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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Feb 10;68(Pt 3):o627. doi: 10.1107/S1600536812004266

(E)-N-[3-(Imidazol-1-yl)-1-phenyl­propyl­idene]hydroxyl­amine

Hoong-Kun Fun a,*,, Ching Kheng Quah a,§, Mohamed I Attia b,, Maha S Almutairi b, Soraya W Ghoneim b
PMCID: PMC3295422  PMID: 22412533

Abstract

The title compound, C12H13N3O, exists in an E configuration with respect to the C=N bond [1.285 (2) Å]. The imidazole ring forms a dihedral angle of 75.97 (10)° with the phenyl ring. In the crystal, mol­ecules are linked via O—H⋯N and C—H⋯N hydrogen bonds into sheets lying parallel to (001). The crystal structure also features C—H⋯π inter­actions.

Related literature  

For general background to and the pharmacological activities of the title compound, see: Weinberg (1996); Wildfeuer et al. (1998); Georgopapadakou (1998). For standard bond-length data, see: Allen et al. (1987). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986).graphic file with name e-68-0o627-scheme1.jpg

Experimental  

Crystal data  

  • C12H13N3O

  • M r = 215.25

  • Monoclinic, Inline graphic

  • a = 8.0990 (1) Å

  • b = 14.0513 (2) Å

  • c = 9.9771 (2) Å

  • β = 93.058 (1)°

  • V = 1133.79 (3) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.08 mm−1

  • T = 100 K

  • 0.35 × 0.18 × 0.11 mm

Data collection  

  • Bruker SMART APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2009) T min = 0.972, T max = 0.991

  • 12642 measured reflections

  • 3300 independent reflections

  • 2653 reflections with I > 2σ(I)

  • R int = 0.026

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.065

  • wR(F 2) = 0.138

  • S = 1.13

  • 3300 reflections

  • 149 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.36 e Å−3

  • Δρmin = −0.29 e Å−3

Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812004266/hb6619sup1.cif

e-68-0o627-sup1.cif (22.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812004266/hb6619Isup2.hkl

e-68-0o627-Isup2.hkl (161.9KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812004266/hb6619Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

Cg1 is the centroid of the C1–C6 phenyl ring.

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H1O1⋯N3i 0.90 (3) 1.82 (3) 2.712 (2) 176 (3)
C2—H2A⋯N1ii 0.95 2.56 3.477 (2) 162
C12—H12ACg1iii 0.95 2.74 3.558 (2) 145

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

The authors would like to thank Universiti Sains Malaysia (USM) for a Research University Grant (grant No. 1001/PFIZIK/811160). This research project was supported by a grant from the research center of the center of female scientific and medical colleges in King Saud University.

supplementary crystallographic information

Comment

A significant increase in fungal infections has been observed over the past three decades. Many reports of invasive topical and systemic infections caused by the opportunistic pathogen Candida species are always associated with the use of broad-spectrum antibiotics, immunosuppressive agents, anticancer and anti-AIDS drugs (Weinberg, 1996). One of the major problems in the treatment of Candida infections is the spread of antifungal drug resistance mainly in patients chronically subjected to antimycotic therapy such as HIV-infected patients (Wildfeuer et al., 1998; Georgopapadakou, 1998). Azoles are commonly used as antifungal agent specially for Candida infections as many marketed drugs contain the azole moiety. The title compound contains the azole moiety and it was prepared to test its antifungal potential and will be further elaborated to other azole-containing new bioactive chemical entities.

In the title compound, Fig.1, the imidazole ring (N2/N3/C10-C12, maximum deviation of 0.001 (2) Å at atoms N3, C11 and C12) forms a dihedral angle of 75.97 (10)° with the phenyl ring (C1-C6). Bond lengths (Allen et al., 1987) and angles are within normal ranges. The title compound exists in trans configuration with respect to the C7═N1 bond [1.285 (2) Å].

In the crystal structure, Fig. 2, molecules are linked via intermolecular O1–H1O1···N3 and C2–H2A···N1 hydrogen bonds (Table 1) into two-dimensional networks parallel to (001). The crystal structure is further consolidated by C12–H12A···Cg1iii (Table 1) interactions, where Cg1 is the centroid of C1-C6 phenyl ring.

Experimental

A mixture of 3-(1H-imidazol-1-yl)-1-phenylpropan-1-one (0.02 g, 0.1 mmol), hydroxylamine hydrochloride (0.14 g, 0.2 mol), and KOH (0.112 g, 0.2 mmol) in ethanol (10 ml) was refluxed under stirring for 18h. The reaction mixture was allowed to cool to room temperature and the insolubles were removed by filtration. The filtrate was evaporated under vacuum and the residue was suspended in water (10 ml), filtered, dried and recrystallized from ethanol to yield colourless blocks of the title compound.

Refinement

Atom H1O1 was located in a difference Fourier map and refined freely with O1-H1O1 = 0.90 (3) Å. The remaining H atoms were positioned geometrically and refined using a riding model with C–H = 0.95 or 0.99 Å and Uiso(H) = 1.2 Ueq(C).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound showing 50% probability displacement ellipsoids for non-H atoms.

Fig. 2.

Fig. 2.

The crystal structure of the title compound, viewed along the b axis. H atoms not involved in hydrogen bonds (dashed lines) have been omitted for clarity.

Crystal data

C12H13N3O F(000) = 456
Mr = 215.25 Dx = 1.261 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 5276 reflections
a = 8.0990 (1) Å θ = 2.5–30.1°
b = 14.0513 (2) Å µ = 0.08 mm1
c = 9.9771 (2) Å T = 100 K
β = 93.058 (1)° Block, colourless
V = 1133.79 (3) Å3 0.35 × 0.18 × 0.11 mm
Z = 4

Data collection

Bruker SMART APEXII CCD diffractometer 3300 independent reflections
Radiation source: fine-focus sealed tube 2653 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.026
φ and ω scans θmax = 30.2°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2009) h = −9→11
Tmin = 0.972, Tmax = 0.991 k = −18→19
12642 measured reflections l = −14→14

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.065 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.138 H atoms treated by a mixture of independent and constrained refinement
S = 1.13 w = 1/[σ2(Fo2) + (0.0228P)2 + 1.5032P] where P = (Fo2 + 2Fc2)/3
3300 reflections (Δ/σ)max = 0.001
149 parameters Δρmax = 0.36 e Å3
0 restraints Δρmin = −0.29 e Å3

Special details

Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.35159 (18) 1.05298 (10) 0.16643 (14) 0.0222 (3)
N1 0.2389 (2) 1.00261 (11) 0.24156 (16) 0.0190 (3)
N2 0.37457 (19) 0.78810 (11) 0.03621 (15) 0.0155 (3)
N3 0.4790 (2) 0.66854 (12) 0.15734 (17) 0.0242 (4)
C1 −0.0041 (2) 0.79271 (13) 0.20420 (18) 0.0185 (4)
H1A 0.0470 0.7650 0.1301 0.022*
C2 −0.1123 (2) 0.73889 (14) 0.27705 (19) 0.0212 (4)
H2A −0.1339 0.6745 0.2529 0.025*
C3 −0.1888 (2) 0.77890 (14) 0.38485 (19) 0.0223 (4)
H3A −0.2612 0.7417 0.4354 0.027*
C4 −0.1592 (2) 0.87348 (14) 0.41854 (19) 0.0215 (4)
H4A −0.2131 0.9014 0.4911 0.026*
C5 −0.0509 (2) 0.92730 (14) 0.34644 (19) 0.0195 (4)
H5A −0.0313 0.9920 0.3700 0.023*
C6 0.0299 (2) 0.88731 (13) 0.23934 (18) 0.0154 (3)
C7 0.1555 (2) 0.94228 (12) 0.16866 (17) 0.0144 (3)
C8 0.1779 (2) 0.92702 (13) 0.02083 (18) 0.0164 (4)
H8A 0.1631 0.9888 −0.0259 0.020*
H8B 0.0896 0.8838 −0.0150 0.020*
C9 0.3457 (2) 0.88532 (13) −0.01285 (18) 0.0177 (4)
H9A 0.3536 0.8858 −0.1115 0.021*
H9B 0.4344 0.9270 0.0261 0.021*
C10 0.4732 (2) 0.76180 (14) 0.14318 (19) 0.0197 (4)
H10A 0.5315 0.8053 0.2013 0.024*
C11 0.3783 (3) 0.63328 (14) 0.0532 (2) 0.0256 (4)
H11A 0.3577 0.5677 0.0365 0.031*
C12 0.3129 (3) 0.70599 (14) −0.0221 (2) 0.0233 (4)
H12A 0.2396 0.7011 −0.0994 0.028*
H1O1 0.403 (3) 1.0915 (19) 0.227 (3) 0.037 (7)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0233 (7) 0.0180 (7) 0.0258 (7) −0.0076 (6) 0.0066 (6) −0.0048 (6)
N1 0.0181 (8) 0.0159 (7) 0.0232 (8) −0.0006 (6) 0.0033 (6) −0.0019 (6)
N2 0.0154 (7) 0.0140 (7) 0.0169 (7) 0.0004 (6) 0.0004 (6) −0.0012 (6)
N3 0.0239 (9) 0.0225 (9) 0.0261 (9) 0.0041 (7) 0.0016 (7) 0.0042 (7)
C1 0.0178 (9) 0.0193 (9) 0.0181 (8) −0.0008 (7) −0.0018 (7) −0.0015 (7)
C2 0.0223 (9) 0.0185 (9) 0.0221 (9) −0.0049 (7) −0.0049 (7) 0.0010 (7)
C3 0.0201 (9) 0.0263 (10) 0.0204 (9) −0.0036 (8) 0.0003 (7) 0.0064 (8)
C4 0.0199 (9) 0.0263 (10) 0.0185 (9) 0.0017 (8) 0.0023 (7) 0.0015 (7)
C5 0.0195 (9) 0.0184 (9) 0.0205 (9) 0.0012 (7) −0.0001 (7) −0.0014 (7)
C6 0.0143 (8) 0.0163 (8) 0.0149 (8) 0.0010 (7) −0.0041 (6) 0.0017 (6)
C7 0.0145 (8) 0.0121 (8) 0.0163 (8) 0.0038 (6) −0.0013 (6) 0.0021 (6)
C8 0.0176 (9) 0.0160 (8) 0.0152 (8) 0.0024 (7) −0.0021 (7) 0.0029 (6)
C9 0.0205 (9) 0.0148 (8) 0.0179 (8) 0.0014 (7) 0.0030 (7) 0.0021 (7)
C10 0.0207 (9) 0.0190 (9) 0.0191 (9) 0.0026 (7) −0.0017 (7) −0.0009 (7)
C11 0.0258 (10) 0.0177 (9) 0.0338 (11) −0.0002 (8) 0.0057 (9) −0.0026 (8)
C12 0.0252 (10) 0.0197 (9) 0.0244 (9) −0.0019 (8) −0.0044 (8) −0.0043 (8)

Geometric parameters (Å, º)

O1—N1 1.403 (2) C4—C5 1.388 (3)
O1—H1O1 0.90 (3) C4—H4A 0.9500
N1—C7 1.285 (2) C5—C6 1.400 (3)
N2—C10 1.350 (2) C5—H5A 0.9500
N2—C12 1.374 (2) C6—C7 1.485 (3)
N2—C9 1.466 (2) C7—C8 1.511 (2)
N3—C10 1.319 (3) C8—C9 1.534 (3)
N3—C11 1.378 (3) C8—H8A 0.9900
C1—C2 1.391 (3) C8—H8B 0.9900
C1—C6 1.398 (3) C9—H9A 0.9900
C1—H1A 0.9500 C9—H9B 0.9900
C2—C3 1.389 (3) C10—H10A 0.9500
C2—H2A 0.9500 C11—C12 1.359 (3)
C3—C4 1.389 (3) C11—H11A 0.9500
C3—H3A 0.9500 C12—H12A 0.9500
N1—O1—H1O1 103.3 (17) N1—C7—C6 115.28 (16)
C7—N1—O1 111.57 (15) N1—C7—C8 124.02 (17)
C10—N2—C12 106.95 (16) C6—C7—C8 120.70 (15)
C10—N2—C9 126.60 (15) C7—C8—C9 114.95 (15)
C12—N2—C9 126.38 (16) C7—C8—H8A 108.5
C10—N3—C11 105.09 (17) C9—C8—H8A 108.5
C2—C1—C6 120.45 (18) C7—C8—H8B 108.5
C2—C1—H1A 119.8 C9—C8—H8B 108.5
C6—C1—H1A 119.8 H8A—C8—H8B 107.5
C3—C2—C1 120.27 (18) N2—C9—C8 114.23 (15)
C3—C2—H2A 119.9 N2—C9—H9A 108.7
C1—C2—H2A 119.9 C8—C9—H9A 108.7
C4—C3—C2 119.75 (18) N2—C9—H9B 108.7
C4—C3—H3A 120.1 C8—C9—H9B 108.7
C2—C3—H3A 120.1 H9A—C9—H9B 107.6
C5—C4—C3 120.14 (18) N3—C10—N2 111.89 (17)
C5—C4—H4A 119.9 N3—C10—H10A 124.1
C3—C4—H4A 119.9 N2—C10—H10A 124.1
C4—C5—C6 120.72 (18) C12—C11—N3 110.14 (18)
C4—C5—H5A 119.6 C12—C11—H11A 124.9
C6—C5—H5A 119.6 N3—C11—H11A 124.9
C1—C6—C5 118.63 (17) C11—C12—N2 105.94 (17)
C1—C6—C7 120.40 (16) C11—C12—H12A 127.0
C5—C6—C7 120.90 (16) N2—C12—H12A 127.0
C6—C1—C2—C3 0.5 (3) C5—C6—C7—C8 −147.91 (17)
C1—C2—C3—C4 1.1 (3) N1—C7—C8—C9 66.1 (2)
C2—C3—C4—C5 −1.3 (3) C6—C7—C8—C9 −114.85 (18)
C3—C4—C5—C6 −0.1 (3) C10—N2—C9—C8 −104.3 (2)
C2—C1—C6—C5 −1.9 (3) C12—N2—C9—C8 79.3 (2)
C2—C1—C6—C7 175.03 (17) C7—C8—C9—N2 65.6 (2)
C4—C5—C6—C1 1.7 (3) C11—N3—C10—N2 0.1 (2)
C4—C5—C6—C7 −175.24 (17) C12—N2—C10—N3 0.0 (2)
O1—N1—C7—C6 −178.52 (14) C9—N2—C10—N3 −176.95 (17)
O1—N1—C7—C8 0.6 (2) C10—N3—C11—C12 −0.1 (2)
C1—C6—C7—N1 −145.59 (17) N3—C11—C12—N2 0.1 (2)
C5—C6—C7—N1 31.3 (2) C10—N2—C12—C11 −0.1 (2)
C1—C6—C7—C8 35.2 (2) C9—N2—C12—C11 176.87 (18)

Hydrogen-bond geometry (Å, º)

Cg1 is the centroid of the C1–C6 phenyl ring.

D—H···A D—H H···A D···A D—H···A
O1—H1O1···N3i 0.90 (3) 1.82 (3) 2.712 (2) 176 (3)
C2—H2A···N1ii 0.95 2.56 3.477 (2) 162
C12—H12A···Cg1iii 0.95 2.74 3.558 (2) 145

Symmetry codes: (i) −x+1, y+1/2, −z+1/2; (ii) −x, y−1/2, −z+1/2; (iii) x, −y+1/2, z−3/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB6619).

References

  1. Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.
  2. Bruker (2009). APEX2, SAINT and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Cosier, J. & Glazer, A. M. (1986). J. Appl. Cryst. 19, 105–107.
  4. Georgopapadakou, N. H. (1998). Curr. Opin. Microbiol. 1, 547–557. [DOI] [PubMed]
  5. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  6. Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]
  7. Weinberg, E. D. (1996). Burger’s Medicinal Chemistry and Drug Discovery, 5th ed., Vol. 2, pp. 637–652. New York: Wiley-Interscience.
  8. Wildfeuer, A., Seidl, H. P., Paule, I. & Haberreiter, A. (1998). Mycoses, 41, 306–319. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812004266/hb6619sup1.cif

e-68-0o627-sup1.cif (22.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812004266/hb6619Isup2.hkl

e-68-0o627-Isup2.hkl (161.9KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812004266/hb6619Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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