Skip to main content
PMC home page
Nucleic Acids Research logoLink to Nucleic Acids Research
. 1991 Jul 25;19(14):3795–3798. doi: 10.1093/nar/19.14.3795

A reappraisal of non-consensus mRNA splice sites.

I J Jackson 1
PMCID: PMC328465  PMID: 1713664

Full text

PDF
3795

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Aebi M., Hornig H., Weissmann C. 5' cleavage site in eukaryotic pre-mRNA splicing is determined by the overall 5' splice region, not by the conserved 5' GU. Cell. 1987 Jul 17;50(2):237–246. doi: 10.1016/0092-8674(87)90219-4. [DOI] [PubMed] [Google Scholar]
  2. Ahearn J. M., Jr, Bartolomei M. S., West M. L., Cisek L. J., Corden J. L. Cloning and sequence analysis of the mouse genomic locus encoding the largest subunit of RNA polymerase II. J Biol Chem. 1987 Aug 5;262(22):10695–10705. [PubMed] [Google Scholar]
  3. Baron A., Featherstone M. S., Hill R. E., Hall A., Galliot B., Duboule D. Hox-1.6: a mouse homeo-box-containing gene member of the Hox-1 complex. EMBO J. 1987 Oct;6(10):2977–2986. doi: 10.1002/j.1460-2075.1987.tb02603.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Benedetto M. T., Anzai Y., Gordon J. W. Isolation and analysis of the mouse genomic sequence encoding Cu(2+)-Zn2+ superoxide dismutase. Gene. 1991 Mar 15;99(2):191–195. doi: 10.1016/0378-1119(91)90126-v. [DOI] [PubMed] [Google Scholar]
  5. Boss J. M., Mengler R., Okada K., Auffray C., Strominger J. L. Sequence analysis of the human major histocompatibility gene SX alpha. Mol Cell Biol. 1985 Oct;5(10):2677–2683. doi: 10.1128/mcb.5.10.2677. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Breathnach R., Chambon P. Organization and expression of eucaryotic split genes coding for proteins. Annu Rev Biochem. 1981;50:349–383. doi: 10.1146/annurev.bi.50.070181.002025. [DOI] [PubMed] [Google Scholar]
  7. Bäumlein H., Pustell J., Wobus U., Case S. T., Kafatos F. C. The 3' ends of two genes in the Balbiani ring c locus of Chironomus thummi. J Mol Evol. 1986;24(1-2):72–82. doi: 10.1007/BF02099953. [DOI] [PubMed] [Google Scholar]
  8. Citri Y., Colot H. V., Jacquier A. C., Yu Q., Hall J. C., Baltimore D., Rosbash M. A family of unusually spliced biologically active transcripts encoded by a Drosophila clock gene. Nature. 1987 Mar 5;326(6108):42–47. doi: 10.1038/326042a0. [DOI] [PubMed] [Google Scholar]
  9. Cool D. E., MacGillivray R. T. Characterization of the human blood coagulation factor XII gene. Intron/exon gene organization and analysis of the 5'-flanking region. J Biol Chem. 1987 Oct 5;262(28):13662–13673. [PubMed] [Google Scholar]
  10. Daniel V., Sharon R., Tichauer Y., Sarid S. Mouse glutathione S-transferase Ya subunit: gene structure and sequence. DNA. 1987 Aug;6(4):317–324. doi: 10.1089/dna.1987.6.317. [DOI] [PubMed] [Google Scholar]
  11. Degen S. J., Davie E. W. Nucleotide sequence of the gene for human prothrombin. Biochemistry. 1987 Sep 22;26(19):6165–6177. doi: 10.1021/bi00393a033. [DOI] [PubMed] [Google Scholar]
  12. Diehl H. J., Schaich M., Budzinski R. M., Stoffel W. Individual exons encode the integral membrane domains of human myelin proteolipid protein. Proc Natl Acad Sci U S A. 1986 Dec;83(24):9807–9811. doi: 10.1073/pnas.83.24.9807. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Dodgson J. B., Engel J. D. The nucleotide sequence of the adult chicken alpha-globin genes. J Biol Chem. 1983 Apr 10;258(7):4623–4629. [PubMed] [Google Scholar]
  14. Dush M. K., Sikela J. M., Khan S. A., Tischfield J. A., Stambrook P. J. Nucleotide sequence and organization of the mouse adenine phosphoribosyltransferase gene: presence of a coding region common to animal and bacterial phosphoribosyltransferases that has a variable intron/exon arrangement. Proc Natl Acad Sci U S A. 1985 May;82(9):2731–2735. doi: 10.1073/pnas.82.9.2731. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Erbil C., Niessing J. The primary structure of the duck alpha D-globin gene: an unusual 5' splice junction sequence. EMBO J. 1983;2(8):1339–1343. doi: 10.1002/j.1460-2075.1983.tb01589.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Gorman S. D., Tourvieille B., Parnes J. R. Structure of the mouse gene encoding CD4 and an unusual transcript in brain. Proc Natl Acad Sci U S A. 1987 Nov;84(21):7644–7648. doi: 10.1073/pnas.84.21.7644. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Hagen F. S., Gray C. L., O'Hara P., Grant F. J., Saari G. C., Woodbury R. G., Hart C. E., Insley M., Kisiel W., Kurachi K. Characterization of a cDNA coding for human factor VII. Proc Natl Acad Sci U S A. 1986 Apr;83(8):2412–2416. doi: 10.1073/pnas.83.8.2412. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Hendriks W., Leunissen J., Nevo E., Bloemendal H., de Jong W. W. The lens protein alpha A-crystallin of the blind mole rat, Spalax ehrenbergi: evolutionary change and functional constraints. Proc Natl Acad Sci U S A. 1987 Aug;84(15):5320–5324. doi: 10.1073/pnas.84.15.5320. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Hidaka Y., Tarlé S. A., O'Toole T. E., Kelley W. N., Palella T. D. Nucleotide sequence of the human APRT gene. Nucleic Acids Res. 1987 Nov 11;15(21):9086–9086. doi: 10.1093/nar/15.21.9086. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Hodge M. R., Cumsky M. G. Splicing of a yeast intron containing an unusual 5' junction sequence. Mol Cell Biol. 1989 Jun;9(6):2765–2770. doi: 10.1128/mcb.9.6.2765. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Huiet L., Giles N. H. The qa repressor gene of Neurospora crassa: wild-type and mutant nucleotide sequences. Proc Natl Acad Sci U S A. 1986 May;83(10):3381–3385. doi: 10.1073/pnas.83.10.3381. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Jackson I. J., Chambers D. M., Budd P. S., Johnson R. The tyrosinase-related protein-1 gene has a structure and promoter sequence very different from tyrosinase. Nucleic Acids Res. 1991 Jul 25;19(14):3799–3804. doi: 10.1093/nar/19.14.3799. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Jacob M., Gallinaro H. The 5' splice site: phylogenetic evolution and variable geometry of association with U1RNA. Nucleic Acids Res. 1989 Mar 25;17(6):2159–2180. doi: 10.1093/nar/17.6.2159. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Jhiang S. M., Riggs A. F. The structure of the gene encoding chain c of the hemoglobin of the earthworm, Lumbricus terrestris. J Biol Chem. 1989 Nov 15;264(32):19003–19008. [PubMed] [Google Scholar]
  25. Katinakis P., Verma D. P. Nodulin-24 gene of soybean codes for a peptide of the peribacteroid membrane and was generated by tandem duplication of a sequence resembling an insertion element. Proc Natl Acad Sci U S A. 1985 Jun;82(12):4157–4161. doi: 10.1073/pnas.82.12.4157. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. King C. R., Piatigorsky J. Alternative RNA splicing of the murine alpha A-crystallin gene: protein-coding information within an intron. Cell. 1983 Mar;32(3):707–712. doi: 10.1016/0092-8674(83)90056-9. [DOI] [PubMed] [Google Scholar]
  27. Kiss I., Deák F., Holloway R. G., Jr, Delius H., Mebust K. A., Frimberger E., Argraves W. S., Tsonis P. A., Winterbottom N., Goetinck P. F. Structure of the gene for cartilage matrix protein, a modular protein of the extracellular matrix. Exon/intron organization, unusual splice sites, and relation to alpha chains of beta 2 integrins, von Willebrand factor, complement factors B and C2, and epidermal growth factor. J Biol Chem. 1989 May 15;264(14):8126–8134. [PubMed] [Google Scholar]
  28. Kozasa T., Itoh H., Tsukamoto T., Kaziro Y. Isolation and characterization of the human Gs alpha gene. Proc Natl Acad Sci U S A. 1988 Apr;85(7):2081–2085. doi: 10.1073/pnas.85.7.2081. [DOI] [PMC free article] [PubMed] [Google Scholar]
  29. Kropp K., Gulick J., Robbins J. A canonical sequence organization at the 5'-end of the myosin heavy chain genes. J Biol Chem. 1986 May 15;261(14):6613–6618. [PubMed] [Google Scholar]
  30. Kulesh D. A., Oshima R. G. Complete structure of the gene for human keratin 18. Genomics. 1989 Apr;4(3):339–347. doi: 10.1016/0888-7543(89)90340-6. [DOI] [PubMed] [Google Scholar]
  31. Larson R. G., Henning D., Haidar M. A., Jhiang S., Lin W. L., Zhang W. W., Busch H. Genomic structure of the human proliferating cell nucleolar protein P120. Cancer Commun. 1990;2(2):63–71. doi: 10.3727/095535490820874704. [DOI] [PubMed] [Google Scholar]
  32. Levanon D., Lieman-Hurwitz J., Dafni N., Wigderson M., Sherman L., Bernstein Y., Laver-Rudich Z., Danciger E., Stein O., Groner Y. Architecture and anatomy of the chromosomal locus in human chromosome 21 encoding the Cu/Zn superoxide dismutase. EMBO J. 1985 Jan;4(1):77–84. doi: 10.1002/j.1460-2075.1985.tb02320.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  33. Liaw C. W., Zamoyska R., Parnes J. R. Structure, sequence, and polymorphism of the Lyt-2 T cell differentiation antigen gene. J Immunol. 1986 Aug 1;137(3):1037–1043. [PubMed] [Google Scholar]
  34. Lu Q., Wolfe K. H., McConnell D. J. Molecular cloning of multiple bovine aspartyl protease genes. Gene. 1988 Nov 15;71(1):135–146. doi: 10.1016/0378-1119(88)90085-6. [DOI] [PubMed] [Google Scholar]
  35. Molina M. I., Kropp K. E., Gulick J., Robbins J. The sequence of an embryonic myosin heavy chain gene and isolation of its corresponding cDNA. J Biol Chem. 1987 May 15;262(14):6478–6488. [PubMed] [Google Scholar]
  36. Morohashi K., Sogawa K., Omura T., Fujii-Kuriyama Y. Gene structure of human cytochrome P-450(SCC), cholesterol desmolase. J Biochem. 1987 Apr;101(4):879–887. doi: 10.1093/oxfordjournals.jbchem.a121955. [DOI] [PubMed] [Google Scholar]
  37. Mount S. M. A catalogue of splice junction sequences. Nucleic Acids Res. 1982 Jan 22;10(2):459–472. doi: 10.1093/nar/10.2.459. [DOI] [PMC free article] [PubMed] [Google Scholar]
  38. Müller R. M., Taguchi H., Shibahara S. Nucleotide sequence and organization of the rat heme oxygenase gene. J Biol Chem. 1987 May 15;262(14):6795–6802. [PubMed] [Google Scholar]
  39. Nalbantoglu J., Phear G. A., Meuth M. Nucleotide sequence of hamster adenine phosphoribosyl transferase (aprt) gene. Nucleic Acids Res. 1986 Feb 25;14(4):1914–1914. doi: 10.1093/nar/14.4.1914. [DOI] [PMC free article] [PubMed] [Google Scholar]
  40. Quan F., Forte M. A. Two forms of Drosophila melanogaster Gs alpha are produced by alternate splicing involving an unusual splice site. Mol Cell Biol. 1990 Mar;10(3):910–917. doi: 10.1128/mcb.10.3.910. [DOI] [PMC free article] [PubMed] [Google Scholar]
  41. Roberts R. J., O'Neill K. E., Yen C. T. DNA sequences from the adenovirus 2 genome. J Biol Chem. 1984 Nov 25;259(22):13968–13975. [PubMed] [Google Scholar]
  42. Ruby S. W., Abelson J. Pre-mRNA splicing in yeast. Trends Genet. 1991 Mar;7(3):79–85. doi: 10.1016/0168-9525(91)90276-V. [DOI] [PubMed] [Google Scholar]
  43. Ruiz-Opazo N., Nadal-Ginard B. Alpha-tropomyosin gene organization. Alternative splicing of duplicated isotype-specific exons accounts for the production of smooth and striated muscle isoforms. J Biol Chem. 1987 Apr 5;262(10):4755–4765. [PubMed] [Google Scholar]
  44. Schneuwly S., Kuroiwa A., Baumgartner P., Gehring W. J. Structural organization and sequence of the homeotic gene Antennapedia of Drosophila melanogaster. EMBO J. 1986 Apr;5(4):733–739. doi: 10.1002/j.1460-2075.1986.tb04275.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  45. Selby M. J., Edwards R., Sharp F., Rutter W. J. Mouse nerve growth factor gene: structure and expression. Mol Cell Biol. 1987 Sep;7(9):3057–3064. doi: 10.1128/mcb.7.9.3057. [DOI] [PMC free article] [PubMed] [Google Scholar]
  46. Senapathy P., Shapiro M. B., Harris N. L. Splice junctions, branch point sites, and exons: sequence statistics, identification, and applications to genome project. Methods Enzymol. 1990;183:252–278. doi: 10.1016/0076-6879(90)83018-5. [DOI] [PubMed] [Google Scholar]
  47. Shapiro M. B., Senapathy P. RNA splice junctions of different classes of eukaryotes: sequence statistics and functional implications in gene expression. Nucleic Acids Res. 1987 Sep 11;15(17):7155–7174. doi: 10.1093/nar/15.17.7155. [DOI] [PMC free article] [PubMed] [Google Scholar]
  48. Shibahara S., Kubo T., Perski H. J., Takahashi H., Noda M., Numa S. Cloning and sequence analysis of human genomic DNA encoding gamma subunit precursor of muscle acetylcholine receptor. Eur J Biochem. 1985 Jan 2;146(1):15–22. doi: 10.1111/j.1432-1033.1985.tb08614.x. [DOI] [PubMed] [Google Scholar]
  49. Vize P. D., Wells J. R. Isolation and characterization of the porcine growth hormone gene. Gene. 1987;55(2-3):339–344. doi: 10.1016/0378-1119(87)90294-0. [DOI] [PubMed] [Google Scholar]
  50. Wolf D., Rotter V. Inactivation of p53 gene expression by an insertion of Moloney murine leukemia virus-like DNA sequences. Mol Cell Biol. 1984 Jul;4(7):1402–1410. doi: 10.1128/mcb.4.7.1402. [DOI] [PMC free article] [PubMed] [Google Scholar]
  51. Zuker C. S., Cowman A. F., Rubin G. M. Isolation and structure of a rhodopsin gene from D. melanogaster. Cell. 1985 Apr;40(4):851–858. doi: 10.1016/0092-8674(85)90344-7. [DOI] [PubMed] [Google Scholar]
  52. van den Heuvel R., Hendriks W., Quax W., Bloemendal H. Complete structure of the hamster alpha A crystallin gene. Reflection of an evolutionary history by means of exon shuffling. J Mol Biol. 1985 Sep 20;185(2):273–284. doi: 10.1016/0022-2836(85)90403-6. [DOI] [PubMed] [Google Scholar]

Articles from Nucleic Acids Research are provided here courtesy of Oxford University Press

RESOURCES