Abstract
Notch signaling is involved in several cell lineage determination processes during embryonic development. Recently, we have shown that Sox9 is most likely a primary target gene of Notch1 signaling in embryonic stem cells (ESCs). By using our in vitro differentiation protocol for chondrogenesis from ESCs through embryoid bodies (EBs) together with our tamoxifen-inducible system to activate Notch1, we analyzed the function of Notch signaling and its induction of Sox9 during EB differentiation towards the chondrogenic lineage. Temporary activation of Notch1 during early stages of EB, when lineage determination occurs, was accompanied by rapid and transient Sox9 upregulation and resulted in induction of chondrogenic differentiation during later stages of EB cultivation. Using siRNA targeting Sox9, we knocked down and adjusted this early Notch1-induced Sox9 expression peak to non-induced levels, which led to reversion of Notch1-induced chondrogenic differentiation. In contrast, continuous Notch1 activation during EB cultivation resulted in complete inhibition of chondrogenic differentiation. Furthermore, a reduction and delay of cardiac differentiation observed in EBs after early Notch1 activation was not reversed by siRNA-mediated Sox9 knockdown. Our data indicate that Notch1 signaling has an important role during early stages of chondrogenic lineage determination by regulation of Sox9 expression.
Keywords: Notch, chondrogenesis, in vitro differentiation, mouse embryonic stem cells, Sox9, neural crest
The Notch signaling pathway is a highly conserved mechanism of intercellular communication influencing a wide variety of developmental processes throughout embryogenesis and adulthood.1 In mammals, one of the five ligands (Delta 1, 3, 4, Jagged1 and Jagged2) binds to one of the four Notch receptors (Notch1–4) on the surface of neighboring cells resulting in a conformational change of the receptor and cleavage of the extracellular domain near the membrane by a metalloprotease of the ADAM (a disintegrin and metalloprotease) family. The ligand-dependent cleavage step renders the truncated receptor sensitive to subsequent intramembrane cleavage by a γ-secretase multiprotein enzyme complex, thereby releasing the Notch intracellular domain (NICD) into the cytoplasm, allowing it to translocate into the nucleus. There it binds to the transcription factor recombination signal-binding protein for immunoglobulin J-κ (RBP-J, also referred to as RBPJk, CBF1, RBPSUH, SUH or CSL) and assembles into a transcriptional activation complex with co-activator proteins and histone acetylases, finally leading to the expression of downstream target genes.2
Several studies have indicated that Notch signaling has an important role during chondrogenesis and cartilage development.3, 4 Chondrocytes derived from the ectoderm and mesoderm make up cartilage elements during embryogenesis and adulthood. Neural crest cells, which arise from the dorsolateral edge of the neural plate, give rise to the facial element of the skeleton, and sclerotome arising from the paraxial mesoderm gives rise to structures of the axial skeleton. At the initiation of cartilage development, committed progenitor cells aggregate together to form pre-cartilaginous condensations, differentiate into proliferative and pre-hypertrophic chondrocytes that express cartilage-specific proteins to form the extracellular matrix and finally mature to hypertrophic chondrocytes, which are then replaced by bone. We have shown that cartilage development and enchondral ossification can be recapitulated during EB differentiation of embryonic stem cells (ESCs),5, 6 thus providing a model for in vitro mechanistic studies.
Components of the Notch signaling pathway are detected at early stages of chondrocyte development7 and Notch signaling is active.4 Several in vivo studies using models of conditional overexpression of NICD or conditional deletion of Notch core signaling components have further established an important role for Notch signaling in chondrogenesis.8, 9 Although activation of Notch signaling through a RBP-J-dependent pathway is required for induction of chondrogenesis in both adult and embryonic cells, Notch signaling needs to be inactivated for further maturation and development of the cartilage tissue.10, 11
How activated Notch mediates its influences on chondrogenesis at the molecular level is largely unknown. The most well-defined RBP-J-dependent target genes include members of the Hes/Hey family of basis helix-loop-helix transcription factors, which act as transcriptional repressors.12 Although Hes1 was implicated as an important target gene for Notch-mediated mesenchymal progenitor cell maintenance and suppression of chondrogenesis,9 it seems not to account for the specification of early progenitor cells towards the chondrogenic lineage. Recently, we have shown that Sox9 is a primary, most likely direct target gene of Notch in ESCs, as well as in ectodermal and mesodermal cells.13
Sox9 is a transcription factor which is expressed throughout all cartilage-generating regions and in mesodermal chondrocyte progenitors.14 Sox9 regulates the expression of several cartilage-specific matrix components like collagen II, IX, XI and aggrecan.15, 16, 17 During transition to the hypertrophic phase, Sox9 expression is downregulated. A heterozygous mutation of the Sox9 gene in humans leads to embryonic dysplasia in particular of the skeleton, known as campomelic syndrome, caused by a reduced Sox9 dose.18 Similarly, heterozygous Sox9 mutants in mice show analogous dysplasia and additionally abnormalities of cartilage progenitors.19 In mice, chimera Sox9-deficient cells do not give rise to any cartilage tissue.20 Conditional Sox9 knockouts in limb buds before mesenchymal condensations are formed results in the complete absence of cartilage and bones, whereas an inactivation of Sox9 after mesenchymal condensation leads to severe general chondrodysplasia.21 Furthermore, it was shown that Sox9 is also involved in the chondrogenic differentiation of neural crest cells, and that all osteo-chondroprogenitors are derived from Sox9-expressing precursors.22, 23
Despite the uncontested importance of Sox9 for determination and differentiation of chondrocytes and osteocytes, the regulation of Sox9 expression remains rather unclear. Recent evidence suggests that Sox9 is regulated by Hox genes during limb bud development.24 Besides cell-intrinsic and cell type-dependent transcription factors, cell-extrinsic signals are of special importance for chondrocyte differentiation. Our analyses of in vitro differentiated Sox9 knockout embryonic stem (ES) cells clearly confirm this, as the function of Sox9 was not cell autonomous during mesenchymal condensation formation.25
To examine the role of Sox9 for Notch1-induced effects during chondrocyte development, we used our recently generated murine ES cell line EB5-NERT26 that expresses a 4-hydroxy-tamoxifen (OHT)-inducible form of the Notch1 intracellular domain. In the absence of OHT, the fusion protein (NERT27) consisting of NICD and the tamoxifen-sensitive human estrogen receptor (ERT) is kept in the cytoplasm by binding of HSP90 to the ERT part of the protein (Figure 1a). Upon addition of OHT, the NERT fusion protein translocates to the nucleus and transactivates Notch1 target genes by binding to the transcriptional repressor RBP-J and converting it into a transcriptional activator (Figure 1a and Supplementary Video S1).27 This system has the advantage that effects of Notch signaling can be studied in a well-defined temporarily regulated manner and in the absence of protein synthesis. EB5-NERT cells were differentiated through EBs, and Notch1 signaling was activated by OHT at specific time points during EB development. Transient activation of Notch1 signaling during early stages of cell commitment resulted in upregulation of Sox9 and induction of chondrogenic differentiation. Notch1-induced chondrogenic differentiation was specifically reversed to wild-type levels by knocking down the Sox9 level using siRNA targeted against Sox9. Our results show that Sox9 is a critical mediator of Notch1-induced commitment towards the chondrogenic lineage.
Results
Transient Notch1 signaling at an early stage of ESC differentiation induces chondrogenesis
To investigate the role of Notch1 activation during chondrogenic differentiation of ES cells in vitro, EB5-NERT ES cells that express an OHT-inducible form of the Notch1 intracellular domain (Figure 1a and Supplementary Video S1) were grown for 2 days in hanging drops (0–2 days) for embryoid body (EB) formation. EBs were further cultivated 3 days in suspension (2–5 days), plated at 5 days and cultured for another 34 days (5+34 days). Notch1 signaling was temporarily activated by OHT application during different time windows (0–2, 2–5 days) or continuously from day 2 up to 34 days after EB plating (2–5+34 days). Transient Notch1 activation during early stages of cultivation before EB plating (0–2 and 2–5 days) resulted in an increased number of cartilage nodules from 5+28 up to 5+34 days as indicated by Alcian blue staining (Figure 1b). During the first 28 days after EB plating, only a small number of nodules was detectable and the number of nodules strongly increased at 5+34 days. The induction of Notch1 signaling from 0 to 2 days led to earlier formation and slightly higher numbers of cartilage nodules compared with induction from 2 to 5 days (Figure 1b). In contrast, continuous Notch1 activation completely inhibited the formation of Alcian blue-positive cartilage nodules during the entire differentiation period (Figure 1b). Immunostaining for collagen type II, the characteristic cartilage matrix protein, confirmed that during in vitro differentiation of NERT ES cells, cartilage nodules developed in control (Figure 1c, I–III) and transiently Notch1-activated EB cultures, from 0 to 2 days (Figure 1c, IV–VI) and 2–5 days (Figure 1c, VII–IX), respectively, whereas only collagen type II-positive fibers but no nodules were found when Notch1 was activated continuously (Figure 1c, X–XII). As the highest induction of chondrogenic differentiation was achieved when Notch1 was activated from days 0 to 2 during EB differentiation, during early commitment, the following experiments were carried out under these conditions.
Induction of chondrogenesis by activated Notch1 is mediated by upregulation of Sox9
Recently, we have shown that Notch1 signaling upregulates Sox9, an essential transcription factor involved in chondrogenesis, in ESCs and ectodermal, as well as in mesodemal progenitor cells.13 Thus, we reasoned that Sox9 may be involved in the induction of chondrogenesis by activated Notch1. To analyze this further, we first determined induction of Sox9 expression by Notch1 during EB differentiation. In line with our previous results,13 we found that Notch1 activation resulted in immediate upregulation of Sox9 expression in ESCs also in the presence of the protein synthesis inhibitor cycloheximide (CHX) used at a concentration and under conditions previously established to inhibit protein synthesis (Figure 2a), suggesting Sox9 to be directly targeted by Notch signaling. Supporting this idea, we have recently shown the potential binding sites of RBP-J within the Sox9 promoter.13, 28 Sox9 was highly inducible by activated Notch1 during early EB differentiation, but not at late time points of differentiation (day 10; Figure 2b). Furthermore, to show the direct nature of Sox9 regulation by Notch1, we used luciferase reporter constructs that were transiently transfected into ES cells. To this end, we mutated the two potential RBP-J-binding sites located approximately +40 bp (BS1) and −325 bp (BS2) relative to the transcription start site of Sox9 (Figure 2c). When BS1 was mutated, the basic expression of the reporter (i.e., −OHT) was increased, most likely driven by the lack of repression of RBP-J. At the same time, the expression upon Notch1 activation was reduced resulting in a decreased induction compared with the wild-type Sox9 promoter (Figure 2c). The same overall effects, but even stronger, were observed when BS2 was mutated (Figure 2c). However, a slight inducibility of the Sox9 promoter remained in both mutants, even if this did not seem to be statistically significant. Taken together, these results revealed an important role for both RBP-J-binding sites in Notch1-mediated Sox9 upregulation, possibly acting in a synergistic manner.
Next, we sought to dissect the role of Notch1-induced upregulation of Sox9 expression during chondrogenic differentiation from ESCs. To this end, we used a siRNA-mediated Sox9 knockdown to control Sox9 levels, which resulted in decreased Sox9 expression close to control levels (Figure 3). Manipulating the Sox9 expression levels back to control levels during Notch1 activation at an early stage of EB cultivation (0–2 days) had a strong influence on the formation of cartilage nodules in EBs from 5+14 days up to 5+49 days as analyzed by Alcian blue staining and real-time PCR for collagen type II (Figure 4). After Notch1 activation, the number of nodules increased significantly in comparison with the control after EB plating (Figure 4a). Knockdown of Sox9 expression reversed this inductive effect back to control levels during the same time periods (Figure 4a), reaching values close to normal levels of chondrogenic differentiation. Real-time PCR for collagen type II mRNA during EB differentiation showed that activation of Notch1 signaling during days 0–2 of EB cultivation resulted in a slight upregulation of collagen type II at the cultivation time when most nodules were detected (5+28 up to 5+34 days), which was reverted back to control levels by Sox9-specific siRNA (Figure 4b).
Induction of mesenchymal condensations by activated Notch1 is mediated by upregulation of Sox9
To test whether induction of chondrogenic differentiation is due to an enhanced number of pre-chondrogenic condensations, we analyzed the formation of condensations by PNA (peanut agglutinin) staining. Pre-chondrogenic condensations were present in all EB cultures mainly at 5+14 days (Figure 5a). After 5+21 days, condensations were no longer unambiguously detectable. When we counted the number of condensations in the control and after Notch1 activation, as well as after Sox9 siRNA-mediated knockdown, we found that the number of condensations was clearly enhanced after Notch1 activation and went down to normal numbers after Sox9 knockdown (Figure 5b).
Notch1-induced Sox9 upregulation is not involved in Notch1-mediated cardiac muscle repression
We along with others have shown earlier26, 29 that activated Notch1 blocks cardiac muscle differentiation of ESCs. Sox9 is expressed in the developing heart, where it influences epithelial–mesenchymal transitions and ECM generation but a role for cardiac muscle development has not been described. To analyze whether preventing Notch1-mediated upregulation of Sox9 during early ESC differentiation would specifically affect cardiac differentiation, we knocked down Notch1-induced Sox9 expression and analyzed the differentiating cultures for development of beating cardiac muscle cells. As shown in Figure 6a, activation of Notch1 signaling strongly repressed cardiac muscle differentiation in line with our previous results. In the presence of OHT to activate Notch signaling throughout the entire differentiation, no beating cardiomyocytes were observed. When Notch1 signaling was temporarily activated from days 0 to 2, cardiac development was severely reduced and delayed for 15 days. Activating Notch1 signaling during days 2 to 5 also decreased and further delayed cardiac development (Figure 6a). However, knockdown of Sox9 during Notch1 activation by OHT did not revert Notch1-induced cardiac muscle repression, suggesting that a Sox9-independent mechanism is involved in mediating the Notch1-induced block of cardiac muscle differentiation (Figure 6b).
Discussion
In this study, we have provided evidence that Notch1 signaling regulates cartilage formation from ESCs through Sox9. Using an inducible form of activated Notch1, Notch1 signaling was activated at certain stages during in vitro chondrogenic development of ESCs. Continuous Notch1 signaling resulted in a complete block of chondrogenic differentiation, whereas activation of Notch1 signaling at the earliest time of ESC differentiation, when differentiation into the germ layers is initiated, and later during the establishment of the germ layers, caused increased chondrocyte formation. These data suggest that Notch1 signaling influences cell lineage commitment during germ layer and chondrocyte specification, but has a negative influence on chondrogenic differentiation. Early Notch1 activation was paralleled by an increase in Sox9 expression. Knockdown of this early Sox9 expression peak reverted Notch1-induced chondrocyte development back to control levels, arguing that Notch1 regulation of germ layer and chondrocyte specification is mediated by Sox9.
Notch1 activation during ESC germ layer specification enhances ES cell differentiation into the cartilage in vitro
In embryogenesis, chondrocytes arise from sclerotomal cells of the somitic mesoderm, the somitomeres of the hindbrain or mesectodermal cells of neural crest. EBs recapitulate several aspects of early development including germ layer formation and further differentiation into cartilage through the mesoderm and neural crest.6, 30 Components of the Notch pathway are present in mammalian cells during early stages of embryogenesis31 and chondrogenesis,4, 7 and correct Notch signals are required for normal embryonic cartilage development.8 Several in vitro and in vivo studies using gain of function and loss of function reported that increased Notch signaling inhibits chondrogenic differentiation, whereas Notch pathway loss of function results in hypertrophic cartilage and decreased bone formation.4, 8, 9, 32 In accordance with these reports, continuously activated Notch1 signaling throughout EB differentiation entirely blocked cartilage development. Surprisingly however, transient Notch1 signaling at an early stage of ESC differentiation resulted in an increased chondrocyte development of murine ESCs, whereas in line with our previous work on mesodermal differentiation of ESCs26 cardiac muscle development was severely delayed and decreased. How can this apparent discrepancy be explained? During EB development, recapitulating early embryo formation in vivo, ESCs differentiate within the first day into the primitive ectoderm and then further between days 2 and 5 into the different germ layers. Although cardiac muscle cells are believed to be derived solely from mesodermal cells, chondrocytes are derived from the somitic mesoderm and mesectodermal cells of the neural crest. We along with others have conclusively shown that Notch signaling inhibits mesodermal differentiation and further cardiac muscle differentiation from mesodermal progenitors.33 In particular, activation of Notch signaling through inducible expression of the NICD in ES cells inhibits the generation of flk1-positive mesodermal progenitor and further cardiogenic muscle differentiation.26 Vice versa, blockage of Notch signaling in RBP-J-deficient ES cells results in enhanced mesodermal and cardiogenic specification34 and expression of a dominant negative mutant of RBP-J, incapable of DNA binding, forces cardiogenesis.29 Furthermore, in the presence of appropriate other signals that support neuronal differentiation, Notch signaling drives ESCs towards the neuro-ectodermal lineages.35 Within the ectoderm, Notch signaling has a critical role in neural crest formation.36 At the neural crest stage, Notch signaling through RBP-J is required for chondrogenic specification and early chondrogenic differentiation.10 This idea is supported by real-time PCR results showing an increased expression of the early neural crest marker genes Id3 and Snai1 upon Notch1 activation (Supplementary Figure 1). As Hes/Hey expression can still be activated by Notch1 during later chondrocytic differentiation (Supplementary Figure 2), the suppression of terminal chondrocyte maturation is possibly mediated by Hes/Hey proteins (Figure 7) Taken together, it is thus conceivable that activated Notch1 promotes ectodermal lineage entry in ESCs and further differentiation into neural crest-derived early chondrocytes, while blocking mesodermal and cardiac muscle development (Figure 7).
Notch1-induced chondrogenic lineage determination is mediated through Sox9
Among the genes that are most likely directly activated by Notch1 signaling in ESCs, we have recently identified Sox9.13 This idea of direct regulation of Sox9 by Notch1 was strongly supported by the luciferase experiments in this study using Sox9 promoter reporter constructs with mutated RBP-J-binding sites. Sox9 is an essential regulator of neural crest development and chondrogenesis and marks the progenitor population of chondrogenic cells.21, 37 A heterozygous mutation of Sox9 leads to the human skeletal dysmorphology syndrome, campomelic dysplasia, a very severe form of chondrodysplasia involving defects of all cartilage tissues.18 Similarly, skeletal abnormalities including craniofacial abnormalities and growth retardation are found in Alagille syndrome, an autosomal disorder caused by mutations of the Notch ligand Jagged1.38 In line with our previous results,13 we have shown here that Notch1 signaling upregulates Sox9 expression in ESCs under differentiation conditions favoring chondrocyte development. Knockdown of this early Sox9 expression peak reverted Notch1-induced effects on chondrocyte development back to control levels, supporting our model that Notch1 regulation of germ layer and chondrocyte specification is mediated by Sox9 (Figure 7). This view is further supported by recent experiments using an activated form of Notch, the γ-secretase inhibitor DAPT to block Notch signaling and shRNA against Sox9 to show that Sox9 is regulated by Notch signaling and required for Müller glial cell development in the mouse retina.39 Classically, many of the Notch functions are mediated by the Hes (Hairy/Enhancer of split) and Hey (also called Herp/Hesr/Hrt/CHF/gridlock) families of basic helix-loop-helix type transcriptional repressors.12 Hes and Hey are primary Notch effectors that affect cell-fate decisions by suppression of downstream target genes, such as tissue-specific regulators.12 During mesodermal development, Notch signaling as well as Hes and Hey proteins block the generation of mesodermally derived cardiac muscle cells by repressing cardiogenic transcription factors such as GATA4 and GATA6.40 Although Hes1 and Hes5 are both dispensable for cartilage formation,41 several observations indicate that Hes/Hey proteins negatively influence chondrocyte maturation. Along this line, Hey1 overexpression leads to chondrocyte hypertrophy in bone,42 and Hes1 and Hey1 suppress COL2A1 expression and chondrogenic differentiation.43 Taken together, this suggests that Notch signaling induces Sox9 expression, which promotes and initiates neural crest development and further differentiation into chondrocytes and at the same time induces expression of Hes/Hey transcriptional repressors that inhibit mesodermal and cardiac differentiation and terminal chondrocyte maturation (Figure 7).
Specification of neural crest and further of chondrocytes involves a genetic network including Notch, Wnt/FGF/RA and BMP signaling and transcriptional effectors such as Sox9, Id3 and Snail1 as major determinants.44, 45, 46 It is interesting that expressions of Id3 and of Snail1 are also regulated by Notch1 signaling,13 underscoring the importance of Notch1 in this process. Although Sox9 promotes neural crest and chondrocyte specification, Id3 and Snail1 act as inhibitors, further supporting our recently established model that Notch signaling determines lineage decisions and expansion of stem cells by directly activating both key lineage-specific transcription factors and their repressors.13 In conclusion, we propose that Notch signaling induces Sox9 expression, which promotes and initiates neural crest development and further differentiation along the chondrocyte lineage (Figure 7).
Materials and Methods
Cell culture and differentiation of EBs
The ES cell line EB5-NERT,26 expressing a OHT-inducible form of the Notch1 intracellular domain, was grown in maintenance medium consisting of DMEM (Invitrogen, Karlsruhe, Germany) supplemented with 15% FCS (Invitrogen), non-essential amino acids (Invitrogen, stock solution diluted 1:100), 2 mM -glutamine (Invitrogen), 5 × 10−5 M 2-mercaptoethanol (Serva, Heidelberg, Germany) and 5 ng/ml leukemia inhibitory factor (Millipore, Temecula, CA, USA) as described previously for line D3.6 The EB5-NERT clone had been generated from EB5 ES cells.26 We have previously shown that in vitro differentiation of control EB5 cells was not affected by OHT application.13 For differentiation of EB5-NERT cells, aliquots of 20 μl differentiation medium, consisting of DMEM (Invitrogen) supplemented with 20% FCS (Invitrogen), non-essential amino acids (Invitrogen, stock solution diluted 1:100), 2 mM -glutamine (Invitrogen), 5 × 10−5 M 2-mercaptoethanol (Serva) and containing 800 cells were cultivated as ‘hanging drops' for 2 days and, after transfer on bacteriological petri dishes, in suspension for additional 3 days.6 The 5-day-old EBs were plated separately onto gelatin (0.1%)-coated 24-well microwell plates for morphological analysis and Alcian blue staining; for RNA extraction and RT-PCR, 10 EBs were plated onto a 6-cm tissue culture plate; and for immunostaining, 10 EBs were plated onto 2-well (21.3 × 20 mm2) Lab-Tek chamber slides (Nunc, Wiesbaden, Germany). Alcian blue staining and PNA staining were performed as described previously.6, 25 Two days after EB plating, the medium was changed to low FCS medium supplemented with 0.2% FCS instead of 20%. All differentiation experiments were repeated at least three times. To confirm Sox9 as a direct target gene of Notch1 in mesodermal differentiation of EBs, differentiation was carried out as described previously.13 Blocking of protein synthesis was achieved by adding 50 μg/ml CHX for 4 h.
Transfection of EB5-NERT cells
Cells were transfected using 2 μl/ml DharmaFECT 1 transfection reagent (Dharmacon, Lafayette, CO, USA) and a 100 nM pool of siRNA targeting Sox9 (Thermo Scientific, Lafayette, CO, USA) or a 100 nM pool of non-targeting siRNA (Thermo Scientific), so-called negative or control siRNA. The siRNA was incubated with PCR grade H2O (Macherey and Nagel, Bonn, Germany) and DMEM (Invitrogen) in the ratio of 1:4:15 for 5 min at room temperature. DharmaFECT 1 transfection reagent (Dharmacon) was incubated with DMEM in the ratio of 1:49 for 5 min at room temperature. The two solutions were mixed afterwards and incubated for 20 min at room temperature. A defined number of cells was then cultivated as ‘hanging drops'6 after application of OHT (final concentration 1 μM).
Indirect immunostaining
EBs cultivated on chamber slides and rinsed two times with PBS were fixed for 5 min with methanol:acetone (7:3) at room temperature, washed three times with PBS again and incubated at 37 °C for 30 min with 10% goat serum. Specimens were then incubated for 1 h in a humidified chamber at 37 °C with the monoclonal antibody II-II-6B3 against collagen type II diluted 1:20 in PBS, which was obtained from the Developmental Studies Hybridoma Bank (University of Iowa, USA). After rinsing three times with PBS, slides were incubated for 45 min at 37 °C with FITC-labeled anti-mouse IgG (Dianova, Hamburg, Germany) and diluted 1:800 in PBS. Slides were washed three times in PBS and briefly in distilled water. Specimens were embedded in Vectashield mounting medium (Vector, Burlingame, CA, USA) and analyzed using the fluorescence microscope Axioskop (Zeiss, Oberkochen, Germany). Control slides incubated with the secondary antibody alone were included.
Quantitative measurement gene expression by RT-qPCR analysis
Samples of 10 EBs of different developmental stages up to 49 days after plating (5+49 days) were collected, washed two times with PBS, and total RNA was isolated and reverse transcribed as described previosuly.5 For quantitative RT–PCR, we used TaqMan probes specific for the gene of interest (TIB Molbiol, Berlin, Germany), which were labeled with 6-FAM and had tetramethylrhodamine as a quencher. Aliquots of 1 μl from the RT reactions were mixed with 19 μl master mix consisting of 0.4 μl TaqMan probe, 0.4 μl gene-specific primer (see Supplementary Table 1), 10 μl iQ Supermix (Bio-Rad, Munich, Germany) and 7.8 μl sterile, steam sterilized and DEPC-treated water (Roth, Karlsruhe, Germany) per probe. The thermal cycling was performed using an iCycler iQ thermal cycler running with software version 3.1. (Bio-Rad) according to the manufacturer's instructions and the following thermal conditions: 95 °C for 2 min followed by 50 cycles of 95 °C for 40 s, annealing temperature for 40 s (see Supplementary Table 1) and 72 °C for 40 s. Finally samples were heated to 95 °C for 1 min. For generation of standard curves, the PCR product was cloned into the vector pCR-TOPO (Invitrogen). Plasmid DNA was isolated using Qiagen-tip 100 anion-exchange columns (Qiagen, Hilden, Germany) and serially diluted in double-distilled water. Threshold cycles were adjusted to attain the highest possible correlation coefficient value for the standard curve provided by the manufacturer's software. According to their respective cycle numbers, the concentrations of unknown samples were deduced from the standard curve. Gene expression was determined relatively to expression of the house-keeping gene Gapdh. Initial experiments validating Sox9 as a Notch1 target gene (Figure 2), as well as Hes1, Hes5, Hey1 and Id3 measurements were carried out on a 7900HT Fast Real-Time PCR System (Applied Biosystems, Foster City, CA, USA) in 384-well PCR-plates (ABgene, Epsom, UK) using the TaqMan Gene Expression Assays-on-Demand assays Mm00448840_m1 (Sox9), Mm00492575_m1 (Id3) and Mm99999915_g1 (Gapdh) (Applied Biosystems) as described previously.13 Snai1 was measured using the Power SYBR green Master Mix (Applied Biosystems) with a primer concentration of 300 nM (sequences see Supplementary Table 1) on a 7900HT Fast Real-Time PCR System (Applied Bioystems).
Luciferase assays and reporter plasmids
A mouse Sox9 luciferase pGL3 reporter construct comprising 4 kb before and +315 bp after transcription start site were used for luciferase experiments (kindly provided by Dr. Peter Koopman, Brisbane, Australia).47 The potential RBP-J-binding sites located at approximately +40 bp and −325 bp were mutated from TGTGGGAG to TGACATCG and from TTCACACG to TGTGTCAG, respectively, using the Quick Change technique using the Phusion Hot Start II Taq polymerase (Finnzymes/Thermo Scientific). The primers used were 5′-GAAACTTCTGACATCGCGACAACTTTACCAGTTT-3′ (Sox9 BS1mut forward), 5′-AGTTGTCGCGATGTCAGAAGTTTCCAGGCAGTTC-3′ (Sox9 BS1mut reverse), 5′-CACATCGGTGTGTCAGGAGACCGTTCCAAAACTG-3′ (Sox9 BS2mut forward) and 5′-ACGGTCTCCTGACACACCGATGTGTGTGTGTGTG-3′ (Sox9 BS2mut reverse).
For transfection of luciferase reporter assays, 4 × 105 ESCs were seeded in the presence or absence of 500 nM OHT in 24-well plates and transfected 24 h later using Fugene HD according to the manufacturer's instructions (Roche Diagnostics, Mannheim, Germany) with 0.9 μg of the wild-type (Sox9-wt), BS1-mutated (Sox9-BS1mut) or BS2-mutated construct (Sox9-BS2mut) and 0.1 μg phRL-CMV plasmids (constitutive expression of Renilla luciferase for transfection efficiency control). Sixteen hours after transfection, measurements of luciferase activities were performed using the Dual Luciferase Kit (Promega, Madison, WI, USA) according to the manufacturer's instructions in a GloMax-96 Microplate Luminometer (Promega).
Data analysis and statistics
Data analysis was performed using the Sigma Plot 2000 software (Jandel, Corte Madeira, CA, USA). The Prism 5 software (GraphPad Software, La Jolla, CA, USA) and the R software (http://www.r-project.org) or SPSS 15 (http://www.SPSS.com; SPSS Inc., Chicago, IL, USA) were used for statistical analysis. For statistical analysis, one- or two-way analysis of variance was performed followed by Tukey's range test and Bonferroni's post-tests, respectively. Error bars present S.E.M. For statistical analysis of qPCR results, raw ΔCt values were used.
Acquisition and processing of images
Slides were analyzed using the fluorescence microscope Axioskop (Zeiss) equipped with a three CCD color video camera (Sony, Cologne, Germany) using the acquisition software Axiovision (Zeiss). Figures were assembled using the Corel Draw software (Corel, Ottawa, Canada).
Acknowledgments
We are very grateful to A Tiedtke and B Andresen for their skillful technical assistance and to Peter Koopman for providing the mouse Sox9 luciferase pGL3 reporter construct. The II-II 6B3 monoclonal antibody developed by TF Linsenmayer was obtained from the Developmental Studies Hybridoma Bank developed under the auspices of the NICHD and maintained by the University of Iowa, Department of Biological Sciences, Iowa City, IA52242. This work was supported by funding from the DFG SFB 415 project B8 to UJ and from Intermed Service GmbH, Geesthacht to JK and JR.
Author contributions
Ralf Haller: Collection and/or assembly of data, data analysis and interpretation, drafted manuscript and final approval of manuscript. Ralf Schwanbeck: Collection and/or assembly of data, data analysis and interpretation, provision of study materials, drafted and revised manuscript and final approval of manuscript. Simone Martini: Collection and/or assembly of data, provision of study materials, revised manuscript and final approval of manuscript. Kristina Bernoth: Collection and/or assembly of data, provision of study materials, revised manuscript and final approval of manuscript. Jan Kramer: Data analysis and interpretation, drafted manuscript, financial support and final approval of manuscript. Ursula Just: Concept and design, data analysis and interpretation, provision of study materials, drafted and revised manuscript, financial support and final approval of manuscript. Jürgen Rohwedel: Concept and design, data analysis and interpretation, financial support, drafted and revised manuscript and final approval of manuscript.
Glossary
- CHX
cycloheximide
- EB
embryoid body
- ERT
tamoxifen-sensitive human estrogen receptor
- ES
embryonic stem
- ESC
embryonic stem cell
- NICD
Notch intracellular domain
- OHT
4-hydroxy-tamoxifen
- NERT
fusion protein of the Notch intracellular domain and the tamoxifen-sensitive human estrogen receptor
- PNA
peanut agglutinin
- RBP-J
recombination signal-binding protein for immunoglobulin J-κ
The authors declare no conflict of interest.
Footnotes
Supplementary Information accompanies the paper on Cell Death and Differentiation website (http://www.nature.com/cdd)
Edited by R De Maria
Supplementary Material
References
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