Abstract
In the title Schiff base compound, C13H9Cl2NO, the dihedral angle between the mean planes of the benzene rings is 10.20 (10)°. The crystal structure is stabilized by O—H⋯N hydrogen bonds and weak π–π stacking interactions [centroid–centroid distance = 3.757 (1) Å].
Related literature
For Schiff bases related to coordination chemistry, see: Calligaris et al. (1972 ▶); Cozzi (2004 ▶); Curini et al. (2002 ▶). For the antibacterial, anticancer, antiinflammatory and antitoxic properties, see: Williams (1972 ▶); Karia & Parsania (1999 ▶); Desai et al. (2001 ▶). For the industrial and biological properties of Schiff bases, see: Lozier et al. (1975 ▶); Aydogan et al. (2001 ▶). For structural studies of Schiff bases, see: Gül et al. (2007 ▶); Şahin et al. (2005 ▶); Şahin, Ağar et al. (2009 ▶); Şahin, Erşahin et al. (2009 ▶); Şahin, Işık et al. (2009 ▶). For the classification of hydrogen-bonding patterns, see: Bernstein et al. (1995 ▶).
Experimental
Crystal data
C13H9Cl2NO
M r = 266.11
Orthorhombic,
a = 9.7438 (6) Å
b = 9.9953 (5) Å
c = 12.1342 (6) Å
V = 1181.78 (11) Å3
Z = 4
Mo Kα radiation
μ = 0.53 mm−1
T = 296 K
0.42 × 0.34 × 0.24 mm
Data collection
Stoe IPDS II diffractometer
Absorption correction: integration (X-RED32; Stoe & Cie, 2002 ▶) T min = 0.807, T max = 0.901
11473 measured reflections
2325 independent reflections
1960 reflections with I > 2σ(I)
R int = 0.049
Refinement
R[F 2 > 2σ(F 2)] = 0.031
wR(F 2) = 0.064
S = 0.96
2325 reflections
154 parameters
H-atom parameters constrained
Δρmax = 0.12 e Å−3
Δρmin = −0.17 e Å−3
Absolute structure: Flack (1983 ▶), 968 Friedel pairs
Flack parameter: 0.02 (6)
Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶).
Supplementary Material
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812005193/jj2120sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812005193/jj2120Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812005193/jj2120Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| O1—H1⋯N1i | 0.82 | 1.96 | 2.778 (2) | 176 |
Symmetry code: (i)
.
Acknowledgments
The authors acknowledge the Faculty of Arts and Sciences of Ondokuz Mayıs University, Turkey, for the use of the Stoe IPDSII diffractometer (purchased under grant No. F279 of the University Research Grant of Ondokuz Mayıs University).
supplementary crystallographic information
Comment
Schiff bases are important in diverse fields of chemistry and biochemistry owing to their biological activites (Calligaris et al., 1972; Lozier et al., 1975). Most Schiff bases have antibacterial, anticancer, antinflammatory and antioxic properties (Williams, 1972). The present work is part of our structral study of Schiff bases (Gül et al., 2007; Şahin, Ağar et al., 2009; Şahin, Işık et al., 2009; Şahin, Erşahin et al., 2009) and we report here the structure of the title compound, C13H9Cl2NO, (I).
The dihedral angle between the mean planes of the two aromatic rings is 10.20° and the C12—C13—N1—C3 torsion angle is 175.96 (17)° (Fig. 1). All bond lenghs are within normal values. The N1—C13 double bond length (1.268 (2)Å) is similar to the corresponding bond lengths in E-2-Methoxy-6-[(2-trifluoromethylphenylimino) methyl]phenol (1.270 (5) Å) (Şahin et al., 2005) and E-4-Methyl-2-[3-(trifluoromethyl)-phenyliminomethyl]phenol (1.270 (3) Å] (Gül et al., 2007).
In the crystal, the molecules are linked into sheets by O—H···N hydrogen bonds (Table 1) generating C(8) chains (Bernstein et al.,1995) along (011)(Fig. 2). Weak, symmetry independent π–π stacking interactions are observed which may influence crystal stability . The perpendicular distance from Cg1 to Cg1ii [symmetry code: (ii) = -x, 1 - y, z] is 3.62 (0)Å. The centroid-to-centroid distance is 3.757 (1)Å.
Experimental
The title compound, (I), was prepared by refluxing a solution mixture containing 3-chloro-4-hydroxybenzaldehyde (0.008 g 0.051 mmol) in 20 ml ethanol and 4-chloroaniline (0.007 g 0.051 mmol) in 20 ml ethanol for 1 h. Crystals of (I) suitable for X-ray analysis were obtained from ethyl alcohol by slow evaporation (yield %54; m.p 441–442 K).
Refinement
All H atoms were placed in calculated positions and constrained to ride on their parents atoms, with CH = 0.93Å and OH (hydroxyl) = 0.82Å with Uiso(H)=1.2Ueq(C, O).
Figures
Fig. 1.
The molecular structure of the title compound, showing the atom-numbering scheme. Displacement ellipsoids are drawn at the 30% probability.
Fig. 2.
Molecular packing of the title compound, viewed along the b axis. O—H···N hydrogen bonds are shown as dashed lines. H atoms not involved in these interactions have been omitted for clarity.
Crystal data
| C13H9Cl2NO | F(000) = 544 |
| Mr = 266.11 | Dx = 1.496 Mg m−3 |
| Orthorhombic, P21212 | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: P 2 2ab | Cell parameters from 20026 reflections |
| a = 9.7438 (6) Å | θ = 1.7–27.3° |
| b = 9.9953 (5) Å | µ = 0.53 mm−1 |
| c = 12.1342 (6) Å | T = 296 K |
| V = 1181.78 (11) Å3 | Prism, yellow |
| Z = 4 | 0.42 × 0.34 × 0.24 mm |
Data collection
| Stoe IPDS II diffractometer | 2325 independent reflections |
| Radiation source: fine-focus sealed tube | 1960 reflections with I > 2σ(I) |
| Graphite monochromator | Rint = 0.049 |
| Detector resolution: 6.67 pixels mm-1 | θmax = 26.0°, θmin = 1.7° |
| ω scans | h = −11→12 |
| Absorption correction: integration (X-RED32; Stoe & Cie, 2002) | k = −12→12 |
| Tmin = 0.807, Tmax = 0.901 | l = −14→14 |
| 11473 measured reflections |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.031 | H-atom parameters constrained |
| wR(F2) = 0.064 | w = 1/[σ2(Fo2) + (0.0363P)2] where P = (Fo2 + 2Fc2)/3 |
| S = 0.96 | (Δ/σ)max = 0.003 |
| 2325 reflections | Δρmax = 0.12 e Å−3 |
| 154 parameters | Δρmin = −0.17 e Å−3 |
| 0 restraints | Absolute structure: Flack (1983), 968 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.02 (6) |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Cl1 | −0.02767 (6) | 0.22741 (7) | 0.73432 (4) | 0.06816 (19) | |
| Cl2 | 0.78712 (7) | 1.02829 (7) | 0.54617 (5) | 0.0792 (2) | |
| O1 | 0.01370 (14) | 0.20491 (15) | 0.96945 (11) | 0.0596 (4) | |
| H1 | 0.0307 | 0.1983 | 1.0354 | 0.089* | |
| N1 | 0.42961 (15) | 0.66841 (17) | 0.80818 (13) | 0.0474 (4) | |
| C12 | 0.25372 (18) | 0.4980 (2) | 0.82414 (15) | 0.0491 (5) | |
| C9 | 0.09145 (18) | 0.3021 (2) | 0.92525 (15) | 0.0475 (5) | |
| C11 | 0.16101 (18) | 0.4218 (2) | 0.76339 (16) | 0.0532 (5) | |
| H11 | 0.1528 | 0.4365 | 0.6880 | 0.064* | |
| C6 | 0.6818 (2) | 0.9216 (2) | 0.62138 (17) | 0.0562 (5) | |
| C8 | 0.1838 (2) | 0.3779 (2) | 0.98593 (16) | 0.0568 (5) | |
| H8 | 0.1924 | 0.3631 | 1.0613 | 0.068* | |
| C13 | 0.33844 (19) | 0.5943 (2) | 0.76529 (17) | 0.0541 (5) | |
| H13 | 0.3245 | 0.6022 | 0.6897 | 0.065* | |
| C1 | 0.68403 (19) | 0.9260 (2) | 0.73602 (17) | 0.0562 (5) | |
| H1A | 0.7417 | 0.9850 | 0.7730 | 0.067* | |
| C10 | 0.08170 (19) | 0.3259 (2) | 0.81251 (15) | 0.0487 (5) | |
| C2 | 0.5999 (2) | 0.8419 (2) | 0.79293 (17) | 0.0596 (6) | |
| H2 | 0.6014 | 0.8442 | 0.8695 | 0.072* | |
| C4 | 0.5127 (2) | 0.7514 (2) | 0.62570 (17) | 0.0675 (6) | |
| H4 | 0.4552 | 0.6925 | 0.5885 | 0.081* | |
| C5 | 0.5955 (2) | 0.8342 (2) | 0.56650 (18) | 0.0685 (6) | |
| H5 | 0.5940 | 0.8320 | 0.4899 | 0.082* | |
| C7 | 0.2623 (2) | 0.4739 (2) | 0.93676 (16) | 0.0527 (5) | |
| H7 | 0.3227 | 0.5241 | 0.9794 | 0.063* | |
| C3 | 0.51177 (17) | 0.75259 (19) | 0.74034 (15) | 0.0469 (4) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Cl1 | 0.0696 (3) | 0.0808 (4) | 0.0541 (3) | −0.0187 (3) | −0.0139 (2) | −0.0002 (3) |
| Cl2 | 0.0909 (4) | 0.0874 (4) | 0.0592 (3) | −0.0312 (3) | 0.0115 (3) | 0.0010 (3) |
| O1 | 0.0660 (8) | 0.0659 (9) | 0.0468 (7) | −0.0123 (7) | 0.0010 (6) | 0.0061 (7) |
| N1 | 0.0488 (9) | 0.0486 (10) | 0.0448 (9) | 0.0033 (8) | 0.0035 (7) | 0.0006 (8) |
| C12 | 0.0462 (10) | 0.0534 (12) | 0.0477 (11) | 0.0029 (9) | 0.0022 (8) | 0.0021 (9) |
| C9 | 0.0450 (9) | 0.0526 (12) | 0.0447 (10) | −0.0002 (9) | 0.0026 (8) | 0.0009 (9) |
| C11 | 0.0550 (10) | 0.0667 (13) | 0.0379 (10) | −0.0020 (10) | −0.0040 (9) | 0.0050 (10) |
| C6 | 0.0606 (12) | 0.0551 (13) | 0.0528 (12) | −0.0015 (11) | 0.0068 (9) | −0.0004 (10) |
| C8 | 0.0636 (12) | 0.0680 (14) | 0.0387 (11) | −0.0075 (11) | −0.0017 (9) | 0.0044 (9) |
| C13 | 0.0536 (11) | 0.0650 (13) | 0.0438 (11) | 0.0004 (10) | −0.0004 (9) | 0.0027 (10) |
| C1 | 0.0545 (11) | 0.0591 (13) | 0.0549 (12) | −0.0096 (10) | −0.0027 (10) | −0.0073 (10) |
| C10 | 0.0464 (10) | 0.0563 (13) | 0.0433 (10) | 0.0008 (9) | −0.0038 (8) | −0.0006 (9) |
| C2 | 0.0635 (12) | 0.0741 (16) | 0.0413 (11) | −0.0017 (12) | −0.0010 (9) | −0.0027 (10) |
| C4 | 0.0827 (14) | 0.0689 (16) | 0.0510 (12) | −0.0199 (13) | −0.0014 (11) | −0.0100 (12) |
| C5 | 0.0920 (15) | 0.0728 (16) | 0.0406 (11) | −0.0281 (13) | 0.0017 (11) | −0.0082 (11) |
| C7 | 0.0552 (10) | 0.0596 (13) | 0.0432 (10) | −0.0070 (10) | −0.0054 (9) | −0.0026 (10) |
| C3 | 0.0482 (9) | 0.0446 (11) | 0.0480 (10) | 0.0051 (8) | 0.0021 (8) | −0.0001 (9) |
Geometric parameters (Å, º)
| Cl1—C10 | 1.733 (2) | C6—C1 | 1.392 (3) |
| Cl2—C6 | 1.738 (2) | C8—C7 | 1.364 (3) |
| O1—C9 | 1.344 (2) | C8—H8 | 0.9300 |
| O1—H1 | 0.8200 | C13—H13 | 0.9300 |
| N1—C13 | 1.268 (2) | C1—C2 | 1.362 (3) |
| N1—C3 | 1.424 (2) | C1—H1A | 0.9300 |
| C12—C7 | 1.390 (3) | C2—C3 | 1.394 (3) |
| C12—C11 | 1.392 (3) | C2—H2 | 0.9300 |
| C12—C13 | 1.456 (3) | C4—C5 | 1.360 (3) |
| C9—C8 | 1.388 (3) | C4—C3 | 1.391 (3) |
| C9—C10 | 1.392 (3) | C4—H4 | 0.9300 |
| C11—C10 | 1.368 (3) | C5—H5 | 0.9300 |
| C11—H11 | 0.9300 | C7—H7 | 0.9300 |
| C6—C5 | 1.384 (3) | ||
| C9—O1—H1 | 109.5 | C2—C1—H1A | 120.7 |
| C13—N1—C3 | 120.11 (16) | C6—C1—H1A | 120.7 |
| C7—C12—C11 | 117.68 (18) | C11—C10—C9 | 120.60 (18) |
| C7—C12—C13 | 124.26 (18) | C11—C10—Cl1 | 120.45 (15) |
| C11—C12—C13 | 118.02 (17) | C9—C10—Cl1 | 118.90 (16) |
| O1—C9—C8 | 123.27 (17) | C1—C2—C3 | 122.28 (19) |
| O1—C9—C10 | 118.49 (17) | C1—C2—H2 | 118.9 |
| C8—C9—C10 | 118.21 (18) | C3—C2—H2 | 118.9 |
| C10—C11—C12 | 121.26 (18) | C5—C4—C3 | 121.8 (2) |
| C10—C11—H11 | 119.4 | C5—C4—H4 | 119.1 |
| C12—C11—H11 | 119.4 | C3—C4—H4 | 119.1 |
| C5—C6—C1 | 120.6 (2) | C4—C5—C6 | 119.4 (2) |
| C5—C6—Cl2 | 119.58 (16) | C4—C5—H5 | 120.3 |
| C1—C6—Cl2 | 119.77 (16) | C6—C5—H5 | 120.3 |
| C7—C8—C9 | 121.02 (19) | C8—C7—C12 | 121.22 (19) |
| C7—C8—H8 | 119.5 | C8—C7—H7 | 119.4 |
| C9—C8—H8 | 119.5 | C12—C7—H7 | 119.4 |
| N1—C13—C12 | 125.60 (19) | C4—C3—C2 | 117.33 (18) |
| N1—C13—H13 | 117.2 | C4—C3—N1 | 125.25 (18) |
| C12—C13—H13 | 117.2 | C2—C3—N1 | 117.42 (16) |
| C2—C1—C6 | 118.58 (19) | ||
| C7—C12—C11—C10 | −0.5 (3) | C8—C9—C10—Cl1 | 177.26 (15) |
| C13—C12—C11—C10 | 177.53 (18) | C6—C1—C2—C3 | −0.3 (3) |
| O1—C9—C8—C7 | 178.76 (19) | C3—C4—C5—C6 | 0.4 (4) |
| C10—C9—C8—C7 | 0.5 (3) | C1—C6—C5—C4 | −0.3 (4) |
| C3—N1—C13—C12 | 175.96 (17) | Cl2—C6—C5—C4 | −179.65 (19) |
| C7—C12—C13—N1 | −0.3 (3) | C9—C8—C7—C12 | −0.8 (3) |
| C11—C12—C13—N1 | −178.15 (18) | C11—C12—C7—C8 | 0.7 (3) |
| C5—C6—C1—C2 | 0.3 (3) | C13—C12—C7—C8 | −177.13 (19) |
| Cl2—C6—C1—C2 | 179.62 (16) | C5—C4—C3—C2 | −0.3 (3) |
| C12—C11—C10—C9 | 0.2 (3) | C5—C4—C3—N1 | −179.3 (2) |
| C12—C11—C10—Cl1 | −177.24 (16) | C1—C2—C3—C4 | 0.3 (3) |
| O1—C9—C10—C11 | −178.58 (17) | C1—C2—C3—N1 | 179.32 (18) |
| C8—C9—C10—C11 | −0.2 (3) | C13—N1—C3—C4 | −7.7 (3) |
| O1—C9—C10—Cl1 | −1.1 (3) | C13—N1—C3—C2 | 173.35 (18) |
Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| O1—H1···N1i | 0.82 | 1.96 | 2.778 (2) | 176 |
Symmetry code: (i) −x+1/2, y−1/2, −z+2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: JJ2120).
References
- Aydogan, F., Ocal, N., Turgut, Z. & Yolacan, C. (2001). Bull. Korean Chem. Soc. 22, 476–480.
- Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555–1573.
- Calligaris, M., Nardin, G. & Randaccio, L. (1972). Coord. Chem. Rev. 7, 385–403.
- Cozzi, P. G. (2004). Chem. Soc. Rev. 33, 410–421.
- Curini, A., Epifano, F., Maltese, F. & Marcotullio, M. C. (2002). Tetrahedron Lett. 43, 3821–3823.
- Desai, S. B., Desai, P. B. & Desai, K. R. (2001). Heterocycl. Commun. 7, 83–90.
- Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
- Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838.
- Flack, H. D. (1983). Acta Cryst. A39, 876–881.
- Gül, Z. S., Erşah˙in, F., Ağar, E. & Işık, Ş. (2007). Acta Cryst. E63, o2854.
- Karia, F. D. & Parsania, P. H. (1999). Asian J. Chem. 11, 991–995.
- Lozier, R., Bogomolni, R. A. & Stoekenius, W. (1975). Biophys. J. 15, 955–962. [DOI] [PMC free article] [PubMed]
- Şahin, Z. S., Ağar, A. A., Erşahin, F. & Işık, Ş. (2009). Acta Cryst. E65, o718. [DOI] [PMC free article] [PubMed]
- Şahin, O., Büyükgüngör, O., Albayrak, C. & Odabaşogˇlu, M. (2005). Acta Cryst. E61, o1288–o1290.
- Şahin, Z. S., Erşahin, F., Ağar, A. A. & Işık, Ş. (2009). Acta Cryst. E65, o547. [DOI] [PMC free article] [PubMed]
- Şahin, Z. S., Işık, Ş., Erşahin, F. & Ağar, E. (2009). Acta Cryst. E65, o811. [DOI] [PMC free article] [PubMed]
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Stoe & Cie (2002). X-RED and X-AREA Stoe & Cie, Darmstadt, Germany.
- Williams, D. R. (1972). Chem. Rev. 72, 203–213. [DOI] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812005193/jj2120sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812005193/jj2120Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812005193/jj2120Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


