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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Feb 10;68(Pt 3):o660. doi: 10.1107/S1600536812004710

rac-4-Carbamoylpiperidinium cis-2-car­boxy­cyclo­hexane-1-carboxyl­ate

Graham Smith a,*, Urs D Wermuth a
PMCID: PMC3295451  PMID: 22412562

Abstract

In the title racemic salt, C6H13N2O+·C8H11O4 , formed from the reaction of cis-cyclo­hexane-1,2-dicarb­oxy­lic anhydride with isonipecotamide, the cations are linked into duplex chain substructures through both centrosymmetric cyclic head-to-head ‘amide motif’ hydrogen-bonding associations [graph set R 2 2(8)] and ‘side-by-side’ R 2 2(14) associations. The anions are incorporated into the chains through cyclic R 4 3(10) inter­actions involving amide and piperidinium N—H⋯Ocarbox­yl hydrogen bonds which, together with inter-anion carb­oxy­lic acid O—H⋯Ocarbox­yl hydrogen bonds, give a two-dimensional layered structure extending along (011).

Related literature  

For examples of structures of 1:1 Lewis base salts of cis-cyclo­hexane-1,2-dicarb­oxy­lic acid, see: Smith & Wermuth (2011a ,b ). For examples of isonipecotamide proton-transfer salts, see: Smith & Wermuth (2010). For graph-set analysis, see: Etter et al. (1990). For hydrogen-bonding motifs, see: Allen et al. (1998).graphic file with name e-68-0o660-scheme1.jpg

Experimental  

Crystal data  

  • C6H13N2O+·C8H11O4

  • M r = 300.35

  • Monoclinic, Inline graphic

  • a = 19.0097 (14) Å

  • b = 9.0667 (7) Å

  • c = 9.1999 (8) Å

  • β = 92.022 (7)°

  • V = 1584.7 (2) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.10 mm−1

  • T = 200 K

  • 0.40 × 0.35 × 0.10 mm

Data collection  

  • Oxford Gemini-S CCD area-detector diffractometer

  • Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010) T min = 0.86, T max = 0.98

  • 10518 measured reflections

  • 3100 independent reflections

  • 2146 reflections with I > 2σ(I)

  • R int = 0.057

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.075

  • wR(F 2) = 0.182

  • S = 1.06

  • 3100 reflections

  • 210 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.43 e Å−3

  • Δρmin = −0.20 e Å−3

Data collection: CrysAlis PRO (Oxford Diffraction, 2010); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR92 (Altomare et al., 1994); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008) within WinGX (Farrugia, 1999); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: PLATON.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812004710/nk2139sup1.cif

e-68-0o660-sup1.cif (20KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812004710/nk2139Isup2.hkl

e-68-0o660-Isup2.hkl (149KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812004710/nk2139Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N1A—H11A⋯O41Ai 0.97 (3) 1.95 (3) 2.861 (3) 155 (2)
N1A—H12A⋯O11 0.99 (4) 1.64 (4) 2.588 (4) 158 (3)
N41A—H41A⋯O41Aii 0.86 (3) 2.14 (4) 2.996 (3) 174 (2)
N41A—H42A⋯O12iii 0.77 (3) 2.11 (3) 2.882 (4) 177 (3)
O22—H22⋯O12iv 0.93 (5) 1.64 (5) 2.571 (3) 173 (4)

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic.

Acknowledgments

The authors acknowledge financial support from the Australian Research Council, and the Science and Engineering Faculty and the University Library, Queensland University of Technology.

supplementary crystallographic information

Comment

cis-Cyclohexane-1,2-dicarboxylic anhydride (cis-CHDC anhydride) forms racemic 1:1 salts with some Lewis bases and the structures of a few of these have been reported, e.g. with 2-aminopyridine (Smith & Wermuth, 2011a) and 4-aminopyridine (Smith & Wermuth, 2011b). The 1:1 stoichiometric reaction of cis-CHDC anhydride with piperidine-4-carboxamide (isonipecotamide) also gave a racemic salt, the title compound, C6H12N2O+.C8H11O4- and the structure is reported here.

In this compound (Fig. 1) the cis-configuration of the anion is found as expected, with the cations linked into duplex ribbon substructures through both centrosymmetric cyclic head-to-head hydrogen-bonding associations [the `amide' motif (Allen et al., 1998)] [graph set R22(8) (Etter et al., 1990)] and `side-by-side' R22(14) associations (Table 1, Fig. 2). Both of these associations have been found in the structures of Lewis base salts of isonipecotamide (Smith & Wermuth, 2010). In the present structure, the monoanions are incorporated into the ribbons through cyclic R34(10) amide and piperidinium N—H···Ocarboxyl associations and together with inter-anion carboxylic acid O—H···Ocarboxyl hydrogen bonds down c (Fig. 3), give a two-dimensional layered structure extending along (011).

Experimental

The title compound was synthesized by heating together under reflux for 15 min, 1 mmol quantities of cyclohexane-1,2-dicarboxylic anhydride and piperidine-4-carboxamide (isonipecotamide) in 50 ml of methanol. After volume reduction to 30 ml, the hot-filtered solution was allowed evaporate to dryness at room temperature, giving a white amorphous powder. Minor colourless crystal plates were obtained in the residual viscous residue after evaporation of a solution of the compound in 80% propane-2-ol–water.

Refinement

H atoms potentially involved in hydrogen-bonding associations were located in a difference Fourier analysis and their positional and isotropic displacement parameters were refined. Other H atoms were included in the refinement at calculated positions [C—H = 0.97–0.98 Å] with Uiso(H) = 1.2Ueq(C), using a riding-model approximation.

Figures

Fig. 1.

Fig. 1.

Molecular conformation of the cation and anion in the title compound, with the inter-ion hydrogen bond shown as a dashed line. Displacement ellipsoids are drawn at the 40% probability level.

Fig. 2.

Fig. 2.

The hydrogen-bonded ribbon substructure in the title salt showing the isonipicotamide cation R22(8) and R22(14) cyclic associations and the R34(10) incorporation of the monoanion. For symmetry codes, see Table 1.

Fig. 3.

Fig. 3.

A view of the two-dimensional hydrogen-bonded layered structure looking down the b axial direction, showing the inter-ribbon carboxylic acid···carboxyl hydrogen-bonding extensions down c.

Crystal data

C6H13N2O+·C8H11O4 F(000) = 644
Mr = 300.35 Dx = 1.255 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 3793 reflections
a = 19.0097 (14) Å θ = 3.2–28.9°
b = 9.0667 (7) Å µ = 0.10 mm1
c = 9.1999 (8) Å T = 200 K
β = 92.022 (7)° Plate, colourless
V = 1584.7 (2) Å3 0.40 × 0.35 × 0.10 mm
Z = 4

Data collection

Oxford Gemini-S CCD area-detector diffractometer 3100 independent reflections
Radiation source: Enhance (Mo) X-ray source 2146 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.057
Detector resolution: 16.077 pixels mm-1 θmax = 26.0°, θmin = 3.2°
ω scans h = −23→22
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010) k = −11→11
Tmin = 0.86, Tmax = 0.98 l = −11→11
10518 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.075 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.182 H atoms treated by a mixture of independent and constrained refinement
S = 1.06 w = 1/[σ2(Fo2) + (0.0845P)2 + 0.9949P] where P = (Fo2 + 2Fc2)/3
3100 reflections (Δ/σ)max = 0.002
210 parameters Δρmax = 0.43 e Å3
0 restraints Δρmin = −0.20 e Å3

Special details

Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O11 0.21833 (13) 0.8455 (3) 0.0243 (3) 0.0522 (9)
O12 0.23582 (11) 1.0432 (3) −0.1098 (2) 0.0415 (8)
O21 0.25201 (12) 1.1290 (3) 0.2369 (3) 0.0487 (9)
O22 0.31747 (13) 1.3299 (3) 0.2117 (3) 0.0485 (9)
C1 0.33119 (16) 0.9592 (3) 0.0442 (4) 0.0362 (10)
C2 0.35236 (15) 1.1183 (4) 0.0836 (4) 0.0337 (10)
C3 0.42799 (19) 1.1251 (5) 0.1462 (5) 0.0634 (16)
C4 0.4392 (2) 1.0232 (6) 0.2741 (6) 0.086 (2)
C5 0.4211 (2) 0.8668 (6) 0.2325 (6) 0.085 (2)
C6 0.3456 (2) 0.8519 (4) 0.1711 (5) 0.0586 (14)
C11 0.25621 (15) 0.9481 (3) −0.0177 (3) 0.0306 (9)
C21 0.30223 (16) 1.1903 (4) 0.1864 (3) 0.0337 (10)
O41A −0.00706 (10) 0.2052 (2) −0.0339 (2) 0.0298 (7)
N1A 0.13089 (14) 0.6330 (3) −0.0339 (3) 0.0293 (8)
N41A 0.08655 (16) 0.0589 (3) −0.0669 (3) 0.0286 (8)
C2A 0.11125 (16) 0.5811 (3) −0.1821 (3) 0.0290 (9)
C3A 0.06735 (15) 0.4418 (3) −0.1727 (3) 0.0257 (9)
C4A 0.10386 (14) 0.3218 (3) −0.0845 (3) 0.0251 (8)
C5A 0.12773 (16) 0.3800 (3) 0.0645 (3) 0.0292 (9)
C6A 0.17115 (17) 0.5201 (3) 0.0524 (3) 0.0325 (10)
C41A 0.05649 (14) 0.1901 (3) −0.0612 (3) 0.0236 (8)
H1 0.36180 0.92850 −0.03370 0.0430*
H2 0.35070 1.17570 −0.00670 0.0400*
H22 0.288 (3) 1.369 (5) 0.281 (5) 0.082 (15)*
H31 0.46020 1.09850 0.07100 0.0760*
H32 0.43860 1.22540 0.17640 0.0760*
H41 0.41000 1.05460 0.35270 0.1030*
H42 0.48800 1.02810 0.30850 0.1030*
H51 0.42710 0.80410 0.31750 0.1020*
H52 0.45340 0.83290 0.16040 0.1020*
H61 0.31300 0.87170 0.24740 0.0700*
H62 0.33780 0.75160 0.13760 0.0700*
H4A 0.14530 0.28900 −0.13600 0.0300*
H11A 0.0869 (17) 0.663 (3) 0.007 (3) 0.027 (8)*
H12A 0.161 (2) 0.722 (4) −0.035 (4) 0.061 (11)*
H21A 0.15340 0.56100 −0.23520 0.0350*
H22A 0.08450 0.65690 −0.23390 0.0350*
H31A 0.02300 0.46550 −0.12910 0.0310*
H32A 0.05690 0.40530 −0.27020 0.0310*
H41A 0.0623 (18) −0.017 (4) −0.045 (3) 0.037 (10)*
H42A 0.1263 (17) 0.054 (3) −0.082 (3) 0.017 (8)*
H51A 0.08680 0.40010 0.12130 0.0350*
H52A 0.15560 0.30510 0.11510 0.0350*
H61A 0.18260 0.55830 0.14880 0.0390*
H62A 0.21480 0.49810 0.00550 0.0390*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O11 0.0398 (14) 0.0352 (14) 0.0811 (19) −0.0182 (11) −0.0039 (13) 0.0027 (13)
O12 0.0305 (12) 0.0545 (16) 0.0393 (13) −0.0007 (11) −0.0015 (10) 0.0068 (11)
O21 0.0385 (14) 0.0496 (15) 0.0590 (16) −0.0112 (11) 0.0170 (12) −0.0067 (12)
O22 0.0473 (15) 0.0479 (16) 0.0512 (15) −0.0127 (12) 0.0156 (12) −0.0159 (12)
C1 0.0240 (16) 0.0363 (19) 0.0483 (19) 0.0031 (14) 0.0016 (14) −0.0011 (15)
C2 0.0211 (15) 0.0402 (19) 0.0398 (18) −0.0042 (13) 0.0006 (13) −0.0027 (14)
C3 0.028 (2) 0.074 (3) 0.088 (3) −0.0069 (19) −0.001 (2) −0.025 (2)
C4 0.043 (3) 0.111 (5) 0.102 (4) 0.009 (3) −0.035 (3) −0.007 (3)
C5 0.053 (3) 0.097 (4) 0.103 (4) 0.028 (3) −0.022 (3) 0.026 (3)
C6 0.046 (2) 0.047 (2) 0.082 (3) 0.0090 (18) −0.008 (2) 0.020 (2)
C11 0.0273 (16) 0.0242 (16) 0.0403 (17) −0.0002 (13) −0.0005 (13) −0.0073 (14)
C21 0.0277 (17) 0.0436 (19) 0.0294 (16) −0.0014 (15) −0.0036 (13) −0.0003 (14)
O41A 0.0228 (11) 0.0265 (11) 0.0401 (12) −0.0011 (9) 0.0010 (9) 0.0013 (9)
N1A 0.0274 (15) 0.0253 (14) 0.0351 (14) 0.0002 (12) −0.0004 (11) −0.0009 (11)
N41A 0.0188 (14) 0.0291 (15) 0.0381 (15) −0.0049 (12) 0.0026 (11) 0.0020 (11)
C2A 0.0288 (16) 0.0317 (16) 0.0264 (15) 0.0014 (13) −0.0010 (12) 0.0075 (13)
C3A 0.0257 (15) 0.0310 (16) 0.0200 (14) −0.0011 (13) −0.0046 (11) 0.0013 (12)
C4A 0.0217 (14) 0.0258 (15) 0.0278 (15) 0.0000 (12) −0.0006 (12) 0.0001 (12)
C5A 0.0326 (17) 0.0284 (16) 0.0259 (15) 0.0002 (13) −0.0092 (12) 0.0037 (12)
C6A 0.0378 (18) 0.0270 (16) 0.0318 (16) −0.0027 (14) −0.0123 (13) 0.0051 (13)
C41A 0.0240 (15) 0.0253 (15) 0.0211 (14) −0.0014 (12) −0.0063 (11) 0.0014 (12)

Geometric parameters (Å, º)

O11—C11 1.246 (4) C3—H31 0.9700
O12—C11 1.260 (4) C3—H32 0.9700
O21—C21 1.211 (4) C4—H42 0.9700
O22—C21 1.317 (4) C4—H41 0.9700
O22—H22 0.93 (5) C5—H52 0.9700
O41A—C41A 1.250 (3) C5—H51 0.9700
N1A—C6A 1.490 (4) C6—H62 0.9700
N1A—C2A 1.478 (4) C6—H61 0.9700
N41A—C41A 1.322 (4) C2A—C3A 1.518 (4)
N1A—H12A 0.99 (4) C3A—C4A 1.511 (4)
N1A—H11A 0.97 (3) C4A—C41A 1.515 (4)
N41A—H41A 0.86 (3) C4A—C5A 1.523 (4)
N41A—H42A 0.77 (3) C5A—C6A 1.521 (4)
C1—C2 1.538 (5) C2A—H21A 0.9700
C1—C6 1.537 (5) C2A—H22A 0.9700
C1—C11 1.520 (4) C3A—H31A 0.9700
C2—C3 1.531 (5) C3A—H32A 0.9700
C2—C21 1.514 (5) C4A—H4A 0.9800
C3—C4 1.505 (7) C5A—H51A 0.9700
C4—C5 1.506 (8) C5A—H52A 0.9700
C5—C6 1.530 (6) C6A—H61A 0.9700
C1—H1 0.9800 C6A—H62A 0.9700
C2—H2 0.9800
C21—O22—H22 111 (3) C4—C5—H51 109.00
C2A—N1A—C6A 112.4 (2) C4—C5—H52 109.00
C6A—N1A—H11A 114.9 (16) H51—C5—H52 108.00
H11A—N1A—H12A 106 (3) C6—C5—H52 109.00
C6A—N1A—H12A 106 (2) C1—C6—H62 109.00
C2A—N1A—H12A 112 (2) C1—C6—H61 109.00
C2A—N1A—H11A 104.7 (17) C5—C6—H62 109.00
H41A—N41A—H42A 122 (3) H61—C6—H62 108.00
C41A—N41A—H42A 119 (2) C5—C6—H61 109.00
C41A—N41A—H41A 119 (2) N1A—C2A—C3A 109.5 (2)
C6—C1—C11 112.5 (3) C2A—C3A—C4A 112.7 (2)
C2—C1—C6 112.1 (3) C3A—C4A—C41A 112.3 (2)
C2—C1—C11 112.6 (2) C5A—C4A—C41A 107.8 (2)
C1—C2—C21 112.7 (3) C3A—C4A—C5A 110.5 (2)
C3—C2—C21 110.6 (3) C4A—C5A—C6A 111.6 (2)
C1—C2—C3 111.2 (3) N1A—C6A—C5A 110.1 (2)
C2—C3—C4 112.0 (3) O41A—C41A—C4A 121.7 (2)
C3—C4—C5 110.8 (4) N41A—C41A—C4A 116.3 (2)
C4—C5—C6 112.3 (4) O41A—C41A—N41A 121.9 (3)
C1—C6—C5 111.4 (3) N1A—C2A—H21A 110.00
O11—C11—O12 123.5 (3) N1A—C2A—H22A 110.00
O11—C11—C1 118.6 (3) C3A—C2A—H21A 110.00
O12—C11—C1 118.0 (3) C3A—C2A—H22A 110.00
O21—C21—C2 124.3 (3) H21A—C2A—H22A 108.00
O22—C21—C2 112.7 (3) C2A—C3A—H31A 109.00
O21—C21—O22 123.0 (3) C2A—C3A—H32A 109.00
C6—C1—H1 106.00 C4A—C3A—H31A 109.00
C2—C1—H1 106.00 C4A—C3A—H32A 109.00
C11—C1—H1 106.00 H31A—C3A—H32A 108.00
C3—C2—H2 107.00 C3A—C4A—H4A 109.00
C1—C2—H2 107.00 C5A—C4A—H4A 109.00
C21—C2—H2 107.00 C41A—C4A—H4A 109.00
C4—C3—H31 109.00 C4A—C5A—H51A 109.00
C2—C3—H31 109.00 C4A—C5A—H52A 109.00
H31—C3—H32 108.00 C6A—C5A—H51A 109.00
C4—C3—H32 109.00 C6A—C5A—H52A 109.00
C2—C3—H32 109.00 H51A—C5A—H52A 108.00
C5—C4—H42 109.00 N1A—C6A—H61A 110.00
C3—C4—H42 110.00 N1A—C6A—H62A 110.00
H41—C4—H42 108.00 C5A—C6A—H61A 110.00
C5—C4—H41 110.00 C5A—C6A—H62A 110.00
C3—C4—H41 109.00 H61A—C6A—H62A 108.00
C6—C5—H51 109.00
C2A—N1A—C6A—C5A −58.9 (3) C3—C2—C21—O22 59.5 (4)
C6A—N1A—C2A—C3A 58.5 (3) C1—C2—C21—O21 2.3 (5)
C11—C1—C2—C3 179.7 (3) C2—C3—C4—C5 57.2 (5)
C11—C1—C2—C21 55.0 (4) C3—C4—C5—C6 −56.7 (5)
C6—C1—C2—C21 −73.1 (3) C4—C5—C6—C1 53.8 (5)
C11—C1—C6—C5 −179.3 (3) N1A—C2A—C3A—C4A −55.6 (3)
C2—C1—C11—O11 −137.0 (3) C2A—C3A—C4A—C5A 53.0 (3)
C2—C1—C11—O12 43.4 (4) C2A—C3A—C4A—C41A 173.4 (2)
C6—C1—C11—O11 −9.1 (4) C41A—C4A—C5A—C6A −175.6 (2)
C6—C1—C11—O12 171.3 (3) C3A—C4A—C41A—O41A −40.5 (4)
C2—C1—C6—C5 −51.1 (4) C3A—C4A—C41A—N41A 141.6 (3)
C6—C1—C2—C3 51.7 (4) C5A—C4A—C41A—O41A 81.5 (3)
C1—C2—C3—C4 −54.8 (5) C5A—C4A—C41A—N41A −96.5 (3)
C21—C2—C3—C4 71.2 (4) C3A—C4A—C5A—C6A −52.5 (3)
C1—C2—C21—O22 −175.4 (3) C4A—C5A—C6A—N1A 55.2 (3)
C3—C2—C21—O21 −122.8 (4)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N1A—H11A···O41Ai 0.97 (3) 1.95 (3) 2.861 (3) 155 (2)
N1A—H12A···O11 0.99 (4) 1.64 (4) 2.588 (4) 158 (3)
N41A—H41A···O41Aii 0.86 (3) 2.14 (4) 2.996 (3) 174 (2)
N41A—H42A···O12iii 0.77 (3) 2.11 (3) 2.882 (4) 177 (3)
O22—H22···O12iv 0.93 (5) 1.64 (5) 2.571 (3) 173 (4)
C4A—H4A···O21v 0.98 2.49 3.340 (4) 145
C2A—H21A···O21v 0.97 2.57 3.389 (4) 143
C2A—H22A···O41Avi 0.97 2.59 3.413 (3) 143
C3—H32···O22 0.97 2.52 2.884 (5) 102
C6A—H61A···O12vii 0.97 2.58 3.351 (3) 137

Symmetry codes: (i) −x, −y+1, −z; (ii) −x, −y, −z; (iii) x, y−1, z; (iv) x, −y+5/2, z+1/2; (v) x, −y+3/2, z−1/2; (vi) −x, y+1/2, −z−1/2; (vii) x, −y+3/2, z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: NK2139).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812004710/nk2139sup1.cif

e-68-0o660-sup1.cif (20KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812004710/nk2139Isup2.hkl

e-68-0o660-Isup2.hkl (149KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812004710/nk2139Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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