C16—O5 | −70.1 (2) | C24—N4—C36—O10 | −71.7 (2) |
| C16—O5—C17—C18 | −179.34 (16) | C36—O10—C37—C38 | −177.59 (16) |
| O5—C17—C18—C19 | −77.3 (2) | O10—C37—C38—C39 | −78.7 (2) |
| O5—C17—C18—C20 | −146.26 (17) | O10—C37—C38—C40 | −147.80 (18) |
| C17—C18—C19—C20 | −106.5 (2) | C37—C38—C39—C40 | −107.9 (2) |
| C17—C18—C20—C19 | 109.0 (2) | C37—C38—C40—C39 | 108.1 (2) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1···O1i | 0.88 (1) | 1.96 (1) | 2.839 (2) | 177 (2) |
| N3—H3···O6ii | 0.88 (1) | 1.92 (1) | 2.799 (2) | 175 (2) |
| O11—H11···O10 | 0.85 (1) | 2.08 (1) | 2.927 (2) | 178 (1) |
Symmetry codes: (i) −x+2, −y+1, −z+1; (ii) −x+1, −y+2, −z+1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: XU5424).
References
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811055693/xu5424sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811055693/xu5424Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536811055693/xu5424Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


