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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Jan 11;68(Pt 2):o349–o350. doi: 10.1107/S1600536811055693

1-[(Cyclo­propyl­meth­oxy)meth­yl]-6-(3,4-dimeth­oxy­benzyl)-5-ethyl-1,2,3,4-tetra­hydro­pyrimidine-2,4-dione ethanol hemisolvate

Nasser R El-Brollosy a, Ali A El-Emam a, Omar A Al-Deeb a, Seik Weng Ng b,c,*
PMCID: PMC3275033  PMID: 22346978

Abstract

The asymmetric unit of the compound, C20H26N2O5·0.5C2H5OH, consists of two tetra­hydro­pyrimidine-2,4-dione mol­ecules and an ethanol mol­ecule. The pyrimidine rings are nearly planar (r.m.s. deviation = 0.006 Å in one mol­ecule and 0.009 Å in the other); the C atom at the 5-position deviates by 0.083 (3) Å [0.064 (3) Å in the second mol­ecule] from the mean plane and the C atom at the 6-position by 0.034 (3) Å [0.082 (3) Å in the second mol­ecule]. In each mol­ecule, the benzene ring is nearly perpendicular to the pyrimidine ring, the dihedral angle is 88.51 (8)° in one mol­ecule and 84.70 (8)° in the other. The amino group of each tetra­hydro­pyrimidine-2,4-dione mol­ecule is a hydrogen-bond donor to the exocyclic O atom at the 2-position of an adjacent mol­ecule, the hydrogen bond generating an inversion dimer in each case. The ethanol mol­ecule forms a hydrogen bond to the meth­oxy O atom of one of two independent mol­ecules.

Related literature

For the synthesis, see: El-Brollosy et al. (2008).graphic file with name e-68-0o349-scheme1.jpg

Experimental

Crystal data

  • C20H26N2O5·0.5C2H6O

  • M r = 397.46

  • Monoclinic, Inline graphic

  • a = 14.0251 (5) Å

  • b = 9.4285 (3) Å

  • c = 30.8606 (12) Å

  • β = 91.580 (3)°

  • V = 4079.3 (3) Å3

  • Z = 8

  • Mo Kα radiation

  • μ = 0.09 mm−1

  • T = 100 K

  • 0.30 × 0.20 × 0.05 mm

Data collection

  • Agilent SuperNova Dual diffractometer with an Atlas detector

  • Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010) T min = 0.972, T max = 0.995

  • 41334 measured reflections

  • 9419 independent reflections

  • 6406 reflections with I > 2σ(I)

  • R int = 0.052

Refinement

  • R[F 2 > 2σ(F 2)] = 0.056

  • wR(F 2) = 0.166

  • S = 1.03

  • 9419 reflections

  • 526 parameters

  • 3 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.61 e Å−3

  • Δρmin = −0.31 e Å−3

Data collection: CrysAlis PRO (Agilent, 2010); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2010).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811055693/xu5424sup1.cif

e-68-0o349-sup1.cif (34.1KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811055693/xu5424Isup2.hkl

e-68-0o349-Isup2.hkl (460.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811055693/xu5424Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1⋯O1i 0.88 (1) 1.96 (1) 2.839 (2) 177 (2)
N3—H3⋯O6ii 0.88 (1) 1.92 (1) 2.799 (2) 175 (2)
O11—H11⋯O10 0.85 (1) 2.08 (1) 2.927 (2) 178 (1)

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

We thank the Deanship of Scientific Research and the Research Center of the College of Pharmacy, King Saud University, and the University of Malaya for supporting this study.

supplementary crystallographic information

Comment

The compound was synthesized for an evaluation of its anti-viral activity against HIV-1 (El-Brollosy, 2008). The asymmetric unit of C20H26N2O5.0.5(C2H5OH) (Scheme I) consists of two tetrahydropyrimidine-2,4-dione molecules and an ethanol molecule. The pyrimidine rings are planar; the C atom at the 5-position deviates by 0.083 (3) Å (0.064 Å in the second molecule) from the mean plane and the C atom at the 6-position by 0.034 (3) Å (0.082 (3) Å in the second molecule) (Fig. 1). The amino group is hydrogen-bond donor to the exocyclic O atom at the 2-position, the hydrogen bond generating a centrosymmetric dimer. The ethanol molecule forms a hydrogen bond to the methoxy O atom of one of two independent molecules (Table 1, Fig. 2).

Experimental

The compound was synthesized by using a reported method (El-Brollosy, 2008), and was recrystallized from ethanol.

Refinement

Carbon-bound H-atoms were placed in calculated positions [C–H 0.95 to 0.98 Å, Uiso(H) 1.2 to 1.5Ueq(C)] and were included in the refinement in the riding model approximation.

The amino and hydroxy H-atoms were located in a difference Fourier map, and were refined with distance restraints of N–H 0.88±0.01 and O–H 0.84±0.1 Å; their temperature factors were refined.

Figures

Fig. 1.

Fig. 1.

Thermal ellipsoid plot (Barbour, 2001) of C20H26N2O5.0.5C2H5OH at the 70% probability level; hydrogen atoms are drawn as spheres of arbitrary radius.

Fig. 2.

Fig. 2.

Dimeric hydrogen-bonded structure.

Crystal data

C20H26N2O5·0.5C2H6O F(000) = 1704
Mr = 397.46 Dx = 1.294 Mg m3
Monoclinic, P21/n Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2yn Cell parameters from 8025 reflections
a = 14.0251 (5) Å θ = 2.4–27.5°
b = 9.4285 (3) Å µ = 0.09 mm1
c = 30.8606 (12) Å T = 100 K
β = 91.580 (3)° Prism, colorless
V = 4079.3 (3) Å3 0.30 × 0.20 × 0.05 mm
Z = 8

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector 9419 independent reflections
Radiation source: SuperNova (Mo) X-ray Source 6406 reflections with I > 2σ(I)
Mirror Rint = 0.052
Detector resolution: 10.4041 pixels mm-1 θmax = 27.6°, θmin = 2.4°
ω scan h = −18→18
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010) k = −12→12
Tmin = 0.972, Tmax = 0.995 l = −39→40
41334 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.056 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.166 H atoms treated by a mixture of independent and constrained refinement
S = 1.02 w = 1/[σ2(Fo2) + (0.074P)2 + 1.8464P] where P = (Fo2 + 2Fc2)/3
9419 reflections (Δ/σ)max = 0.001
526 parameters Δρmax = 0.61 e Å3
3 restraints Δρmin = −0.31 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.98988 (10) 0.46926 (14) 0.55571 (4) 0.0200 (3)
O2 1.09507 (10) 0.16211 (15) 0.45487 (4) 0.0235 (3)
O3 1.30215 (10) −0.02588 (16) 0.74125 (4) 0.0257 (3)
O4 1.43731 (10) 0.12427 (16) 0.70964 (4) 0.0254 (3)
O5 0.93339 (9) 0.20943 (14) 0.63656 (4) 0.0213 (3)
O6 0.48783 (9) 0.96225 (13) 0.55457 (4) 0.0191 (3)
O7 0.59262 (10) 0.66818 (14) 0.45009 (4) 0.0231 (3)
O8 0.78053 (10) 0.54250 (16) 0.74248 (4) 0.0240 (3)
O9 0.91765 (10) 0.68595 (16) 0.71014 (5) 0.0259 (3)
O10 0.43936 (9) 0.69818 (14) 0.63514 (4) 0.0200 (3)
O11 0.47459 (11) 0.57361 (17) 0.72096 (5) 0.0309 (4)
H11 0.463 (2) 0.608 (3) 0.6959 (5) 0.074 (11)*
N1 1.04366 (11) 0.31279 (16) 0.50634 (5) 0.0165 (3)
H1 1.0329 (17) 0.378 (2) 0.4864 (6) 0.038 (7)*
N2 1.04156 (11) 0.25128 (16) 0.57939 (5) 0.0154 (3)
N3 0.54195 (11) 0.81224 (16) 0.50323 (5) 0.0154 (3)
H3 0.5312 (17) 0.8795 (19) 0.4838 (6) 0.034 (7)*
N4 0.54112 (11) 0.74223 (16) 0.57559 (5) 0.0141 (3)
C1 1.02324 (12) 0.35184 (19) 0.54753 (6) 0.0154 (4)
C2 1.08106 (13) 0.1838 (2) 0.49329 (6) 0.0173 (4)
C3 1.10081 (12) 0.08265 (19) 0.52809 (6) 0.0163 (4)
C4 1.08091 (12) 0.11816 (19) 0.56934 (6) 0.0152 (4)
C5 1.14720 (13) −0.0542 (2) 0.51478 (7) 0.0195 (4)
H5A 1.1235 −0.0805 0.4854 0.023*
H5B 1.1286 −0.1305 0.5349 0.023*
C6 1.25569 (14) −0.0433 (2) 0.51483 (7) 0.0263 (5)
H6A 1.2826 −0.1334 0.5051 0.039*
H6B 1.2798 −0.0223 0.5442 0.039*
H6C 1.2744 0.0328 0.4952 0.039*
C7 1.10005 (13) 0.0217 (2) 0.60769 (6) 0.0168 (4)
H7A 1.1054 −0.0771 0.5971 0.020*
H7B 1.0449 0.0260 0.6270 0.020*
C8 1.19039 (13) 0.05911 (19) 0.63389 (6) 0.0158 (4)
C9 1.20206 (13) 0.0029 (2) 0.67599 (6) 0.0170 (4)
H9 1.1522 −0.0518 0.6878 0.020*
C10 1.28463 (13) 0.0257 (2) 0.70032 (6) 0.0172 (4)
C11 1.35853 (13) 0.1076 (2) 0.68285 (6) 0.0175 (4)
C12 1.34717 (13) 0.1648 (2) 0.64198 (6) 0.0178 (4)
H12 1.3965 0.2210 0.6303 0.021*
C13 1.26320 (13) 0.14051 (19) 0.61763 (6) 0.0171 (4)
H13 1.2561 0.1805 0.5895 0.021*
C14 1.23215 (15) −0.1186 (2) 0.75862 (7) 0.0255 (5)
H14A 1.2532 −0.1499 0.7876 0.038*
H14B 1.2240 −0.2014 0.7397 0.038*
H14C 1.1713 −0.0682 0.7605 0.038*
C15 1.51657 (15) 0.1951 (3) 0.69177 (7) 0.0372 (6)
H15A 1.5682 0.2020 0.7137 0.056*
H15B 1.4974 0.2905 0.6825 0.056*
H15C 1.5389 0.1416 0.6668 0.056*
C16 1.01394 (14) 0.2859 (2) 0.62390 (6) 0.0188 (4)
H16A 1.0680 0.2646 0.6442 0.023*
H16B 1.0003 0.3887 0.6258 0.023*
C17 0.84671 (14) 0.2553 (2) 0.61450 (7) 0.0217 (4)
H17A 0.8526 0.2426 0.5828 0.026*
H17B 0.8358 0.3572 0.6203 0.026*
C18 0.76466 (15) 0.1707 (2) 0.62998 (7) 0.0222 (4)
H18 0.7453 0.1883 0.6605 0.027*
C19 0.75133 (16) 0.0224 (2) 0.61315 (7) 0.0266 (5)
H19A 0.7254 −0.0494 0.6331 0.032*
H19B 0.7987 −0.0143 0.5927 0.032*
C20 0.68546 (15) 0.1388 (2) 0.59745 (7) 0.0263 (5)
H20A 0.6193 0.1385 0.6078 0.032*
H20B 0.6925 0.1736 0.5674 0.032*
C21 0.52168 (13) 0.84630 (19) 0.54485 (6) 0.0152 (4)
C22 0.57962 (13) 0.68532 (19) 0.48875 (6) 0.0158 (4)
C23 0.60088 (12) 0.58061 (19) 0.52249 (6) 0.0150 (4)
C24 0.58203 (12) 0.61172 (19) 0.56415 (6) 0.0141 (4)
C25 0.64704 (13) 0.44552 (19) 0.50735 (6) 0.0179 (4)
H25A 0.6224 0.4227 0.4778 0.021*
H25B 0.6291 0.3668 0.5267 0.021*
C26 0.75574 (14) 0.4565 (2) 0.50682 (7) 0.0260 (5)
H26A 0.7823 0.3667 0.4967 0.039*
H26B 0.7806 0.4767 0.5362 0.039*
H26C 0.7739 0.5332 0.4873 0.039*
C27 0.60529 (13) 0.51366 (19) 0.60141 (6) 0.0155 (4)
H27A 0.6180 0.4177 0.5899 0.019*
H27B 0.5492 0.5071 0.6201 0.019*
C28 0.69145 (13) 0.56243 (19) 0.62879 (6) 0.0152 (4)
C29 0.69588 (13) 0.52546 (19) 0.67285 (6) 0.0160 (4)
H29 0.6460 0.4709 0.6848 0.019*
C30 0.77194 (13) 0.5677 (2) 0.69894 (6) 0.0177 (4)
C31 0.84680 (13) 0.6468 (2) 0.68105 (6) 0.0179 (4)
C32 0.84309 (13) 0.6817 (2) 0.63778 (6) 0.0175 (4)
H32 0.8937 0.7339 0.6256 0.021*
C33 0.76497 (13) 0.64037 (19) 0.61165 (6) 0.0162 (4)
H33 0.7623 0.6660 0.5819 0.019*
C34 0.71250 (15) 0.4468 (2) 0.75976 (7) 0.0275 (5)
H34A 0.7254 0.4345 0.7909 0.041*
H34B 0.7172 0.3548 0.7452 0.041*
H34C 0.6481 0.4852 0.7551 0.041*
C35 0.98999 (16) 0.7776 (3) 0.69457 (8) 0.0404 (6)
H35A 1.0358 0.7992 0.7182 0.061*
H35B 0.9608 0.8658 0.6839 0.061*
H35C 1.0230 0.7308 0.6709 0.061*
C36 0.51807 (13) 0.7754 (2) 0.62070 (6) 0.0171 (4)
H36A 0.5742 0.7541 0.6397 0.021*
H36B 0.5044 0.8780 0.6231 0.021*
C37 0.34872 (13) 0.7456 (2) 0.61695 (7) 0.0207 (4)
H37A 0.3474 0.7335 0.5851 0.025*
H37B 0.3392 0.8473 0.6235 0.025*
C38 0.27141 (15) 0.6592 (2) 0.63636 (7) 0.0271 (5)
H38 0.2615 0.6731 0.6680 0.033*
C39 0.25401 (17) 0.5130 (2) 0.61916 (8) 0.0305 (5)
H39A 0.2353 0.4388 0.6400 0.037*
H39B 0.2945 0.4794 0.5955 0.037*
C40 0.18343 (15) 0.6284 (2) 0.60890 (8) 0.0301 (5)
H40A 0.1214 0.6254 0.6235 0.036*
H40B 0.1807 0.6662 0.5789 0.036*
C41 0.47636 (18) 0.6798 (3) 0.75372 (8) 0.0349 (6)
H41A 0.4939 0.6350 0.7818 0.042*
H41B 0.4114 0.7196 0.7561 0.042*
C42 0.5443 (2) 0.7984 (3) 0.74559 (9) 0.0462 (7)
H42A 0.5424 0.8666 0.7695 0.069*
H42B 0.5261 0.8460 0.7184 0.069*
H42C 0.6091 0.7604 0.7435 0.069*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0258 (7) 0.0163 (7) 0.0181 (7) 0.0056 (6) 0.0030 (6) 0.0036 (5)
O2 0.0315 (8) 0.0231 (7) 0.0162 (7) 0.0040 (6) 0.0058 (6) 0.0007 (6)
O3 0.0240 (7) 0.0370 (9) 0.0161 (8) −0.0072 (7) −0.0018 (6) 0.0090 (6)
O4 0.0208 (7) 0.0395 (9) 0.0158 (7) −0.0102 (7) −0.0029 (6) 0.0024 (6)
O5 0.0218 (7) 0.0232 (7) 0.0190 (7) 0.0047 (6) 0.0040 (6) 0.0066 (6)
O6 0.0240 (7) 0.0152 (7) 0.0182 (7) 0.0048 (6) 0.0023 (6) 0.0021 (5)
O7 0.0328 (8) 0.0225 (7) 0.0142 (7) 0.0042 (6) 0.0051 (6) 0.0021 (6)
O8 0.0258 (7) 0.0345 (8) 0.0117 (7) −0.0098 (7) −0.0018 (6) 0.0041 (6)
O9 0.0201 (7) 0.0390 (9) 0.0184 (8) −0.0111 (7) −0.0027 (6) 0.0011 (6)
O10 0.0223 (7) 0.0224 (7) 0.0153 (7) 0.0020 (6) 0.0017 (6) 0.0044 (6)
O11 0.0334 (9) 0.0315 (8) 0.0278 (9) −0.0019 (7) 0.0007 (7) 0.0037 (7)
N1 0.0193 (8) 0.0158 (8) 0.0145 (8) 0.0024 (7) 0.0008 (6) 0.0045 (6)
N2 0.0164 (7) 0.0150 (8) 0.0148 (8) 0.0020 (6) −0.0001 (6) 0.0030 (6)
N3 0.0194 (8) 0.0138 (8) 0.0130 (8) 0.0009 (7) 0.0007 (6) 0.0037 (6)
N4 0.0175 (7) 0.0130 (7) 0.0118 (8) 0.0013 (6) 0.0002 (6) 0.0011 (6)
C1 0.0126 (8) 0.0157 (9) 0.0179 (10) −0.0012 (7) −0.0001 (7) 0.0035 (7)
C2 0.0143 (9) 0.0170 (9) 0.0205 (10) −0.0005 (8) 0.0011 (8) 0.0009 (8)
C3 0.0119 (8) 0.0148 (9) 0.0223 (10) 0.0007 (7) 0.0008 (7) 0.0033 (7)
C4 0.0117 (8) 0.0125 (8) 0.0213 (10) −0.0017 (7) −0.0020 (7) 0.0039 (7)
C5 0.0210 (9) 0.0177 (9) 0.0197 (10) 0.0015 (8) 0.0009 (8) 0.0014 (8)
C6 0.0207 (10) 0.0272 (11) 0.0308 (12) 0.0071 (9) −0.0015 (9) −0.0090 (9)
C7 0.0174 (9) 0.0156 (9) 0.0172 (10) −0.0016 (8) −0.0018 (8) 0.0046 (7)
C8 0.0164 (9) 0.0126 (8) 0.0184 (10) 0.0027 (7) 0.0009 (7) −0.0004 (7)
C9 0.0163 (9) 0.0153 (9) 0.0195 (10) 0.0002 (8) 0.0031 (8) 0.0016 (7)
C10 0.0197 (9) 0.0204 (9) 0.0116 (9) 0.0016 (8) 0.0036 (7) 0.0009 (7)
C11 0.0171 (9) 0.0209 (9) 0.0145 (10) −0.0007 (8) 0.0004 (7) −0.0026 (8)
C12 0.0191 (9) 0.0166 (9) 0.0178 (10) −0.0030 (8) 0.0037 (8) −0.0002 (7)
C13 0.0210 (9) 0.0151 (9) 0.0153 (10) 0.0012 (8) −0.0008 (8) 0.0016 (7)
C14 0.0265 (11) 0.0323 (11) 0.0178 (11) −0.0043 (9) 0.0018 (8) 0.0073 (9)
C15 0.0244 (11) 0.0660 (17) 0.0210 (12) −0.0180 (12) −0.0012 (9) 0.0042 (11)
C16 0.0236 (10) 0.0167 (9) 0.0162 (10) 0.0007 (8) 0.0014 (8) 0.0023 (7)
C17 0.0228 (10) 0.0194 (9) 0.0229 (11) 0.0067 (8) 0.0048 (8) 0.0044 (8)
C18 0.0268 (10) 0.0213 (10) 0.0189 (11) 0.0027 (9) 0.0076 (8) 0.0001 (8)
C19 0.0357 (12) 0.0199 (10) 0.0244 (12) 0.0022 (9) 0.0040 (9) 0.0013 (9)
C20 0.0282 (11) 0.0248 (11) 0.0262 (12) 0.0044 (9) 0.0039 (9) −0.0001 (9)
C21 0.0140 (8) 0.0157 (9) 0.0159 (10) −0.0008 (7) −0.0010 (7) 0.0022 (7)
C22 0.0141 (8) 0.0161 (9) 0.0172 (10) −0.0014 (7) 0.0012 (7) −0.0005 (7)
C23 0.0134 (9) 0.0134 (8) 0.0182 (10) 0.0001 (7) −0.0008 (7) 0.0003 (7)
C24 0.0129 (8) 0.0127 (8) 0.0166 (10) −0.0009 (7) −0.0019 (7) 0.0010 (7)
C25 0.0199 (9) 0.0157 (9) 0.0181 (10) 0.0016 (8) 0.0003 (8) −0.0015 (7)
C26 0.0200 (10) 0.0275 (11) 0.0306 (12) 0.0050 (9) −0.0001 (9) −0.0068 (9)
C27 0.0182 (9) 0.0142 (8) 0.0141 (10) 0.0010 (7) −0.0020 (7) 0.0022 (7)
C28 0.0154 (9) 0.0128 (8) 0.0171 (10) 0.0026 (7) −0.0017 (7) −0.0001 (7)
C29 0.0180 (9) 0.0157 (9) 0.0146 (10) 0.0009 (8) 0.0016 (7) 0.0008 (7)
C30 0.0193 (9) 0.0209 (9) 0.0128 (9) 0.0010 (8) 0.0006 (7) 0.0014 (7)
C31 0.0164 (9) 0.0214 (9) 0.0158 (10) −0.0015 (8) −0.0008 (7) −0.0024 (8)
C32 0.0162 (9) 0.0162 (9) 0.0201 (10) −0.0019 (8) 0.0035 (8) 0.0005 (7)
C33 0.0205 (9) 0.0150 (9) 0.0130 (9) 0.0022 (8) 0.0011 (7) 0.0015 (7)
C34 0.0292 (11) 0.0380 (12) 0.0154 (11) −0.0099 (10) 0.0021 (9) 0.0078 (9)
C35 0.0280 (12) 0.0652 (17) 0.0282 (13) −0.0248 (12) 0.0025 (10) −0.0014 (12)
C36 0.0212 (9) 0.0167 (9) 0.0135 (10) 0.0019 (8) 0.0000 (8) 0.0000 (7)
C37 0.0199 (9) 0.0206 (10) 0.0218 (11) 0.0043 (8) 0.0023 (8) 0.0008 (8)
C38 0.0323 (12) 0.0257 (11) 0.0238 (12) 0.0009 (9) 0.0084 (9) −0.0031 (9)
C39 0.0375 (12) 0.0214 (10) 0.0330 (13) 0.0021 (10) 0.0073 (10) −0.0011 (9)
C40 0.0248 (11) 0.0244 (11) 0.0412 (14) 0.0006 (9) 0.0059 (10) −0.0044 (10)
C41 0.0371 (12) 0.0376 (13) 0.0304 (13) −0.0013 (11) 0.0062 (10) −0.0019 (10)
C42 0.0560 (17) 0.0367 (14) 0.0461 (17) −0.0072 (13) 0.0057 (13) −0.0022 (12)

Geometric parameters (Å, °)

O1—C1 1.231 (2) C16—H16B 0.9900
O2—C2 1.224 (2) C17—C18 1.490 (3)
O3—C10 1.369 (2) C17—H17A 0.9900
O3—C14 1.430 (2) C17—H17B 0.9900
O4—C11 1.371 (2) C18—C19 1.502 (3)
O4—C15 1.421 (3) C18—C20 1.507 (3)
O5—C16 1.404 (2) C18—H18 1.0000
O5—C17 1.443 (2) C19—C20 1.506 (3)
O6—C21 1.232 (2) C19—H19A 0.9900
O7—C22 1.223 (2) C19—H19B 0.9900
O8—C30 1.366 (2) C20—H20A 0.9900
O8—C34 1.427 (2) C20—H20B 0.9900
O9—C31 1.371 (2) C22—C23 1.460 (3)
O9—C35 1.426 (3) C23—C24 1.352 (3)
O10—C36 1.405 (2) C23—C25 1.509 (3)
O10—C37 1.446 (2) C24—C27 1.504 (2)
O11—C41 1.422 (3) C25—C26 1.529 (3)
O11—H11 0.853 (10) C25—H25A 0.9900
N1—C1 1.361 (2) C25—H25B 0.9900
N1—C2 1.389 (2) C26—H26A 0.9800
N1—H1 0.879 (10) C26—H26B 0.9800
N2—C1 1.385 (2) C26—H26C 0.9800
N2—C4 1.409 (2) C27—C28 1.526 (2)
N2—C16 1.474 (2) C27—H27A 0.9900
N3—C21 1.361 (2) C27—H27B 0.9900
N3—C22 1.387 (2) C28—C33 1.383 (3)
N3—H3 0.884 (10) C28—C29 1.403 (3)
N4—C21 1.387 (2) C29—C30 1.377 (3)
N4—C24 1.407 (2) C29—H29 0.9500
N4—C36 1.472 (2) C30—C31 1.413 (3)
C2—C3 1.457 (3) C31—C32 1.375 (3)
C3—C4 1.353 (3) C32—C33 1.398 (3)
C3—C5 1.507 (3) C32—H32 0.9500
C4—C7 1.511 (2) C33—H33 0.9500
C5—C6 1.525 (3) C34—H34A 0.9800
C5—H5A 0.9900 C34—H34B 0.9800
C5—H5B 0.9900 C34—H34C 0.9800
C6—H6A 0.9800 C35—H35A 0.9800
C6—H6B 0.9800 C35—H35B 0.9800
C6—H6C 0.9800 C35—H35C 0.9800
C7—C8 1.525 (2) C36—H36A 0.9900
C7—H7A 0.9900 C36—H36B 0.9900
C7—H7B 0.9900 C37—C38 1.494 (3)
C8—C13 1.383 (3) C37—H37A 0.9900
C8—C9 1.409 (3) C37—H37B 0.9900
C9—C10 1.380 (3) C38—C39 1.495 (3)
C9—H9 0.9500 C38—C40 1.506 (3)
C10—C11 1.411 (3) C38—H38 1.0000
C11—C12 1.377 (3) C39—C40 1.499 (3)
C12—C13 1.398 (3) C39—H39A 0.9900
C12—H12 0.9500 C39—H39B 0.9900
C13—H13 0.9500 C40—H40A 0.9900
C14—H14A 0.9800 C40—H40B 0.9900
C14—H14B 0.9800 C41—C42 1.495 (4)
C14—H14C 0.9800 C41—H41A 0.9900
C15—H15A 0.9800 C41—H41B 0.9900
C15—H15B 0.9800 C42—H42A 0.9800
C15—H15C 0.9800 C42—H42B 0.9800
C16—H16A 0.9900 C42—H42C 0.9800
C10—O3—C14 117.09 (15) C19—C20—H20B 117.8
C11—O4—C15 116.48 (16) C18—C20—H20B 117.8
C16—O5—C17 112.87 (14) H20A—C20—H20B 114.9
C30—O8—C34 115.82 (15) O6—C21—N3 122.06 (17)
C31—O9—C35 116.85 (16) O6—C21—N4 122.08 (17)
C36—O10—C37 114.01 (14) N3—C21—N4 115.86 (16)
C41—O11—H11 112 (2) O7—C22—N3 119.79 (17)
C1—N1—C2 126.77 (16) O7—C22—C23 125.01 (17)
C1—N1—H1 115.4 (17) N3—C22—C23 115.20 (17)
C2—N1—H1 117.8 (17) C24—C23—C22 119.35 (17)
C1—N2—C4 121.31 (16) C24—C23—C25 125.07 (17)
C1—N2—C16 117.50 (15) C22—C23—C25 115.53 (17)
C4—N2—C16 121.12 (15) C23—C24—N4 121.35 (16)
C21—N3—C22 126.78 (16) C23—C24—C27 123.35 (17)
C21—N3—H3 115.9 (16) N4—C24—C27 115.28 (16)
C22—N3—H3 117.3 (16) C23—C25—C26 112.49 (16)
C21—N4—C24 121.41 (16) C23—C25—H25A 109.1
C21—N4—C36 116.93 (15) C26—C25—H25A 109.1
C24—N4—C36 121.66 (15) C23—C25—H25B 109.1
O1—C1—N1 121.72 (17) C26—C25—H25B 109.1
O1—C1—N2 122.30 (18) H25A—C25—H25B 107.8
N1—C1—N2 115.98 (16) C25—C26—H26A 109.5
O2—C2—N1 119.93 (17) C25—C26—H26B 109.5
O2—C2—C3 124.93 (18) H26A—C26—H26B 109.5
N1—C2—C3 115.15 (17) C25—C26—H26C 109.5
C4—C3—C2 119.46 (17) H26A—C26—H26C 109.5
C4—C3—C5 124.76 (17) H26B—C26—H26C 109.5
C2—C3—C5 115.73 (17) C24—C27—C28 112.94 (15)
C3—C4—N2 121.32 (17) C24—C27—H27A 109.0
C3—C4—C7 123.46 (17) C28—C27—H27A 109.0
N2—C4—C7 115.21 (16) C24—C27—H27B 109.0
C3—C5—C6 112.34 (16) C28—C27—H27B 109.0
C3—C5—H5A 109.1 H27A—C27—H27B 107.8
C6—C5—H5A 109.1 C33—C28—C29 119.28 (17)
C3—C5—H5B 109.1 C33—C28—C27 122.37 (17)
C6—C5—H5B 109.1 C29—C28—C27 118.35 (17)
H5A—C5—H5B 107.9 C30—C29—C28 120.49 (18)
C5—C6—H6A 109.5 C30—C29—H29 119.8
C5—C6—H6B 109.5 C28—C29—H29 119.8
H6A—C6—H6B 109.5 O8—C30—C29 124.77 (18)
C5—C6—H6C 109.5 O8—C30—C31 115.46 (16)
H6A—C6—H6C 109.5 C29—C30—C31 119.74 (17)
H6B—C6—H6C 109.5 O9—C31—C32 125.38 (18)
C4—C7—C8 113.77 (15) O9—C31—C30 114.77 (17)
C4—C7—H7A 108.8 C32—C31—C30 119.82 (17)
C8—C7—H7A 108.8 C31—C32—C33 120.12 (18)
C4—C7—H7B 108.8 C31—C32—H32 119.9
C8—C7—H7B 108.8 C33—C32—H32 119.9
H7A—C7—H7B 107.7 C28—C33—C32 120.53 (18)
C13—C8—C9 118.39 (17) C28—C33—H33 119.7
C13—C8—C7 123.16 (17) C32—C33—H33 119.7
C9—C8—C7 118.39 (16) O8—C34—H34A 109.5
C10—C9—C8 121.17 (18) O8—C34—H34B 109.5
C10—C9—H9 119.4 H34A—C34—H34B 109.5
C8—C9—H9 119.4 O8—C34—H34C 109.5
O3—C10—C9 124.96 (17) H34A—C34—H34C 109.5
O3—C10—C11 115.58 (16) H34B—C34—H34C 109.5
C9—C10—C11 119.46 (17) O9—C35—H35A 109.5
O4—C11—C12 125.36 (17) O9—C35—H35B 109.5
O4—C11—C10 114.87 (17) H35A—C35—H35B 109.5
C12—C11—C10 119.77 (17) O9—C35—H35C 109.5
C11—C12—C13 120.17 (18) H35A—C35—H35C 109.5
C11—C12—H12 119.9 H35B—C35—H35C 109.5
C13—C12—H12 119.9 O10—C36—N4 112.66 (15)
C8—C13—C12 121.02 (18) O10—C36—H36A 109.1
C8—C13—H13 119.5 N4—C36—H36A 109.1
C12—C13—H13 119.5 O10—C36—H36B 109.1
O3—C14—H14A 109.5 N4—C36—H36B 109.1
O3—C14—H14B 109.5 H36A—C36—H36B 107.8
H14A—C14—H14B 109.5 O10—C37—C38 108.41 (16)
O3—C14—H14C 109.5 O10—C37—H37A 110.0
H14A—C14—H14C 109.5 C38—C37—H37A 110.0
H14B—C14—H14C 109.5 O10—C37—H37B 110.0
O4—C15—H15A 109.5 C38—C37—H37B 110.0
O4—C15—H15B 109.5 H37A—C37—H37B 108.4
H15A—C15—H15B 109.5 C39—C38—C37 118.25 (19)
O4—C15—H15C 109.5 C39—C38—C40 59.95 (14)
H15A—C15—H15C 109.5 C37—C38—C40 118.15 (19)
H15B—C15—H15C 109.5 C39—C38—H38 116.2
O5—C16—N2 112.32 (15) C37—C38—H38 116.2
O5—C16—H16A 109.1 C40—C38—H38 116.2
N2—C16—H16A 109.1 C38—C39—C40 60.39 (14)
O5—C16—H16B 109.1 C38—C39—H39A 117.7
N2—C16—H16B 109.1 C40—C39—H39A 117.7
H16A—C16—H16B 107.9 C38—C39—H39B 117.7
O5—C17—C18 109.67 (16) C40—C39—H39B 117.7
O5—C17—H17A 109.7 H39A—C39—H39B 114.9
C18—C17—H17A 109.7 C39—C40—C38 59.66 (14)
O5—C17—H17B 109.7 C39—C40—H40A 117.8
C18—C17—H17B 109.7 C38—C40—H40A 117.8
H17A—C17—H17B 108.2 C39—C40—H40B 117.8
C17—C18—C19 118.52 (18) C38—C40—H40B 117.8
C17—C18—C20 117.06 (18) H40A—C40—H40B 114.9
C19—C18—C20 60.09 (14) O11—C41—C42 113.9 (2)
C17—C18—H18 116.4 O11—C41—H41A 108.8
C19—C18—H18 116.4 C42—C41—H41A 108.8
C20—C18—H18 116.4 O11—C41—H41B 108.8
C18—C19—C20 60.12 (13) C42—C41—H41B 108.8
C18—C19—H19A 117.8 H41A—C41—H41B 107.7
C20—C19—H19A 117.8 C41—C42—H42A 109.5
C18—C19—H19B 117.8 C41—C42—H42B 109.5
C20—C19—H19B 117.8 H42A—C42—H42B 109.5
H19A—C19—H19B 114.9 C41—C42—H42C 109.5
C19—C20—C18 59.79 (13) H42A—C42—H42C 109.5
C19—C20—H20A 117.8 H42B—C42—H42C 109.5
C18—C20—H20A 117.8
C2—N1—C1—O1 −179.83 (17) C22—N3—C21—O6 −179.73 (17)
C2—N1—C1—N2 −0.3 (3) C22—N3—C21—N4 0.0 (3)
C4—N2—C1—O1 −179.19 (16) C24—N4—C21—O6 −178.35 (16)
C16—N2—C1—O1 3.8 (3) C36—N4—C21—O6 0.9 (3)
C4—N2—C1—N1 1.3 (2) C24—N4—C21—N3 1.9 (2)
C16—N2—C1—N1 −175.71 (15) C36—N4—C21—N3 −178.83 (15)
C1—N1—C2—O2 179.22 (17) C21—N3—C22—O7 178.62 (17)
C1—N1—C2—C3 −0.8 (3) C21—N3—C22—C23 −1.4 (3)
O2—C2—C3—C4 −179.02 (18) O7—C22—C23—C24 −179.12 (18)
N1—C2—C3—C4 1.0 (2) N3—C22—C23—C24 0.9 (2)
O2—C2—C3—C5 3.7 (3) O7—C22—C23—C25 3.3 (3)
N1—C2—C3—C5 −176.27 (15) N3—C22—C23—C25 −176.67 (15)
C2—C3—C4—N2 −0.1 (3) C22—C23—C24—N4 0.9 (3)
C5—C3—C4—N2 176.91 (16) C25—C23—C24—N4 178.20 (16)
C2—C3—C4—C7 −179.10 (16) C22—C23—C24—C27 −177.24 (16)
C5—C3—C4—C7 −2.1 (3) C25—C23—C24—C27 0.1 (3)
C1—N2—C4—C3 −1.1 (3) C21—N4—C24—C23 −2.4 (3)
C16—N2—C4—C3 175.80 (16) C36—N4—C24—C23 178.37 (16)
C1—N2—C4—C7 177.94 (15) C21—N4—C24—C27 175.87 (15)
C16—N2—C4—C7 −5.1 (2) C36—N4—C24—C27 −3.4 (2)
C4—C3—C5—C6 −89.8 (2) C24—C23—C25—C26 −89.8 (2)
C2—C3—C5—C6 87.3 (2) C22—C23—C25—C26 87.6 (2)
C3—C4—C7—C8 100.9 (2) C23—C24—C27—C28 105.5 (2)
N2—C4—C7—C8 −78.2 (2) N4—C24—C27—C28 −72.8 (2)
C4—C7—C8—C13 −19.6 (3) C24—C27—C28—C33 −29.1 (2)
C4—C7—C8—C9 163.29 (17) C24—C27—C28—C29 151.34 (17)
C13—C8—C9—C10 −1.2 (3) C33—C28—C29—C30 0.8 (3)
C7—C8—C9—C10 176.06 (17) C27—C28—C29—C30 −179.64 (17)
C14—O3—C10—C9 4.7 (3) C34—O8—C30—C29 10.2 (3)
C14—O3—C10—C11 −175.13 (17) C34—O8—C30—C31 −171.77 (17)
C8—C9—C10—O3 −179.42 (18) C28—C29—C30—O8 176.90 (17)
C8—C9—C10—C11 0.4 (3) C28—C29—C30—C31 −1.0 (3)
C15—O4—C11—C12 −6.3 (3) C35—O9—C31—C32 4.1 (3)
C15—O4—C11—C10 174.49 (19) C35—O9—C31—C30 −174.06 (19)
O3—C10—C11—O4 −0.3 (3) O8—C30—C31—O9 0.4 (3)
C9—C10—C11—O4 179.84 (17) C29—C30—C31—O9 178.56 (17)
O3—C10—C11—C12 −179.57 (17) O8—C30—C31—C32 −177.86 (17)
C9—C10—C11—C12 0.6 (3) C29—C30—C31—C32 0.3 (3)
O4—C11—C12—C13 −179.94 (18) O9—C31—C32—C33 −177.37 (18)
C10—C11—C12—C13 −0.8 (3) C30—C31—C32—C33 0.7 (3)
C9—C8—C13—C12 1.0 (3) C29—C28—C33—C32 0.2 (3)
C7—C8—C13—C12 −176.10 (17) C27—C28—C33—C32 −179.34 (17)
C11—C12—C13—C8 −0.1 (3) C31—C32—C33—C28 −1.0 (3)
C17—O5—C16—N2 −70.73 (19) C37—O10—C36—N4 −73.12 (19)
C1—N2—C16—O5 106.91 (18) C21—N4—C36—O10 108.98 (17)
C4—N2—C16—O5 −70.1 (2) C24—N4—C36—O10 −71.7 (2)
C16—O5—C17—C18 −179.34 (16) C36—O10—C37—C38 −177.59 (16)
O5—C17—C18—C19 −77.3 (2) O10—C37—C38—C39 −78.7 (2)
O5—C17—C18—C20 −146.26 (17) O10—C37—C38—C40 −147.80 (18)
C17—C18—C19—C20 −106.5 (2) C37—C38—C39—C40 −107.9 (2)
C17—C18—C20—C19 109.0 (2) C37—C38—C40—C39 108.1 (2)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N1—H1···O1i 0.88 (1) 1.96 (1) 2.839 (2) 177 (2)
N3—H3···O6ii 0.88 (1) 1.92 (1) 2.799 (2) 175 (2)
O11—H11···O10 0.85 (1) 2.08 (1) 2.927 (2) 178 (1)

Symmetry codes: (i) −x+2, −y+1, −z+1; (ii) −x+1, −y+2, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: XU5424).

References

  1. Agilent (2010). CrysAlis PRO Agilent Technologies, Yarnton, England.
  2. Barbour, L. J. (2001). J. Supramol. Chem. 1, 189–191.
  3. El-Brollosy, N. R. (2008). Monatsh. Chem. 139, 1483–1490.
  4. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  5. Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811055693/xu5424sup1.cif

e-68-0o349-sup1.cif (34.1KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811055693/xu5424Isup2.hkl

e-68-0o349-Isup2.hkl (460.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811055693/xu5424Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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