Skip to main content
Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Feb 17;68(Pt 3):o765–o766. doi: 10.1107/S1600536812006241

2-{(E)-1-[2-(2-Nitro­phen­yl)hydrazin-1-yl­idene]eth­yl}benzene-1,3-diol mono­hydrate

R Alan Howie a, James L Wardell b,, Solange M S V Wardell c, Edward R T Tiekink d,*
PMCID: PMC3295529  PMID: 22412640

Abstract

The hydrazone mol­ecule in title monohydrate, C14H13N3O4·H2O, is almost coplanar, the dihedral angle between the terminal benzene rings being 3.22 (15)°; the nitro group is coplanar with the benzene ring to which it is bonded [O—N—C—C = −2.8 (4)°]. The hy­droxy group forms an intra­molecular hydrogen bond with the imine N atom, and the conformation about the imine bond [1.305 (3) Å] is E. In the crystal, supra­molecular layers in the (203) plane are connected into a double layer via water–nitro O—H⋯O hydrogen bonds, along with π–π inter­actions [ring centroid–centroid distance = 3.7859 (19) Å].

Related literature  

For background on the influence of substituents upon the supra­molecular structures of hydrazones, see: Glidewell et al. (2004); Ferguson et al. (2005); Baddeley et al. (2009).graphic file with name e-68-0o765-scheme1.jpg

Experimental  

Crystal data  

  • C14H13N3O4·H2O

  • M r = 305.29

  • Monoclinic, Inline graphic

  • a = 7.6448 (6) Å

  • b = 21.405 (2) Å

  • c = 8.5755 (7) Å

  • β = 106.976 (5)°

  • V = 1342.1 (2) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.12 mm−1

  • T = 120 K

  • 0.45 × 0.25 × 0.02 mm

Data collection  

  • Bruker–Nonius Roper CCD camera on κ-goniostat diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 2007) T min = 0.776, T max = 0.998

  • 16295 measured reflections

  • 3068 independent reflections

  • 1492 reflections with I > 2σ(I)

  • R int = 0.110

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.066

  • wR(F 2) = 0.194

  • S = 1.01

  • 3068 reflections

  • 221 parameters

  • 6 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.37 e Å−3

  • Δρmin = −0.30 e Å−3

Data collection: COLLECT (Hooft, 1998); cell refinement: DENZO (Otwinowski & Minor, 1997) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812006241/pv2513sup1.cif

e-68-0o765-sup1.cif (18.8KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812006241/pv2513Isup2.hkl

e-68-0o765-Isup2.hkl (147.5KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812006241/pv2513Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H1O⋯N1 0.85 (2) 1.69 (2) 2.489 (3) 157 (4)
N2—H2N⋯O3 0.88 (2) 1.93 (2) 2.602 (3) 132 (2)
O2—H2O⋯O1wi 0.84 (3) 1.90 (3) 2.742 (3) 174 (2)
O1W—H1W⋯O1ii 0.84 (2) 2.08 (3) 2.910 (3) 169 (3)
O1W—H2W⋯O4iii 0.85 (3) 2.50 (3) 3.256 (3) 150 (3)
C11—H11⋯O3iv 0.95 2.52 3.447 (4) 166

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic.

Acknowledgments

The use of the EPSRC X-ray crystallographic service at the University of Southampton, England, and the valuable assistance of the staff there is gratefully acknowledged. JLW acknowledges support from CAPES (Brazil). We also thank the Ministry of Higher Education (Malaysia) for funding structural studies through the High-Impact Research scheme (UM·C/HIR/MOHE/SC/12).

supplementary crystallographic information

Comment

The crystal structure of the title compound (I), has been determined in connection with on-going investigations into the structural chemistry of hydrazones, focusing in particular upon the influence of substituents upon their supramolecular structures, with a special emphasis on derivatives having potential biological activities. These studies have included investigations on substituted phenylhydrazines with substituted benzaldehydes (Glidewell et al., 2004; Ferguson et al., 2005) and 2-hydroxyacetophenone (Baddeley et al., 2009).

In (I) (Fig. 1), the dihedral angle between the benzene rings is 3.22 (15)°, indicating an approximately planar molecule. The nitro group is co-planar with the benzene ring to which it is bonded as seen in the value of the O3—N3—C10—C9 torsion angle of -2.8 (4)°. The hydroxy group forms an intramolecular hydrogen bond with the imine-N1 atom, Table 1. The configuration about the N1═C7 imine bond [1.305 (3) Å] is E.

With the exception of the O1w—H2w···O4iii hydrogen bond, all the interactions listed in Table 1 combine to form supramolecular layers parallel to (203). These are connected into double layers via the O1w—H2w···O4iii hydrogen bonds and π–π interactions [ring centroid···centroid distance = 3.7859 (19) Å, angle between rings = 3.22 (15)° for i: 1 - x, -y, 1 - z]. Layers stack without specific interactions between them (Fig. 2).

Experimental

A solution of 2-nitrophenylhydrazine and 2,6-dihydroxyacetophenone (2 mmol each) in ethanol (20 ml) was refluxed for 1 h, rotary evaporated and the residue recrystallized from methanol, m.p. 452–454 K.

Refinement

The C-bound H atoms were geometrically placed (C—H = 0.95–0.98 Å) and refined as riding with Uiso(H) = 1.2–1.5Ueq(C). The O- and N-bound H atoms were located from a difference map and refined with the distance restraints O—H = 0.84±0.01 and N—H = 0.88±0.01 Å, and with Uiso(H) = zUeq(carrier atom); z = 1.5 for O and z = 1.2 for N.

Figures

Fig. 1.

Fig. 1.

The molecular structures of the constituents of (I) showing the atom-labelling scheme and displacement ellipsoids at the 50% probability level.

Fig. 2.

Fig. 2.

A view in projection down the b axis of the packing of supramolecular double layers in (I). The O—H···O (orange), O—H···N (orange), N—H···O (blue), C—H···O (brown) and π–π (purple) interactions are shown as dashed lines.

Crystal data

C14H13N3O4·H2O F(000) = 640
Mr = 305.29 Dx = 1.511 Mg m3
Monoclinic, P21/n Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2yn Cell parameters from 19763 reflections
a = 7.6448 (6) Å θ = 2.9–27.5°
b = 21.405 (2) Å µ = 0.12 mm1
c = 8.5755 (7) Å T = 120 K
β = 106.976 (5)° Plate, brown
V = 1342.1 (2) Å3 0.45 × 0.25 × 0.02 mm
Z = 4

Data collection

Bruker-Nonius Roper CCD camera on κ-goniostat diffractometer 3068 independent reflections
Radiation source: Bruker–Nonius FR591 rotating anode 1492 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.110
Detector resolution: 9.091 pixels mm-1 θmax = 27.5°, θmin = 2.9°
φ & ω scans h = −9→9
Absorption correction: multi-scan (SADABS; Sheldrick, 2007) k = −27→27
Tmin = 0.776, Tmax = 0.998 l = −11→11
16295 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.066 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.194 H atoms treated by a mixture of independent and constrained refinement
S = 1.01 w = 1/[σ2(Fo2) + (0.0914P)2] where P = (Fo2 + 2Fc2)/3
3068 reflections (Δ/σ)max < 0.001
221 parameters Δρmax = 0.37 e Å3
6 restraints Δρmin = −0.30 e Å3

Special details

Experimental. IR (KBr, cm-1): ν 3600–2000 (v br), 3543, 3427, 3340, 1622, 1585, 1525. Anal. Found: C, 54.86; H, 5.03; N, 14.07. Calculated for C14H15N3O5: C, 55.08; H, 4.95; N, 13.76%.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.6688 (3) −0.09682 (11) 0.3317 (3) 0.0350 (6)
H1O 0.659 (5) −0.0590 (7) 0.356 (5) 0.062 (13)*
O2 1.1256 (3) −0.07064 (10) 0.8502 (3) 0.0340 (6)
H2O 1.189 (4) −0.0952 (12) 0.921 (3) 0.034 (10)*
O3 0.6421 (3) 0.18198 (10) 0.5589 (3) 0.0353 (6)
O4 0.4717 (3) 0.25227 (10) 0.4047 (3) 0.0411 (7)
N1 0.7166 (3) 0.00802 (11) 0.4628 (3) 0.0247 (6)
N2 0.6577 (3) 0.06852 (12) 0.4550 (3) 0.0272 (6)
H2N 0.702 (4) 0.0956 (11) 0.534 (3) 0.033 (9)*
N3 0.5292 (3) 0.19801 (13) 0.4289 (3) 0.0315 (7)
C1 0.8928 (4) −0.07782 (14) 0.5935 (4) 0.0238 (7)
C2 0.8060 (4) −0.11805 (15) 0.4603 (4) 0.0288 (8)
C3 0.8560 (4) −0.17972 (15) 0.4541 (4) 0.0337 (8)
H3 0.7969 −0.2048 0.3625 0.040*
C4 0.9922 (4) −0.20473 (15) 0.5816 (4) 0.0322 (8)
H4 1.0262 −0.2473 0.5779 0.039*
C5 1.0795 (4) −0.16848 (14) 0.7142 (4) 0.0285 (8)
H5 1.1721 −0.1863 0.8019 0.034*
C6 1.0333 (4) −0.10608 (14) 0.7204 (4) 0.0256 (7)
C7 0.8350 (4) −0.01181 (14) 0.5962 (3) 0.0228 (7)
C8 0.9016 (4) 0.03103 (14) 0.7387 (4) 0.0314 (8)
H8A 0.9969 0.0584 0.7212 0.043 (10)*
H8B 0.9522 0.0063 0.8380 0.043 (9)*
H8C 0.7996 0.0564 0.7506 0.067 (12)*
C9 0.5300 (4) 0.09005 (14) 0.3180 (3) 0.0246 (7)
C10 0.4639 (4) 0.15195 (14) 0.3020 (3) 0.0252 (7)
C11 0.3303 (4) 0.17195 (15) 0.1615 (4) 0.0285 (8)
H11 0.2881 0.2139 0.1538 0.034*
C12 0.2596 (4) 0.13127 (15) 0.0345 (4) 0.0307 (8)
H12 0.1681 0.1446 −0.0605 0.037*
C13 0.3240 (4) 0.07063 (15) 0.0477 (4) 0.0313 (8)
H13 0.2763 0.0424 −0.0399 0.038*
C14 0.4557 (4) 0.05009 (15) 0.1848 (4) 0.0268 (7)
H14 0.4973 0.0081 0.1895 0.032*
O1W 0.6617 (3) 0.14329 (12) 0.9035 (3) 0.0397 (6)
H1W 0.560 (3) 0.1348 (17) 0.836 (3) 0.060*
H2W 0.714 (4) 0.1722 (13) 0.867 (4) 0.060*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0414 (14) 0.0315 (15) 0.0260 (13) 0.0007 (11) 0.0000 (10) −0.0022 (11)
O2 0.0382 (14) 0.0312 (14) 0.0253 (13) 0.0020 (10) −0.0021 (11) −0.0004 (10)
O3 0.0420 (14) 0.0314 (14) 0.0275 (13) −0.0038 (10) 0.0022 (11) 0.0001 (10)
O4 0.0468 (15) 0.0224 (14) 0.0475 (15) 0.0026 (11) 0.0032 (11) −0.0025 (11)
N1 0.0256 (14) 0.0238 (15) 0.0257 (14) −0.0001 (11) 0.0088 (11) 0.0013 (11)
N2 0.0336 (16) 0.0224 (16) 0.0228 (15) −0.0007 (12) 0.0037 (12) −0.0022 (12)
N3 0.0348 (17) 0.0299 (17) 0.0292 (16) −0.0038 (13) 0.0083 (13) 0.0002 (13)
C1 0.0198 (16) 0.0295 (18) 0.0244 (16) −0.0015 (13) 0.0099 (13) 0.0024 (13)
C2 0.0312 (18) 0.030 (2) 0.0240 (17) −0.0031 (14) 0.0069 (14) 0.0007 (14)
C3 0.043 (2) 0.029 (2) 0.0288 (18) −0.0028 (15) 0.0103 (16) −0.0062 (15)
C4 0.0382 (19) 0.0231 (19) 0.038 (2) −0.0017 (15) 0.0150 (16) −0.0007 (15)
C5 0.0317 (18) 0.0274 (19) 0.0275 (18) 0.0004 (14) 0.0103 (14) 0.0044 (14)
C6 0.0298 (18) 0.0255 (19) 0.0225 (16) −0.0049 (14) 0.0092 (14) −0.0029 (13)
C7 0.0193 (16) 0.0277 (19) 0.0215 (16) −0.0010 (13) 0.0062 (13) 0.0021 (13)
C8 0.036 (2) 0.0264 (19) 0.0254 (18) 0.0007 (15) −0.0015 (15) −0.0014 (14)
C9 0.0279 (18) 0.0288 (19) 0.0168 (16) −0.0020 (14) 0.0059 (13) 0.0003 (13)
C10 0.0294 (17) 0.0246 (19) 0.0226 (17) −0.0046 (14) 0.0092 (14) −0.0027 (13)
C11 0.0307 (18) 0.0254 (18) 0.0315 (18) −0.0007 (14) 0.0124 (14) 0.0042 (14)
C12 0.0272 (18) 0.036 (2) 0.0265 (18) 0.0030 (15) 0.0040 (14) 0.0035 (15)
C13 0.0338 (19) 0.035 (2) 0.0239 (18) 0.0005 (15) 0.0061 (14) −0.0035 (14)
C14 0.0263 (17) 0.0276 (18) 0.0253 (17) 0.0010 (14) 0.0059 (13) −0.0004 (14)
O1W 0.0406 (15) 0.0385 (16) 0.0343 (14) −0.0005 (12) 0.0019 (11) 0.0024 (12)

Geometric parameters (Å, º)

O1—C2 1.359 (4) C5—C6 1.387 (4)
O1—H1O 0.844 (10) C5—H5 0.9500
O2—C6 1.361 (3) C7—C8 1.494 (4)
O2—H2O 0.844 (10) C8—H8A 0.9800
O3—N3 1.242 (3) C8—H8B 0.9800
O4—N3 1.238 (3) C8—H8C 0.9800
N1—C7 1.305 (3) C9—C14 1.407 (4)
N1—N2 1.366 (3) C9—C10 1.411 (4)
N2—C9 1.370 (4) C10—C11 1.399 (4)
N2—H2N 0.880 (10) C11—C12 1.376 (4)
N3—C10 1.445 (4) C11—H11 0.9500
C1—C6 1.422 (4) C12—C13 1.381 (4)
C1—C2 1.430 (4) C12—H12 0.9500
C1—C7 1.483 (4) C13—C14 1.378 (4)
C2—C3 1.380 (4) C13—H13 0.9500
C3—C4 1.379 (4) C14—H14 0.9500
C3—H3 0.9500 O1W—H1W 0.841 (10)
C4—C5 1.377 (4) O1W—H2W 0.845 (10)
C4—H4 0.9500
C2—O1—H1O 103 (3) N1—C7—C8 120.1 (3)
C6—O2—H2O 107 (2) C1—C7—C8 124.5 (2)
C7—N1—N2 119.1 (3) C7—C8—H8A 109.5
N1—N2—C9 120.2 (2) C7—C8—H8B 109.5
N1—N2—H2N 123 (2) H8A—C8—H8B 109.5
C9—N2—H2N 117 (2) C7—C8—H8C 109.5
O4—N3—O3 122.0 (3) H8A—C8—H8C 109.5
O4—N3—C10 119.1 (3) H8B—C8—H8C 109.5
O3—N3—C10 119.0 (3) N2—C9—C14 120.6 (3)
C6—C1—C2 115.2 (3) N2—C9—C10 123.0 (3)
C6—C1—C7 123.8 (3) C14—C9—C10 116.3 (3)
C2—C1—C7 121.0 (3) C11—C10—C9 121.5 (3)
O1—C2—C3 116.5 (3) C11—C10—N3 116.4 (3)
O1—C2—C1 121.0 (3) C9—C10—N3 122.2 (3)
C3—C2—C1 122.5 (3) C12—C11—C10 120.5 (3)
C4—C3—C2 119.7 (3) C12—C11—H11 119.8
C4—C3—H3 120.2 C10—C11—H11 119.8
C2—C3—H3 120.2 C11—C12—C13 118.8 (3)
C3—C4—C5 120.5 (3) C11—C12—H12 120.6
C3—C4—H4 119.8 C13—C12—H12 120.6
C5—C4—H4 119.8 C14—C13—C12 121.6 (3)
C4—C5—C6 120.5 (3) C14—C13—H13 119.2
C4—C5—H5 119.8 C12—C13—H13 119.2
C6—C5—H5 119.8 C13—C14—C9 121.3 (3)
O2—C6—C5 119.4 (3) C13—C14—H14 119.3
O2—C6—C1 118.9 (3) C9—C14—H14 119.3
C5—C6—C1 121.6 (3) H1W—O1W—H2W 111 (3)
N1—C7—C1 115.5 (3)
C7—N1—N2—C9 −178.3 (3) C6—C1—C7—C8 −7.0 (5)
C6—C1—C2—O1 179.6 (3) C2—C1—C7—C8 172.1 (3)
C7—C1—C2—O1 0.5 (4) N1—N2—C9—C14 0.9 (4)
C6—C1—C2—C3 −0.7 (4) N1—N2—C9—C10 −179.8 (3)
C7—C1—C2—C3 −179.8 (3) N2—C9—C10—C11 −178.6 (3)
O1—C2—C3—C4 −179.0 (3) C14—C9—C10—C11 0.7 (4)
C1—C2—C3—C4 1.3 (5) N2—C9—C10—N3 1.2 (5)
C2—C3—C4—C5 −0.5 (5) C14—C9—C10—N3 −179.5 (3)
C3—C4—C5—C6 −0.8 (5) O4—N3—C10—C11 −3.3 (4)
C4—C5—C6—O2 −177.8 (3) O3—N3—C10—C11 177.0 (3)
C4—C5—C6—C1 1.5 (5) O4—N3—C10—C9 176.9 (3)
C2—C1—C6—O2 178.6 (3) O3—N3—C10—C9 −2.8 (4)
C7—C1—C6—O2 −2.3 (4) C9—C10—C11—C12 0.0 (4)
C2—C1—C6—C5 −0.7 (4) N3—C10—C11—C12 −179.8 (3)
C7—C1—C6—C5 178.4 (3) C10—C11—C12—C13 −0.6 (5)
N2—N1—C7—C1 −179.4 (2) C11—C12—C13—C14 0.4 (5)
N2—N1—C7—C8 1.2 (4) C12—C13—C14—C9 0.3 (5)
C6—C1—C7—N1 173.6 (3) N2—C9—C14—C13 178.5 (3)
C2—C1—C7—N1 −7.4 (4) C10—C9—C14—C13 −0.8 (4)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
O1—H1O···N1 0.85 (2) 1.69 (2) 2.489 (3) 157 (4)
N2—H2N···O3 0.88 (2) 1.93 (2) 2.602 (3) 132 (2)
O2—H2O···O1Wi 0.84 (3) 1.90 (3) 2.742 (3) 174 (2)
O1W—H1W···O1ii 0.84 (2) 2.08 (3) 2.910 (3) 169 (3)
O1W—H2W···O4iii 0.85 (3) 2.50 (3) 3.256 (3) 150 (3)
C11—H11···O3iv 0.95 2.52 3.447 (4) 166

Symmetry codes: (i) −x+2, −y, −z+2; (ii) −x+1, −y, −z+1; (iii) x+1/2, −y+1/2, z+1/2; (iv) x−1/2, −y+1/2, z−1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: PV2513).

References

  1. Baddeley, T. C., de Souza França, L., Howie, R. A., de Lima, G. M., Skakle, J. M. S., de Souza, J. D., Wardell, J. L. & Wardell, S. M. S. V. (2009). Z. Kristallogr. 224, 213–224.
  2. Brandenburg, K. (2006). DIAMOND Crystal Impact GbR, Bonn, Germany.
  3. Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
  4. Ferguson, G., Glidewell, C., Low, J. N., Skakle, J. M. S. & Wardell, J. L. (2005). Acta Cryst. C61, o613–o616. [DOI] [PubMed]
  5. Glidewell, C., Low, J. N., Skakle, J. M. S. & Wardell, J. L. (2004). Acta Cryst. C60, o19–o23. [DOI] [PubMed]
  6. Hooft, R. W. W. (1998). COLLECT Nonius BV, Delft, The Netherlands.
  7. Otwinowski, Z. & Minor, W. (1997). Methods in Enzymology, Vol. 276, Macromolecular Crystallography, Part A, edited by C. W. Carter Jr & R. M. Sweet, pp. 307–326. New York: Academic Press.
  8. Sheldrick, G. M. (2007). SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  9. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  10. Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812006241/pv2513sup1.cif

e-68-0o765-sup1.cif (18.8KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812006241/pv2513Isup2.hkl

e-68-0o765-Isup2.hkl (147.5KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812006241/pv2513Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

RESOURCES