Abstract
Numeric sex chromosome imbalances, or aneuploidies, are present in several pathological conditions including tumors, abnormal gestations, and clinical syndromes. Here we report a method to identify karyotypic imbalances of the X and Y chromosomes using the polymerase chain reaction (PCR). The polymerase chain reaction was used to quantitatively coamplify the sex chromosome linked genes ZFX and ZFY. Quantitation was facilitated by 1) use of a single primer set which recognizes both templates, 2) incorporation of radiolabelled nucleotides during amplification, and 3) use of amplification conditions which minimize heteroduplex formation. High accuracy of the method was confirmed by concordance with values expected from titrated male and female DNAs and cells from patients with sex chromosome aneuploidy. This approach provides a rapid and reproducible method of evaluating relative abundance of allelic genes, and might be applied to detection of autosomal aneuploidy.
Full text
PDF




Images in this article
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Becker-André M., Hahlbrock K. Absolute mRNA quantification using the polymerase chain reaction (PCR). A novel approach by a PCR aided transcript titration assay (PATTY). Nucleic Acids Res. 1989 Nov 25;17(22):9437–9446. doi: 10.1093/nar/17.22.9437. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Beckett T. A., Martin R. H., Hoar D. I. Assessment of the sephadex technique for selection of X-bearing human sperm by analysis of sperm chromosomes, deoxyribonucleic acid and Y-bodies. Fertil Steril. 1989 Nov;52(5):829–835. [PubMed] [Google Scholar]
- Bostock C. J., Gosden J. R., Mitchell A. R. Localisation of a male-specific DNA fragment to a sub-region of the human Y chromosome. Nature. 1978 Mar 23;272(5651):324–328. doi: 10.1038/272324a0. [DOI] [PubMed] [Google Scholar]
- Bradbury M. W., Isola L. M., Gordon J. W. Enzymatic amplification of a Y chromosome repeat in a single blastomere allows identification of the sex of preimplantation mouse embryos. Proc Natl Acad Sci U S A. 1990 Jun;87(11):4053–4057. doi: 10.1073/pnas.87.11.4053. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Fisher E. M., Beer-Romero P., Brown L. G., Ridley A., McNeil J. A., Lawrence J. B., Willard H. F., Bieber F. R., Page D. C. Homologous ribosomal protein genes on the human X and Y chromosomes: escape from X inactivation and possible implications for Turner syndrome. Cell. 1990 Dec 21;63(6):1205–1218. doi: 10.1016/0092-8674(90)90416-c. [DOI] [PubMed] [Google Scholar]
- Gilliland G., Perrin S., Blanchard K., Bunn H. F. Analysis of cytokine mRNA and DNA: detection and quantitation by competitive polymerase chain reaction. Proc Natl Acad Sci U S A. 1990 Apr;87(7):2725–2729. doi: 10.1073/pnas.87.7.2725. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gizang-Ginsberg E., Wolgemuth D. J. Localization of mRNAs in mouse testes by in situ hybridization: distribution of alpha-tubulin and developmental stage specificity of pro-opiomelanocortin transcripts. Dev Biol. 1985 Oct;111(2):293–305. doi: 10.1016/0012-1606(85)90484-1. [DOI] [PubMed] [Google Scholar]
- Guttenbach M., Schmid M. Determination of Y chromosome aneuploidy in human sperm nuclei by nonradioactive in situ hybridization. Am J Hum Genet. 1990 Mar;46(3):553–558. [PMC free article] [PubMed] [Google Scholar]
- Jacobs P. A., Melville M., Ratcliffe S., Keay A. J., Syme J. A cytogenetic survey of 11,680 newborn infants. Ann Hum Genet. 1974 May;37(4):359–376. doi: 10.1111/j.1469-1809.1974.tb01843.x. [DOI] [PubMed] [Google Scholar]
- Joseph A. M., Gosden J. R., Chandley A. C. Estimation of aneuploidy levels in human spermatozoa using chromosome specific probes and in situ hybridisation. Hum Genet. 1984;66(2-3):234–238. doi: 10.1007/BF00286608. [DOI] [PubMed] [Google Scholar]
- Koopman P., Gubbay J., Vivian N., Goodfellow P., Lovell-Badge R. Male development of chromosomally female mice transgenic for Sry. Nature. 1991 May 9;351(6322):117–121. doi: 10.1038/351117a0. [DOI] [PubMed] [Google Scholar]
- Lawler S. D., Fisher R. A. Genetic studies in hydatidiform mole with clinical correlations. Placenta. 1987 Jan-Feb;8(1):77–88. doi: 10.1016/0143-4004(87)90041-5. [DOI] [PubMed] [Google Scholar]
- Martin R. H. Assessment of aneuploidy in human sperm karyotypes. Prog Clin Biol Res. 1989;318:241–252. [PubMed] [Google Scholar]
- Page D. C., Mosher R., Simpson E. M., Fisher E. M., Mardon G., Pollack J., McGillivray B., de la Chapelle A., Brown L. G. The sex-determining region of the human Y chromosome encodes a finger protein. Cell. 1987 Dec 24;51(6):1091–1104. doi: 10.1016/0092-8674(87)90595-2. [DOI] [PubMed] [Google Scholar]
- Pearson P. L., Bobrow M., Vosa C. G. Technique for identifying Y chromosomes in human interphase nuclei. Nature. 1970 Apr 4;226(5240):78–80. doi: 10.1038/226078a0. [DOI] [PubMed] [Google Scholar]
- Pinckert T. L., Lebo R. V., Golbus M. S. Rapid determination of fetal sex by deoxyribonucleic acid amplification of Y chromosome-specific sequences. Am J Obstet Gynecol. 1989 Sep;161(3):693–698. doi: 10.1016/0002-9378(89)90382-7. [DOI] [PubMed] [Google Scholar]
- Plouffe L., Jr, Behzadian A., Tho S. P., McDonough P. G. Deoxyribonucleic acid analysis of the zinc finger Y gene in 45,X/46,XY subjects. Fertil Steril. 1990 Aug;54(2):265–269. doi: 10.1016/s0015-0282(16)53701-7. [DOI] [PubMed] [Google Scholar]
- Sarkar S. Determining proportions of human X and Y sperm with a recombinant deoxyribonucleic acid probe carrying a homologous sequence of sex chromosomes. Fertil Steril. 1989 Jan;51(1):167–169. doi: 10.1016/s0015-0282(16)60448-x. [DOI] [PubMed] [Google Scholar]
- Schneider-Gädicke A., Beer-Romero P., Brown L. G., Nussbaum R., Page D. C. ZFX has a gene structure similar to ZFY, the putative human sex determinant, and escapes X inactivation. Cell. 1989 Jun 30;57(7):1247–1258. doi: 10.1016/0092-8674(89)90061-5. [DOI] [PubMed] [Google Scholar]
- Schreiber G., Dubeau L. C-myc proto-oncogene amplification detected by polymerase chain reaction in archival human ovarian carcinomas. Am J Pathol. 1990 Sep;137(3):653–658. [PMC free article] [PubMed] [Google Scholar]
- Sinclair A. H., Berta P., Palmer M. S., Hawkins J. R., Griffiths B. L., Smith M. J., Foster J. W., Frischauf A. M., Lovell-Badge R., Goodfellow P. N. A gene from the human sex-determining region encodes a protein with homology to a conserved DNA-binding motif. Nature. 1990 Jul 19;346(6281):240–244. doi: 10.1038/346240a0. [DOI] [PubMed] [Google Scholar]
- Tho S. P., Behzadian A., Byrd J. R., McDonough P. G. Correlation of the testicular determinant factor sequence zinc finger Y with varying gonadal phenotypes in a series of 13 subjects with gonadal dysgenesis due to Y aneuploidy. Am J Obstet Gynecol. 1990 Dec;163(6 Pt 1):1968–1975. doi: 10.1016/0002-9378(90)90782-3. [DOI] [PubMed] [Google Scholar]
- Thomsen J. L., Niebuhr E. The frequency of false-positive and false-negative results in the detection of Y-chromosomes in interphase nuclei. Hum Genet. 1986 May;73(1):27–30. doi: 10.1007/BF00292659. [DOI] [PubMed] [Google Scholar]
- Wake N., Seki T., Fujita H., Okubo H., Sakai K., Okuyama K., Hayashi H., Shiina Y., Sato H., Kuroda M. Malignant potential of homozygous and heterozygous complete moles. Cancer Res. 1984 Mar;44(3):1226–1230. [PubMed] [Google Scholar]
- Wevrick R., Willard H. F. Long-range organization of tandem arrays of alpha satellite DNA at the centromeres of human chromosomes: high-frequency array-length polymorphism and meiotic stability. Proc Natl Acad Sci U S A. 1989 Dec;86(23):9394–9398. doi: 10.1073/pnas.86.23.9394. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Yen P. H., Marsh B., Allen E., Tsai S. P., Ellison J., Connolly L., Neiswanger K., Shapiro L. J. The human X-linked steroid sulfatase gene and a Y-encoded pseudogene: evidence for an inversion of the Y chromosome during primate evolution. Cell. 1988 Dec 23;55(6):1123–1135. doi: 10.1016/0092-8674(88)90257-7. [DOI] [PubMed] [Google Scholar]


