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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Jan 25;68(Pt 2):o511. doi: 10.1107/S1600536812002474

2-Amino-5-nitro­benzoic acid

Hakkı Yasin Odabaşoğlu a, Orhan Büyükgüngör b,*, Osman Ozan Avinç a, Mustafa Odabaşoğlu c
PMCID: PMC3275255  PMID: 22347111

Abstract

In the title compound, C7H6N2O4, an intra­molecular N—H⋯O hydrogen bond generates an S(6) ring. In the crystal, inversion dimers linked by pairs of O—H⋯O hydrogen bonds generate R 2 2(8) loops. Inter­molecular N—H⋯O and C—H⋯O hydrogen bonds then link the dimers, generating R 3 3(16)R 2 1(6) motifs. The whole mol­ecule is essentially planar, with the greatest deviation from the mean plane being 0.065 (2) Å.

Related literature

For related structures of carb­oxy­lic acides, see: Mrozek & Glowiak (2004); Raza et al. (2010); Grabowski & Krygowski (1985). For hydrogen-bond motifs, see: Bernstein et al. (1995). For general background to o-amino­carb­oxy­lic acids, see: Fierz et al. (1949); Shore (2002).graphic file with name e-68-0o511-scheme1.jpg

Experimental

Crystal data

  • C7H6N2O4

  • M r = 182.14

  • Monoclinic, Inline graphic

  • a = 3.7026 (3) Å

  • b = 17.4638 (16) Å

  • c = 11.6953 (10) Å

  • β = 92.210 (7)°

  • V = 755.67 (11) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.13 mm−1

  • T = 296 K

  • 0.55 × 0.23 × 0.06 mm

Data collection

  • Stoe IPDS II diffractometer

  • Absorption correction: integration (X-RED32; Stoe & Cie, 2002) T min = 0.964, T max = 0.992

  • 5176 measured reflections

  • 1567 independent reflections

  • 884 reflections with I > 2σ(I)

  • R int = 0.077

Refinement

  • R[F 2 > 2σ(F 2)] = 0.064

  • wR(F 2) = 0.127

  • S = 0.99

  • 1567 reflections

  • 118 parameters

  • H-atom parameters constrained

  • Δρmax = 0.18 e Å−3

  • Δρmin = −0.15 e Å−3

Data collection: X-AREA (Stoe & Cie, 2002); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812002474/fk2050sup1.cif

e-68-0o511-sup1.cif (14.6KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812002474/fk2050Isup2.hkl

e-68-0o511-Isup2.hkl (75.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812002474/fk2050Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H7⋯O1 0.86 2.06 2.694 (3) 130
N1—H7⋯O4i 0.86 2.47 3.030 (3) 123
N1—H8⋯O3ii 0.86 2.39 3.192 (4) 155
O2—H2⋯O1iii 0.82 1.81 2.631 (3) 174
C6—H6⋯O3ii 0.93 2.54 3.347 (4) 145 (3)

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

The authors acknowledge the Faculty of Arts and Sciences, Ondokuz Mayıs University, Turkey, for the use of the Stoe IPDS II diffractometer (purchased under grant F.279 of the University Research Fund).

supplementary crystallographic information

Comment

Most dyes contain groups known as auxochromes (colour helpers), examples of which are carboxylic acid, sulfonic acid, amino, and hydroxyl groups. While these groups are not responsible for colour, their presence can shift the colour of a colourant and they are most often used to influence dye solubility. Aminocarboxylic acids dissolve as easily in carbonate solution as does benzoic acid, and as easily in aqueous hydrochloric acid as does aniline. o-Aminocarboxylic acids are used for synthesis of azo dyes and indigo dyes (Fierz et al., 1949; Shore, 2002). Functional groups such as carboxylic acids are completely inert in the reaction conditions for the azo coupling reaction. Taking into account these important features of the o-aminocarboxylic acids for the dye synthesis, we have undertaken the X-ray diffraction study of the 2-amino-5-nitrobenzoic acid, (I) (Fig. 1), in order to understand the molecular features which stabilize its observed conformation.

In previous works, 5-amino-2-nitrobenzoic acid (Mrozek & Glowiak, 2004), 2-Methylamino-5-nitrobenzoic acid (Raza et al., 2010), 2,5-dinitrobenzoic acid (Grabowski & Krygowski, 1985) have been published whose molecular structures are similar to the title compound.

(I) is essentially planar, the largest deviation from the mean plane being -0.065 (2) Å for atom O1. The crystal packing is stabilized by N-H···O, O-H···O and C-H···O hydrogen bonds. There exists an S(6) ring motif (Bernstein et al., 1995) due to the N-H···O intramolecular bond. Molecules are connected by intermolecular O-H···O hydrogen bonds to form centrosymmetric dimers with R22(8) ring motifs. Other hydrogen bonds generate R33(16)R21(6) motifs (Fig. 2 and Table 1).

Experimental

Yellow needles of 2-amino-5-nitrobenzoic acid were obtained by slow evaporation of the analytical reagent (Alfa Aesar) from ethyl alcohol solution (m.p. 543 K).

Refinement

The H(O) position was derived from Fourier maps (HFIX 147), other H atoms were positioned geometrically and all were constrained to ride on their parent atoms, with 0.86 Å for N—H, 0.93 Å for aromatic C-H and 0.82 Å for O-H. The Uiso(H) = xUeq(C/N), where x = 1.2 for H(N,C) and x = 1.5 for H(O).

Figures

Fig. 1.

Fig. 1.

Molecular structure of (I). Anisotropic displacement ellipsoids are drawn at the 40% probability level.

Fig. 2.

Fig. 2.

Crystal packing of (I), with hydrogen bonds drawn as dashed lines. [Symmetry codes: (i)x + 1/2, 1 - y, 2 - z; (ii)x - 1/2, y + 1/2, 3/2 - z; (iii)1/2 - x, 1/2 - y, z - 1/2].

Crystal data

C7H6N2O4 F(000) = 376
Mr = 182.14 Dx = 1.601 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 4323 reflections
a = 3.7026 (3) Å θ = 1.7–28.0°
b = 17.4638 (16) Å µ = 0.13 mm1
c = 11.6953 (10) Å T = 296 K
β = 92.210 (7)° Needle, orange
V = 755.67 (11) Å3 0.55 × 0.23 × 0.06 mm
Z = 4

Data collection

Stoe IPDS II diffractometer 1567 independent reflections
Radiation source: fine-focus sealed tube 884 reflections with I > 2σ(I)
graphite Rint = 0.077
Detector resolution: 6.67 pixels mm-1 θmax = 26.5°, θmin = 2.1°
rotation method scans h = −4→4
Absorption correction: integration (X-RED32; Stoe & Cie, 2002) k = −21→21
Tmin = 0.964, Tmax = 0.992 l = −13→14
5176 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.064 Hydrogen site location: geom and difmap
wR(F2) = 0.127 H-atom parameters constrained
S = 0.99 w = 1/[σ2(Fo2) + (0.0486P)2] where P = (Fo2 + 2Fc2)/3
1567 reflections (Δ/σ)max < 0.001
118 parameters Δρmax = 0.18 e Å3
0 restraints Δρmin = −0.15 e Å3

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 0.6059 (8) 0.35123 (17) 0.7289 (3) 0.0393 (7)
C2 0.7771 (8) 0.34418 (16) 0.8394 (2) 0.0346 (7)
C3 0.8661 (8) 0.27231 (16) 0.8809 (3) 0.0370 (7)
H3 0.9810 0.2678 0.9527 0.044*
C4 0.7890 (8) 0.20744 (16) 0.8187 (3) 0.0380 (7)
C5 0.6210 (9) 0.21311 (18) 0.7098 (3) 0.0444 (8)
H5 0.5688 0.1692 0.6673 0.053*
C6 0.5351 (9) 0.28294 (17) 0.6667 (3) 0.0431 (8)
H6 0.4261 0.2862 0.5939 0.052*
C7 0.8660 (8) 0.41190 (17) 0.9097 (2) 0.0383 (7)
N1 0.5107 (8) 0.41812 (15) 0.6824 (2) 0.0548 (8)
H8 0.4074 0.4196 0.6154 0.066*
H7 0.5526 0.4599 0.7195 0.066*
N2 0.8912 (8) 0.13354 (14) 0.8636 (2) 0.0502 (7)
O1 0.7787 (6) 0.47709 (12) 0.88101 (17) 0.0513 (6)
O2 1.0433 (6) 0.39701 (12) 1.00684 (18) 0.0528 (7)
H2 1.0837 0.4371 1.0415 0.079*
O3 1.0514 (7) 0.12980 (13) 0.9571 (2) 0.0681 (8)
O4 0.8171 (9) 0.07683 (14) 0.8068 (2) 0.0845 (10)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.0370 (18) 0.0391 (17) 0.0415 (17) 0.0007 (14) −0.0015 (13) 0.0015 (13)
C2 0.0378 (17) 0.0336 (16) 0.0325 (15) −0.0016 (14) −0.0002 (12) −0.0043 (13)
C3 0.0391 (18) 0.0395 (16) 0.0321 (16) −0.0021 (14) −0.0016 (13) −0.0019 (12)
C4 0.0395 (18) 0.0330 (16) 0.0416 (18) −0.0020 (13) 0.0014 (13) −0.0032 (13)
C5 0.048 (2) 0.0421 (19) 0.0429 (18) −0.0067 (15) −0.0033 (14) −0.0124 (14)
C6 0.0469 (19) 0.047 (2) 0.0346 (17) −0.0021 (15) −0.0062 (14) −0.0048 (13)
C7 0.0434 (19) 0.0348 (18) 0.0365 (16) −0.0006 (14) −0.0019 (14) −0.0014 (13)
N1 0.080 (2) 0.0407 (15) 0.0426 (15) 0.0062 (15) −0.0147 (14) 0.0012 (12)
N2 0.0641 (19) 0.0336 (15) 0.0525 (17) −0.0013 (14) −0.0031 (14) −0.0037 (13)
O1 0.0766 (17) 0.0322 (12) 0.0440 (12) −0.0002 (11) −0.0120 (11) −0.0020 (10)
O2 0.0786 (17) 0.0343 (11) 0.0440 (13) −0.0030 (11) −0.0187 (12) −0.0061 (9)
O3 0.101 (2) 0.0436 (14) 0.0573 (15) 0.0040 (13) −0.0228 (15) 0.0032 (11)
O4 0.134 (3) 0.0334 (14) 0.084 (2) −0.0019 (15) −0.0263 (18) −0.0118 (13)

Geometric parameters (Å, °)

C1—N1 1.330 (4) C5—H5 0.9300
C1—C6 1.416 (4) C6—H6 0.9300
C1—C2 1.423 (4) C7—O1 1.227 (3)
C2—C3 1.381 (4) C7—O2 1.316 (3)
C2—C7 1.470 (4) N1—H8 0.8600
C3—C4 1.370 (4) N1—H7 0.8600
C3—H3 0.9300 N2—O4 1.218 (3)
C4—C5 1.399 (4) N2—O3 1.226 (3)
C4—N2 1.439 (4) O2—H2 0.8200
C5—C6 1.353 (4)
N1—C1—C6 119.3 (3) C4—C5—H5 120.2
N1—C1—C2 123.3 (3) C5—C6—C1 122.1 (3)
C6—C1—C2 117.4 (3) C5—C6—H6 118.9
C3—C2—C1 119.3 (3) C1—C6—H6 118.9
C3—C2—C7 119.3 (3) O1—C7—O2 122.5 (3)
C1—C2—C7 121.4 (3) O1—C7—C2 122.9 (3)
C4—C3—C2 121.5 (3) O2—C7—C2 114.7 (3)
C4—C3—H3 119.2 C1—N1—H8 120.0
C2—C3—H3 119.2 C1—N1—H7 120.0
C3—C4—C5 120.1 (3) H8—N1—H7 120.0
C3—C4—N2 120.1 (3) O4—N2—O3 122.3 (3)
C5—C4—N2 119.8 (3) O4—N2—C4 118.7 (3)
C6—C5—C4 119.5 (3) O3—N2—C4 119.0 (3)
C6—C5—H5 120.2 C7—O2—H2 109.5
N1—C1—C2—C3 179.9 (3) N1—C1—C6—C5 −179.1 (3)
C6—C1—C2—C3 0.1 (4) C2—C1—C6—C5 0.8 (4)
N1—C1—C2—C7 −1.0 (4) C3—C2—C7—O1 −176.2 (3)
C6—C1—C2—C7 179.1 (3) C1—C2—C7—O1 4.8 (5)
C1—C2—C3—C4 −0.9 (4) C3—C2—C7—O2 3.1 (4)
C7—C2—C3—C4 180.0 (3) C1—C2—C7—O2 −176.0 (3)
C2—C3—C4—C5 1.0 (5) C3—C4—N2—O4 179.5 (3)
C2—C3—C4—N2 178.9 (3) C5—C4—N2—O4 −2.5 (5)
C3—C4—C5—C6 −0.1 (5) C3—C4—N2—O3 −0.9 (5)
N2—C4—C5—C6 −178.1 (3) C5—C4—N2—O3 177.0 (3)
C4—C5—C6—C1 −0.7 (5)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N1—H7···O1 0.86 2.06 2.694 (3) 130
N1—H7···O4i 0.86 2.47 3.030 (3) 123
N1—H8···O3ii 0.86 2.39 3.192 (4) 155
O2—H2···O1iii 0.82 1.81 2.631 (3) 174
C6—H6···O3ii 0.93 2.54 3.347 (4) 145 (3)

Symmetry codes: (i) −x+1, y+1/2, −z+3/2; (ii) x−1, −y+1/2, z−1/2; (iii) −x+2, −y+1, −z+2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: FK2050).

References

  1. Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555–1573.
  2. Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
  3. Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838.
  4. Fierz, H. E., Blangey, D. & Blangey, L. (1949). Fundmental Processes of Dye Chemistry, translated from the fifth Austrian edition by P. W. Vittum, p. 323. Rochester, New York: Eastman Kodak Company.
  5. Grabowski, S. J. & Krygowski, T. M. (1985). Acta Cryst. C41, 1224–1226.
  6. Mrozek, R. & Glowiak, T. (2004). J. Chem. Crystallogr. 34, 153–157.
  7. Raza, A. R., Rubab, S. L. & Tahir, M. N. (2010). Acta Cryst. E66, o1484. [DOI] [PMC free article] [PubMed]
  8. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  9. Shore, J. (2002). Colorants and Auxiliaries, 2nd ed., Vol. 1, pp. 132, 216, 234, 296. Hampshire, England: Society of Dyers and Colourists.
  10. Stoe & Cie (2002). X-AREA and X-RED32 Stoe & Cie, Darmstadt, Germany.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812002474/fk2050sup1.cif

e-68-0o511-sup1.cif (14.6KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812002474/fk2050Isup2.hkl

e-68-0o511-Isup2.hkl (75.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812002474/fk2050Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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