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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Jan 14;68(Pt 2):o373. doi: 10.1107/S1600536811056091

5-Bromo-3-cyclo­pentyl­sulfinyl-2,7-dimethyl-1-benzofuran

Hong Dae Choi a, Pil Ja Seo a, Uk Lee b,*
PMCID: PMC3275051  PMID: 22346996

Abstract

In the title compound, C15H17BrO2S, the cyclo­pentyl ring adopts an envelope conformation. In the crystal, mol­ecules are linked by weak C—H⋯O hydrogen bonds. A slipped π–π inter­action occurs between the furan and benzene rings of adjacent mol­ecules [centroid–centroid distance = 3.892 (3) Å and slippage = 1.786 (3) Å]. The crystal structure also exhibits a weak C—Br⋯π [2.919 (3) Å] inter­action.

Related literature

For the biological activity of benzofuran compounds, see: Aslam et al. (2009); Galal et al. (2009); Khan et al. (2005). For natural products with benzofuran rings, see: Akgul & Anil (2003); Soekamto et al. (2003). For the crystal structures of related compounds, see: Choi et al. (2011a,b ).graphic file with name e-68-0o373-scheme1.jpg

Experimental

Crystal data

  • C15H17BrO2S

  • M r = 341.26

  • Orthorhombic, Inline graphic

  • a = 19.5624 (8) Å

  • b = 8.3501 (4) Å

  • c = 17.5346 (7) Å

  • V = 2864.2 (2) Å3

  • Z = 8

  • Mo Kα radiation

  • μ = 3.01 mm−1

  • T = 173 K

  • 0.36 × 0.19 × 0.04 mm

Data collection

  • Bruker SMART APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2009) T min = 0.414, T max = 0.899

  • 14696 measured reflections

  • 3561 independent reflections

  • 2232 reflections with I > 2σ(I)

  • R int = 0.052

Refinement

  • R[F 2 > 2σ(F 2)] = 0.043

  • wR(F 2) = 0.094

  • S = 1.01

  • 3561 reflections

  • 174 parameters

  • H-atom parameters constrained

  • Δρmax = 0.43 e Å−3

  • Δρmin = −0.51 e Å−3

Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 1998); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811056091/xu5434sup1.cif

e-68-0o373-sup1.cif (24.1KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811056091/xu5434Isup2.hkl

e-68-0o373-Isup2.hkl (174.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811056091/xu5434Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C5—H5⋯O2i 0.95 2.60 3.465 (3) 152
C9—H9B⋯O2i 0.98 2.55 3.489 (3) 161
C10—H10B⋯O1ii 0.98 2.60 3.480 (3) 149

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

This work was supported by the Blue-Bio Industry Regional Innovation Center (RIC08-06-07) at Dongeui University as an RIC program under the Ministry of Knowledge Economy and Busan City.

supplementary crystallographic information

Comment

Benzofuran derivatives have drawn much interest in view of their valuable biological properties such as antibacterial and antifungal, antitumor and antiviral, and antimicrobial activities (Aslam et al., 2009, Galal et al., 2009, Khan et al., 2005). These benzofuran derivatives occur in a wide range of natural products (Akgul & Anil, 2003; Soekamto et al., 2003). As a part of our continuing study of 5-bromo-2,7-dimethyl-1-benzofuran derivatives containing either 3-cyclohexylsulfinyl (Choi et al., 2011a) or 3-cyclohexylsulfonyl (Choi et al., 2011b) substituents, we report herein the crystal structure of the title compound.

In the title molecule (Fig. 1), the benzofuran unit is essentially planar, with a mean deviation of 0.020 (1) Å from the least-squares plane defined by the nine constituent atoms. The cyclopentyl ring is in the envelope form. The crystal packing (Fig. 2) is stabilized by weak intermolecular C–H···O hydrogen bonds (see, Table 1). The crystal packing (Fig. 3) is further stabilized by a weak intermolecular C—Br···π interaction between the bromine and the benzene ring of an adjacent molecule, with a C4—Br1···Cg2ii [2.919 (3) Å] (Cg2 is the centroid of the C2-C7 benzene ring). The crystal packing (Fig. 3) also exhibits a weak slipped π···π interaction between the furan and benzene rings of adjacent molecules, with a Cg1···Cg2i distance of 3.892 (4) Å and an interplanar distance of 3.458 (3) Å resulting in a slippage of 1.786 (3) Å (Cg1 is the centroid of the C1/C2/C7/O1/C8 furan ring).

Experimental

77% 3-chloroperoxybenzoic acid (202 mg, 0.9 mmol) was added in small portions to a stirred solution of 5-bromo-3-cyclopentylsulfanyl-2,7-dimethyl-1-benzofuran (260 mg, 0.8 mmol) in dichloromethane (30 mL) at 273 K. After being stirred at room temperature for 6 h, the mixture was washed with saturated sodium bicarbonate solution and the organic layer was separated, dried over magnesium sulfate, filtered and concentrated at reduced pressure. The residue was purified by column chromatography (hexane–ethyl acetate, 1:1 v/v) to afford the title compound as a colorless solid [yield 67%, m.p. 415–416 K; Rf = 0.51 (hexane–ethyl acetate, 1:1 v/v)]. Single crystals suitable for X-ray diffraction were prepared by slow evaporation of a solution of the title compound in benzene at room temperature.

Refinement

All H atoms were positioned geometrically and refined using a riding model, with C—H = 0.95 Å for aryl, 1.00 Å for methine, 0.99 Å for methylene and 0.98 Å for methyl H atoms, respectively. Uiso(H) =1.2Ueq(C) for aryl, methine and methylene, and 1.5Ueq(C) for methyl H atoms.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound with the atom numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are presented as small spheres of arbitrary radius.

Fig. 2.

Fig. 2.

A view of the C—H···O hydrogen bonds (dotted lines) in the crystal structure of the title compound. H atoms non-participating in hydrogen-bonding were omitted for clarity. [Symmetry codes: (i) x, - y + 1, z + 1/2; (ii) - x + 1, - y + 2, - z + 1.]

Fig. 3.

Fig. 3.

A view of the C—Br···π and π···π interactions (dotted lines) in the crystal structure of the title compound. All H atoms were omitted for clarity. [Symmetry codes: (i) 1 - x, 1- y, 1 - z; (ii) - x + 3/2, y - 1/2, z; (iii) - x + 3/2, y + 1/2, z. ]

Crystal data

C15H17BrO2S F(000) = 1392
Mr = 341.26 Dx = 1.583 Mg m3
Orthorhombic, Pbcn Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2n 2ab Cell parameters from 2605 reflections
a = 19.5624 (8) Å θ = 2.6–23.7°
b = 8.3501 (4) Å µ = 3.01 mm1
c = 17.5346 (7) Å T = 173 K
V = 2864.2 (2) Å3 Block, colourless
Z = 8 0.36 × 0.19 × 0.04 mm

Data collection

Bruker SMART APEXII CCD diffractometer 3561 independent reflections
Radiation source: rotating anode 2232 reflections with I > 2σ(I)
graphite multilayer Rint = 0.052
Detector resolution: 10.0 pixels mm-1 θmax = 28.4°, θmin = 2.1°
φ and ω scans h = −18→25
Absorption correction: multi-scan (SADABS; Bruker, 2009) k = −11→11
Tmin = 0.414, Tmax = 0.899 l = −23→17
14696 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043 Hydrogen site location: difference Fourier map
wR(F2) = 0.094 H-atom parameters constrained
S = 1.01 w = 1/[σ2(Fo2) + (0.0345P)2 + 1.0227P] where P = (Fo2 + 2Fc2)/3
3561 reflections (Δ/σ)max = 0.001
174 parameters Δρmax = 0.43 e Å3
0 restraints Δρmin = −0.51 e Å3

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Br1 0.746477 (15) 0.35697 (4) 0.531719 (18) 0.04220 (13)
S1 0.58692 (4) 0.79730 (10) 0.30668 (4) 0.0302 (2)
O1 0.49506 (9) 0.7539 (2) 0.50628 (9) 0.0242 (4)
O2 0.61660 (12) 0.6477 (3) 0.27475 (11) 0.0467 (6)
C1 0.55893 (14) 0.7536 (3) 0.39992 (14) 0.0224 (6)
C2 0.59386 (14) 0.6560 (3) 0.45635 (14) 0.0210 (6)
C3 0.65304 (14) 0.5643 (3) 0.45788 (14) 0.0233 (6)
H3 0.6819 0.5542 0.4146 0.028*
C4 0.66740 (13) 0.4885 (3) 0.52599 (15) 0.0249 (6)
C5 0.62665 (13) 0.5023 (3) 0.59087 (15) 0.0236 (6)
H5 0.6400 0.4501 0.6366 0.028*
C6 0.56704 (14) 0.5911 (3) 0.58952 (15) 0.0215 (6)
C7 0.55264 (13) 0.6627 (3) 0.52041 (14) 0.0195 (6)
C8 0.50046 (14) 0.8064 (3) 0.43205 (15) 0.0239 (6)
C9 0.52221 (14) 0.6084 (3) 0.65801 (15) 0.0286 (7)
H9A 0.5216 0.7208 0.6742 0.043*
H9B 0.5400 0.5417 0.6995 0.043*
H9C 0.4757 0.5742 0.6452 0.043*
C10 0.44272 (14) 0.9041 (4) 0.40406 (17) 0.0332 (7)
H10A 0.4490 0.9265 0.3496 0.050*
H10B 0.4410 1.0053 0.4324 0.050*
H10C 0.3999 0.8455 0.4116 0.050*
C11 0.65806 (14) 0.9260 (3) 0.33175 (15) 0.0258 (7)
H11 0.6900 0.8687 0.3669 0.031*
C12 0.63212 (15) 1.0808 (4) 0.36924 (17) 0.0356 (8)
H12A 0.5815 1.0849 0.3686 0.043*
H12B 0.6480 1.0883 0.4227 0.043*
C13 0.66218 (16) 1.2156 (4) 0.32140 (17) 0.0371 (8)
H13A 0.6312 1.3092 0.3205 0.044*
H13B 0.7071 1.2495 0.3417 0.044*
C14 0.66965 (16) 1.1439 (4) 0.24250 (18) 0.0385 (8)
H14A 0.6252 1.1405 0.2156 0.046*
H14B 0.7027 1.2055 0.2114 0.046*
C15 0.69583 (15) 0.9771 (3) 0.25871 (15) 0.0298 (7)
H15A 0.7459 0.9779 0.2669 0.036*
H15B 0.6851 0.9037 0.2160 0.036*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Br1 0.0393 (2) 0.0479 (2) 0.0394 (2) 0.01898 (17) 0.00616 (15) 0.00728 (15)
S1 0.0354 (5) 0.0370 (4) 0.0182 (4) −0.0105 (4) −0.0025 (3) 0.0023 (3)
O1 0.0247 (11) 0.0265 (11) 0.0214 (10) −0.0013 (10) 0.0002 (8) 0.0014 (8)
O2 0.0728 (17) 0.0374 (13) 0.0298 (12) −0.0144 (12) 0.0162 (11) −0.0126 (10)
C1 0.0270 (16) 0.0230 (15) 0.0173 (14) −0.0050 (13) −0.0028 (12) 0.0002 (11)
C2 0.0232 (15) 0.0227 (15) 0.0169 (14) −0.0049 (13) −0.0009 (12) −0.0021 (11)
C3 0.0249 (16) 0.0252 (15) 0.0199 (15) −0.0049 (13) 0.0051 (12) −0.0032 (12)
C4 0.0235 (16) 0.0217 (15) 0.0296 (16) 0.0029 (13) −0.0017 (13) −0.0022 (12)
C5 0.0305 (16) 0.0215 (14) 0.0189 (14) −0.0019 (13) 0.0009 (12) 0.0010 (12)
C6 0.0267 (16) 0.0178 (14) 0.0199 (14) −0.0047 (12) 0.0018 (12) −0.0041 (11)
C7 0.0190 (15) 0.0193 (14) 0.0202 (14) −0.0022 (12) −0.0019 (12) −0.0014 (11)
C8 0.0270 (17) 0.0226 (15) 0.0219 (14) −0.0063 (13) −0.0070 (12) 0.0015 (12)
C9 0.0303 (17) 0.0327 (17) 0.0229 (15) 0.0004 (14) 0.0052 (13) 0.0030 (12)
C10 0.0351 (18) 0.0300 (17) 0.0345 (18) −0.0006 (14) −0.0069 (14) 0.0026 (14)
C11 0.0230 (16) 0.0281 (16) 0.0262 (15) 0.0006 (13) 0.0001 (13) 0.0025 (12)
C12 0.0340 (19) 0.0309 (18) 0.0419 (19) −0.0032 (15) 0.0092 (15) −0.0070 (14)
C13 0.0345 (19) 0.0282 (18) 0.049 (2) −0.0037 (15) 0.0022 (15) −0.0062 (15)
C14 0.040 (2) 0.0314 (18) 0.044 (2) −0.0028 (15) −0.0053 (15) 0.0088 (15)
C15 0.0290 (17) 0.0310 (17) 0.0295 (16) −0.0032 (15) 0.0038 (13) 0.0040 (13)

Geometric parameters (Å, °)

Br1—C4 1.900 (3) C9—H9B 0.9800
S1—O2 1.487 (2) C9—H9C 0.9800
S1—C1 1.762 (3) C10—H10A 0.9800
S1—C11 1.813 (3) C10—H10B 0.9800
O1—C8 1.378 (3) C10—H10C 0.9800
O1—C7 1.382 (3) C11—C12 1.536 (4)
C1—C8 1.349 (4) C11—C15 1.539 (4)
C1—C2 1.453 (4) C11—H11 1.0000
C2—C7 1.384 (3) C12—C13 1.521 (4)
C2—C3 1.388 (4) C12—H12A 0.9900
C3—C4 1.380 (3) C12—H12B 0.9900
C3—H3 0.9500 C13—C14 1.514 (4)
C4—C5 1.394 (3) C13—H13A 0.9900
C5—C6 1.382 (4) C13—H13B 0.9900
C5—H5 0.9500 C14—C15 1.512 (4)
C6—C7 1.380 (3) C14—H14A 0.9900
C6—C9 1.494 (4) C14—H14B 0.9900
C8—C10 1.477 (4) C15—H15A 0.9900
C9—H9A 0.9800 C15—H15B 0.9900
O2—S1—C1 107.27 (13) C8—C10—H10B 109.5
O2—S1—C11 106.84 (13) H10A—C10—H10B 109.5
C1—S1—C11 97.83 (12) C8—C10—H10C 109.5
C8—O1—C7 106.4 (2) H10A—C10—H10C 109.5
C8—C1—C2 107.3 (2) H10B—C10—H10C 109.5
C8—C1—S1 125.7 (2) C12—C11—C15 106.4 (2)
C2—C1—S1 127.0 (2) C12—C11—S1 110.44 (19)
C7—C2—C3 119.5 (2) C15—C11—S1 109.33 (19)
C7—C2—C1 104.8 (2) C12—C11—H11 110.2
C3—C2—C1 135.6 (2) C15—C11—H11 110.2
C4—C3—C2 116.0 (2) S1—C11—H11 110.2
C4—C3—H3 122.0 C13—C12—C11 105.0 (2)
C2—C3—H3 122.0 C13—C12—H12A 110.8
C3—C4—C5 123.5 (3) C11—C12—H12A 110.8
C3—C4—Br1 118.4 (2) C13—C12—H12B 110.8
C5—C4—Br1 118.1 (2) C11—C12—H12B 110.8
C6—C5—C4 120.9 (2) H12A—C12—H12B 108.8
C6—C5—H5 119.6 C14—C13—C12 104.4 (2)
C4—C5—H5 119.6 C14—C13—H13A 110.9
C7—C6—C5 114.8 (2) C12—C13—H13A 110.9
C7—C6—C9 122.9 (2) C14—C13—H13B 110.9
C5—C6—C9 122.3 (2) C12—C13—H13B 110.9
C6—C7—O1 124.2 (2) H13A—C13—H13B 108.9
C6—C7—C2 125.2 (3) C15—C14—C13 103.0 (2)
O1—C7—C2 110.6 (2) C15—C14—H14A 111.2
C1—C8—O1 110.8 (2) C13—C14—H14A 111.2
C1—C8—C10 133.6 (3) C15—C14—H14B 111.2
O1—C8—C10 115.5 (2) C13—C14—H14B 111.2
C6—C9—H9A 109.5 H14A—C14—H14B 109.1
C6—C9—H9B 109.5 C14—C15—C11 104.4 (2)
H9A—C9—H9B 109.5 C14—C15—H15A 110.9
C6—C9—H9C 109.5 C11—C15—H15A 110.9
H9A—C9—H9C 109.5 C14—C15—H15B 110.9
H9B—C9—H9C 109.5 C11—C15—H15B 110.9
C8—C10—H10A 109.5 H15A—C15—H15B 108.9
O2—S1—C1—C8 −139.5 (2) C3—C2—C7—C6 3.7 (4)
C11—S1—C1—C8 110.1 (3) C1—C2—C7—C6 −177.7 (3)
O2—S1—C1—C2 40.8 (3) C3—C2—C7—O1 −177.3 (2)
C11—S1—C1—C2 −69.6 (3) C1—C2—C7—O1 1.3 (3)
C8—C1—C2—C7 −1.7 (3) C2—C1—C8—O1 1.5 (3)
S1—C1—C2—C7 178.1 (2) S1—C1—C8—O1 −178.30 (18)
C8—C1—C2—C3 176.6 (3) C2—C1—C8—C10 −177.6 (3)
S1—C1—C2—C3 −3.6 (5) S1—C1—C8—C10 2.6 (5)
C7—C2—C3—C4 −1.9 (4) C7—O1—C8—C1 −0.7 (3)
C1—C2—C3—C4 −179.9 (3) C7—O1—C8—C10 178.6 (2)
C2—C3—C4—C5 −0.9 (4) O2—S1—C11—C12 −177.07 (19)
C2—C3—C4—Br1 178.6 (2) C1—S1—C11—C12 −66.3 (2)
C3—C4—C5—C6 2.1 (4) O2—S1—C11—C15 66.2 (2)
Br1—C4—C5—C6 −177.4 (2) C1—S1—C11—C15 177.0 (2)
C4—C5—C6—C7 −0.4 (4) C15—C11—C12—C13 −5.9 (3)
C4—C5—C6—C9 −180.0 (2) S1—C11—C12—C13 −124.4 (2)
C5—C6—C7—O1 178.7 (2) C11—C12—C13—C14 28.9 (3)
C9—C6—C7—O1 −1.7 (4) C12—C13—C14—C15 −41.2 (3)
C5—C6—C7—C2 −2.5 (4) C13—C14—C15—C11 37.0 (3)
C9—C6—C7—C2 177.1 (3) C12—C11—C15—C14 −19.3 (3)
C8—O1—C7—C6 178.5 (2) S1—C11—C15—C14 100.0 (2)
C8—O1—C7—C2 −0.4 (3)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C5—H5···O2i 0.95 2.60 3.465 (3) 152.
C9—H9B···O2i 0.98 2.55 3.489 (3) 161.
C10—H10B···O1ii 0.98 2.60 3.480 (3) 149.

Symmetry codes: (i) x, −y+1, z+1/2; (ii) −x+1, −y+2, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: XU5434).

References

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  6. Choi, H. D., Seo, P. J., Son, B. W. & Lee, U. (2011b). Acta Cryst. E67, o1279. [DOI] [PMC free article] [PubMed]
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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811056091/xu5434sup1.cif

e-68-0o373-sup1.cif (24.1KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811056091/xu5434Isup2.hkl

e-68-0o373-Isup2.hkl (174.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811056091/xu5434Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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