Skip to main content
Nucleic Acids Research logoLink to Nucleic Acids Research
. 1979 Sep 11;7(1):121–134. doi: 10.1093/nar/7.1.121

Pseudouridylation of yeast ribosomal precursor RNA.

R C Brand, J Klootwijk, C P Sibum, R J Planta
PMCID: PMC328000  PMID: 114983

Abstract

The pseudouridylation of ribosomal RNA of Saccharomyces carlsbergensis was investigated with respect to its timing during the maturation of rRNA and its sequence specificity. Analysis of 37-S RNA, the common precursor to 17-S, 5.8-S and 26-S rRNA and most probably the primary ribosomal transcript, shows that this RNA molecule contains already most if not all of the 36-37 pseudouridine residues found in the mature rRNAs. Thus pseudouridylation is, like 2'-0-ribosemethylation, an early event in the maturation of rRNA, taking place immediately after, or even during, transcription. The data presented show that the non-conserved sequences of 37-S precursor rRNA contain very few pseudouridine residues if any. The pseudouridine residues within the rRNA sequences are apparently clustered to a certain degree as can inferred from the occurrence of a single oligonucleotide containing 3 pseudouridines, which was obtained by digestion of 26-S rRNA with ribonuclease T1.

Full text

PDF
121

Images in this article

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Brand R. C., Klootwijk J., Planta R. J., Maden B. E. Biosynthesis of a hypermodified nucleotide in Saccharomyces carlsbergensis 17S and HeLa-cell 18S ribosomal ribonucleic acid. Biochem J. 1978 Jan 1;169(1):71–77. doi: 10.1042/bj1690071. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Brand R. C., Klootwijk J., Van Steenbergen T. J., De Kok A. J., Planta R. J. Secondary methylation of yeast ribosomal precursor RNA. Eur J Biochem. 1977 May 2;75(1):311–318. doi: 10.1111/j.1432-1033.1977.tb11531.x. [DOI] [PubMed] [Google Scholar]
  3. Brand R. C., Planta R. J. The molecular weights of yeast ribosomal precursor RNAs. Mol Biol Rep. 1975 Dec;2(4):321–325. doi: 10.1007/BF00357019. [DOI] [PubMed] [Google Scholar]
  4. Brownlee G. G., Sanger F. Chromatography of 32P-labelled oligonucleotides on thin layers of DEAE-cellulose. Eur J Biochem. 1969 Dec;11(2):395–399. doi: 10.1111/j.1432-1033.1969.tb00786.x. [DOI] [PubMed] [Google Scholar]
  5. Caboche M., Bachellerie J. P. RNA methylation and control of eukaryotic RNA biosynthesis. Effects of cycloleucine, a specific inhibitor of methylation, on ribosomal RNA maturation. Eur J Biochem. 1977 Mar 15;74(1):19–29. doi: 10.1111/j.1432-1033.1977.tb11362.x. [DOI] [PubMed] [Google Scholar]
  6. Choi Y. C., Busch H. Modified nucleotides in T1 RNase oligonucleotides of 18S ribosomal RNA of the Novikoff hepatoma. Biochemistry. 1978 Jun 27;17(13):2551–2560. doi: 10.1021/bi00606a015. [DOI] [PubMed] [Google Scholar]
  7. De Jonge P., Klootwijk J., Planta R. J. Terminal nucleotide sequences of 17-S ribosomal RNA and its immediate precursor 18-S RNA in yeast. Eur J Biochem. 1977 Jan;72(2):361–369. doi: 10.1111/j.1432-1033.1977.tb11260.x. [DOI] [PubMed] [Google Scholar]
  8. Grummt I. The effects of histidine starvation on the methylation of ribosomal RNA. Eur J Biochem. 1977 Sep 15;79(1):133–141. doi: 10.1111/j.1432-1033.1977.tb11791.x. [DOI] [PubMed] [Google Scholar]
  9. Hughes D. G., Hughes S., Maden B. E. The pseudouridine content of hela cell ribosomal RNA. FEBS Lett. 1976 Dec 31;72(2):304–308. doi: 10.1016/0014-5793(76)80992-1. [DOI] [PubMed] [Google Scholar]
  10. Hughes D. G., Maden B. E. The pseudouridine contents of the ribosomal ribonucleic acids of three vertebrate species. Numerical correspondence between pseudouridine residues and 2'-O-methyl groups is not always conserved. Biochem J. 1978 Jun 1;171(3):781–786. doi: 10.1042/bj1710781. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Jeanteur P., Amaldi F., Attardi G. Partial sequence analysis of ribosomal RNA from HeLa cells. II. Evidence for sequences of non-ribosmal type in 45 and 32 s ribosomal RNA precursors. J Mol Biol. 1968 May 14;33(3):757–775. doi: 10.1016/0022-2836(68)90318-5. [DOI] [PubMed] [Google Scholar]
  12. Khan M. S., Salim M., Maden B. E. Extensive homologies between the methylated nucleotide sequences in several vertebrate ribosomal ribonucleic acids. Biochem J. 1978 Mar 1;169(3):531–542. doi: 10.1042/bj1690531. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Klootwijk J., Klein I., Grivell L. A. Minimal post-transcriptional modification of yeast mitochondrial ribosomal RNA. J Mol Biol. 1975 Sep 25;97(3):337–350. doi: 10.1016/s0022-2836(75)80044-1. [DOI] [PubMed] [Google Scholar]
  14. Klootwijk J., Planta R. J. Analysis of the methylation sites in yeast ribosomal RNA. Eur J Biochem. 1973 Nov 15;39(2):325–333. doi: 10.1111/j.1432-1033.1973.tb03130.x. [DOI] [PubMed] [Google Scholar]
  15. Maden B. E.H., Forbes J. Standard and non standard products in combined T(1) plus pancreatic RNAase fingerprints of HeLa cell rRNA and its precursors. FEBS Lett. 1972 Dec 15;28(3):289–292. doi: 10.1016/0014-5793(72)80733-6. [DOI] [PubMed] [Google Scholar]
  16. Maden B. E., Salim M. The methylated nucleotide sequences in HELA cell ribosomal RNA and its precursors. J Mol Biol. 1974 Sep 5;88(1):133–152. doi: 10.1016/0022-2836(74)90299-x. [DOI] [PubMed] [Google Scholar]
  17. Perry R. P. Processing of RNA. Annu Rev Biochem. 1976;45:605–629. doi: 10.1146/annurev.bi.45.070176.003133. [DOI] [PubMed] [Google Scholar]
  18. Retèl J., Planta R. J. The investigation of the ribosomal RNA sites in yeast DNA by the hybridization technique. Biochim Biophys Acta. 1968 Dec 17;169(2):416–429. doi: 10.1016/0005-2787(68)90050-6. [DOI] [PubMed] [Google Scholar]
  19. Rubin G. M. The nucleotide sequence of Saccharomyces cerevisiae 5.8 S ribosomal ribonucleic acid. J Biol Chem. 1973 Jun 10;248(11):3860–3875. [PubMed] [Google Scholar]
  20. Sanger F., Brownlee G. G., Barrell B. G. A two-dimensional fractionation procedure for radioactive nucleotides. J Mol Biol. 1965 Sep;13(2):373–398. doi: 10.1016/s0022-2836(65)80104-8. [DOI] [PubMed] [Google Scholar]
  21. Vaughan M. H., Jr, Soeiro R., Warner J. R., Darnell J. E., Jr The effects of methionine deprivation on ribosome synthesis in HeLa cells. Proc Natl Acad Sci U S A. 1967 Oct;58(4):1527–1534. doi: 10.1073/pnas.58.4.1527. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Volckaert G., Jou W. M., Fiers W. Analysis of 32P-labeled bacteriophage MS2 RNA by a mini-fingerprinting procedure. Anal Biochem. 1976 May 7;72:433–446. doi: 10.1016/0003-2697(76)90551-0. [DOI] [PubMed] [Google Scholar]
  23. van den Bos R. C., Klootwijk J., Planta R. J. Structural comparison of 17 S ribosomal RNA of yeast and its immediate precursor, 18 S RNA. FEBS Lett. 1972 Jul 15;24(1):93–97. doi: 10.1016/0014-5793(72)80834-2. [DOI] [PubMed] [Google Scholar]

Articles from Nucleic Acids Research are provided here courtesy of Oxford University Press

RESOURCES